Clone LD09852 Report

Search the DGRC for LD09852

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:98
Well:52
Vector:pBS SK-
Associated Gene/TranscriptAac11-RA
Protein status:LD09852.pep: gold
Preliminary Size:1838
Sequenced Size:1823

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6582 2000-02-14 Blastp of sequenced clone
CG6582 2001-01-01 Release 2 assignment
CG6582 2003-01-01 Sim4 clustering to Release 3
Aac11 2008-04-29 Release 5.5 accounting
Aac11 2008-08-15 Release 5.9 accounting
Aac11 2008-12-18 5.12 accounting

Clone Sequence Records

LD09852.complete Sequence

1823 bp (1823 high quality bases) assembled on 2000-02-14

GenBank Submission: AF160921

> LD09852.complete
AAAAACTCTCATTTGAGAAACGCTGTCATCCAATTTAACTGCAACGAAAA
CTGTGTAAAGTAAACTATAGACGCTTGAAACCTCTGCAAATATAGTGCGT
ACCACTGGCCAAGAAGATGGACAACATAGAGCGACTGTACAAATGCTACG
AGATTCTGTCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATAT
AAAGAGATACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGC
ATCGCAGTTCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACA
CAGCCATAGACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATC
CGCCGCCAGGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGA
TGCTACCATCCGAGTGGGTGATACTCTGGCCCAGCTGTTAATCCTGGACG
ATCCCACAGAACTCCAGCAGGTCAACAACTCACTGCTGGCCATCATAAAA
TTGGACACCAAGAGCTCCATCGCCGGATTGTTTCAGCAAATCTCCACTGG
GGATGAAACGACAAGGGAGCGCTGCCTCAAGTTCATTGCCACCAAGCTGC
TGACCATGGGTCCCACAGTTATTACCAAGGAAATCGAGGACTATATCGTG
GAGGAGATCAAAAAGGCTTTGCAGGATGTCACTGCCGATGAGTTTCATCT
GTGCATGACAATTCTGGGAGCCACCAAACTGGGAAGCACCATCACGGGAC
ACGCCGAGCTCGTCAAGCTGGCCACGGAGCAGGCGGAGCTAAATAACACA
GACGCGGACATCATAGCCGTCGACGACGAGGTGGTGGAGCGATTCATTCA
GTGCGCCTCTGCTGCGGCTCCTTACTTTTCGAAAACCATCAAATCCACGG
CCTTCGTGGCTCACGTTTGCGATAAACTGTTGCCCATCAAGACCTGGAAC
ATGATCGCCACTGCAGTTTCGCAAGATCAAATCCAACTTAGATTACTAAA
GGTATTCGCCGAGATGATAACCAACACAGACAAGCTGGACAATGCCAGCG
AACGGATTAATGCAGTCTACAATGTATTGCTGGAATACATGCCTTTGCCA
AAGCTGAGTGACGAGGATCTGGGAGATACACCGCCCTCGTTTCAGTTTTC
GCACGCCGAGTGCTTACTGTACGCATTGCACACTCTTGGAAAAAATCATC
CAAATAGTTTAAGTTTCGTCGAGGATGCAGAGAAACTAAAAGACTTTCGA
GCTAGATTGCAATATCTTGCAAGGGGAACACAGGGTTATATTAAGAAACT
GGAGGAGTCGCTCAAAGGCAAGACGGGAGAGGAGCTCAAAACGGAGGAGA
ACCAACTGAAGCAGACGGCACTGAAGACGACATCAAACATCAACATTCTG
ATCCGGGATCTATTTCATTCACCGCCCATATTCAAACATGACATTGTGCT
CTCCTGGATTGTGCCAAAAAATAACAAGCTGGGCAAGCGTCATGCACCCA
TCACTTTTGGGGAGAAAGCCGCTGCTAACGGCAAGGATAAGGATCAGGAG
CCAGAGAAGAAATCGCGGCCATCCAACGATCAGAAGTTTTACTCGCCGCC
ATCTGGAAAATACTCCAACAAGGTCAACCAGAGCTACGGAAACAACAATC
GCACGAGACAACGTGGCGGCGGCGGCGGTGGCGGCAGCGGTGGAGGCTAC
AGAAACAGGCGATTCAACAAGTACTAAGTAAAGAATCAATCGTGAGGCAG
AAGAGCAGCAAAGAACACTTCACTTGAATGGTTTGTCCCTAGTCCGTAGA
CATACAAAAAAAAAAAAAAAAAA

LD09852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11.c 2549 Aac11.c 96..1918 1..1823 9100 99.9 Plus
Aac11-RA 1978 Aac11-RA 96..1918 1..1823 9100 99.9 Plus
Aac11.e 2326 Aac11.e 54..1833 1..1780 8900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17475300..17475835 881..346 2680 100 Minus
chr2L 23010047 chr2L 17474117..17474449 1805..1473 1665 100 Minus
chr2L 23010047 chr2L 17474766..17474969 1285..1082 1020 100 Minus
chr2L 23010047 chr2L 17475023..17475225 1083..881 1015 100 Minus
chr2L 23010047 chr2L 17474517..17474704 1472..1285 940 100 Minus
chr2L 23010047 chr2L 17476256..17476440 185..1 925 100 Minus
chr2L 23010047 chr2L 17476006..17476167 347..186 810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17476693..17477228 881..346 2680 100 Minus
2L 23513712 2L 17475492..17475842 1823..1473 1740 99.7 Minus
2L 23513712 2L 17476159..17476362 1285..1082 1020 100 Minus
2L 23513712 2L 17476416..17476618 1083..881 1015 100 Minus
2L 23513712 2L 17475910..17476097 1472..1285 940 100 Minus
2L 23513712 2L 17477649..17477833 185..1 925 100 Minus
2L 23513712 2L 17477399..17477560 347..186 810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17476693..17477228 881..346 2680 100 Minus
2L 23513712 2L 17475492..17475842 1823..1473 1740 99.7 Minus
2L 23513712 2L 17476159..17476362 1285..1082 1020 100 Minus
2L 23513712 2L 17476416..17476618 1083..881 1015 100 Minus
2L 23513712 2L 17475910..17476097 1472..1285 940 100 Minus
2L 23513712 2L 17477649..17477833 185..1 925 100 Minus
2L 23513712 2L 17477399..17477560 347..186 810 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:48:14 has no hits.

LD09852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:15 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17474117..17474449 1473..1805 100 <- Minus
chr2L 17474517..17474703 1286..1472 100 <- Minus
chr2L 17474766..17474968 1083..1285 100 <- Minus
chr2L 17475024..17475224 882..1082 100 <- Minus
chr2L 17475300..17475833 348..881 100 <- Minus
chr2L 17476006..17476167 186..347 100 <- Minus
chr2L 17476256..17476440 1..185 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:03 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1..1611 117..1727 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:24 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1..1611 117..1727 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:22 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1..1611 117..1727 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:24 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1..1611 117..1727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:42:12 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1..1611 117..1727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:45 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 54..1858 1..1805 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:24 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 54..1858 1..1805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:22 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 56..1860 1..1805 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:24 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 54..1858 1..1805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:42:12 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 56..1860 1..1805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:15 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17477399..17477560 186..347 100 <- Minus
2L 17475510..17475842 1473..1805 100 <- Minus
2L 17475910..17476096 1286..1472 100 <- Minus
2L 17476159..17476361 1083..1285 100 <- Minus
2L 17476417..17476617 882..1082 100 <- Minus
2L 17476693..17477226 348..881 100 <- Minus
2L 17477649..17477833 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:15 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17477399..17477560 186..347 100 <- Minus
2L 17475510..17475842 1473..1805 100 <- Minus
2L 17475910..17476096 1286..1472 100 <- Minus
2L 17476159..17476361 1083..1285 100 <- Minus
2L 17476417..17476617 882..1082 100 <- Minus
2L 17476693..17477226 348..881 100 <- Minus
2L 17477649..17477833 1..185 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:15 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17477399..17477560 186..347 100 <- Minus
2L 17475510..17475842 1473..1805 100 <- Minus
2L 17475910..17476096 1286..1472 100 <- Minus
2L 17476159..17476361 1083..1285 100 <- Minus
2L 17476417..17476617 882..1082 100 <- Minus
2L 17476693..17477226 348..881 100 <- Minus
2L 17477649..17477833 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:22 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17476417..17476617 882..1082 100 <- Minus
arm_2L 17475510..17475842 1473..1805 100 <- Minus
arm_2L 17475910..17476096 1286..1472 100 <- Minus
arm_2L 17476159..17476361 1083..1285 100 <- Minus
arm_2L 17476693..17477226 348..881 100 <- Minus
arm_2L 17477399..17477560 186..347 100 <- Minus
arm_2L 17477649..17477833 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:51 Download gff for LD09852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17476159..17476361 1083..1285 100 <- Minus
2L 17476417..17476617 882..1082 100 <- Minus
2L 17475510..17475842 1473..1805 100 <- Minus
2L 17475910..17476096 1286..1472 100 <- Minus
2L 17476693..17477226 348..881 100 <- Minus
2L 17477399..17477560 186..347 100 <- Minus
2L 17477649..17477833 1..185 100   Minus

LD09852.hyp Sequence

Translation from 116 to 1726

> LD09852.hyp
MDNIERLYKCYEILSEAGDKISEHVDEYKEILKAVKGTSKEKRLASQFIG
NFFKHFPDLADTAIDAQFDLCEDDDTQIRRQAIKDLPKLCQGNADATIRV
GDTLAQLLILDDPTELQQVNNSLLAIIKLDTKSSIAGLFQQISTGDETTR
ERCLKFIATKLLTMGPTVITKEIEDYIVEEIKKALQDVTADEFHLCMTIL
GATKLGSTITGHAELVKLATEQAELNNTDADIIAVDDEVVERFIQCASAA
APYFSKTIKSTAFVAHVCDKLLPIKTWNMIATAVSQDQIQLRLLKVFAEM
ITNTDKLDNASERINAVYNVLLEYMPLPKLSDEDLGDTPPSFQFSHAECL
LYALHTLGKNHPNSLSFVEDAEKLKDFRARLQYLARGTQGYIKKLEESLK
GKTGEELKTEENQLKQTALKTTSNINILIRDLFHSPPIFKHDIVLSWIVP
KNNKLGKRHAPITFGEKAAANGKDKDQEPEKKSRPSNDQKFYSPPSGKYS
NKVNQSYGNNNRTRQRGGGGGGGSGGGYRNRRFNKY*

LD09852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-PA 536 CG6582-PA 1..536 1..536 2758 100 Plus

LD09852.pep Sequence

Translation from 116 to 1726

> LD09852.pep
MDNIERLYKCYEILSEAGDKISEHVDEYKEILKAVKGTSKEKRLASQFIG
NFFKHFPDLADTAIDAQFDLCEDDDTQIRRQAIKDLPKLCQGNADATIRV
GDTLAQLLILDDPTELQQVNNSLLAIIKLDTKSSIAGLFQQISTGDETTR
ERCLKFIATKLLTMGPTVITKEIEDYIVEEIKKALQDVTADEFHLCMTIL
GATKLGSTITGHAELVKLATEQAELNNTDADIIAVDDEVVERFIQCASAA
APYFSKTIKSTAFVAHVCDKLLPIKTWNMIATAVSQDQIQLRLLKVFAEM
ITNTDKLDNASERINAVYNVLLEYMPLPKLSDEDLGDTPPSFQFSHAECL
LYALHTLGKNHPNSLSFVEDAEKLKDFRARLQYLARGTQGYIKKLEESLK
GKTGEELKTEENQLKQTALKTTSNINILIRDLFHSPPIFKHDIVLSWIVP
KNNKLGKRHAPITFGEKAAANGKDKDQEPEKKSRPSNDQKFYSPPSGKYS
NKVNQSYGNNNRTRQRGGGGGGGSGGGYRNRRFNKY*

LD09852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15101-PA 534 GF15101-PA 1..534 1..536 2559 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21743-PA 538 GG21743-PA 1..538 1..536 2783 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10157-PA 531 GH10157-PA 1..531 1..536 2458 86.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-PA 536 CG6582-PA 1..536 1..536 2758 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22431-PA 535 GI22431-PA 1..535 1..536 2505 87.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14497-PA 530 GL14497-PA 1..507 1..507 2417 90.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19700-PA 530 GA19700-PA 1..507 1..507 2417 90.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17125-PA 534 GM17125-PA 1..534 1..536 2806 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21866-PA 535 GD21866-PA 1..535 1..536 2817 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20327-PA 535 GJ20327-PA 1..535 1..536 2523 89.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24861-PA 541 GK24861-PA 1..541 1..536 2389 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13131-PA 538 GE13131-PA 1..538 1..536 2788 96.7 Plus