BDGP Sequence Production Resources |
Search the DGRC for LD09868
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 98 |
Well: | 68 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4022-RA |
Protein status: | LD09868.pep: gold |
Preliminary Size: | 2343 |
Sequenced Size: | 2369 |
Gene | Date | Evidence |
---|---|---|
CG4022 | 2001-01-01 | Release 2 assignment |
CG4022 | 2001-10-10 | Blastp of sequenced clone |
CG4022 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4022 | 2008-04-29 | Release 5.5 accounting |
CG4022 | 2008-08-15 | Release 5.9 accounting |
CG4022 | 2008-12-18 | 5.12 accounting |
2369 bp (2369 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061113
> LD09868.complete TTTTTTGTTTATGTTGGGTTGTCGGAAAAATCGGCTGTTTTCCGTGTGTC CGTCTGCCATGAAAAGCTGCTAAAAAGCTAAATATAAAAATCAGCGCAGC ACACACGTTCCGCTGCCTGCATTGTTTGCCCATTCTAATGGGAAATTATG TGAGTGCGAGTCAGGAAAACGCATCGTGTGTGTATATATACATATATACA TAAGTATGTAACTGCGCCCGTTTGTTTGTGTGTGTTTTTGTGTGCATGGT GCAATGGAAAAGTGATTATTATAAATGAAAATCAGTGAAATGTTCAACCA ACTCCCACTTGTGCGTGTGTAGGAAGGCAGAAGGGTGTTTTGCATTCGTG TGCGTGCCAGATAAAAAGACTTTGAATTTCTGGAGGATATTAGTGTCAAC TGTGTGGGGTATAATACGCCGTAGGCCCTAATATGCAGGCAAGTCCATTA ATTACGCCAAAGGTCACAGGTTAGGCACGCAGCCAGGATCCAAGGAGCAA TAATAATGTTGTATGAAGGCGACCTGTAAGCGAGAGCGAGAGAGCTGGTG TTTTGGTGTGAGTGCGTGGTAGAACAAAGAGGACGAAAAACACGGCTAAC GAATTCGCCGCACGACACACTCGCCGCATGGCGAATTCAAACGTATCCCA GTGAACGAATGAGAAACAAAAGGATATCTTATTGAAACTGATTAAACTAA AGACTGCCGAATAGTTATATAAAATCCAAAACCATGTCTGCGGCCGAACT CGAGGCGGAGGCTTCAGCCCAGGAGCAACAATCCCAGCAACAACAACAAA ATCAATCACAAAGCGAGGAGATAAATACAAACACTGCCATCAATGCAAAT GCAACCACAACAAATAGCTACAACAATAATTTAGATACGGAAACCCAGCT TCAGATGCACCAGGATCCGCAGCAGCAGCAGGAACTCGAGGGCAATAGCA ACAATGGCATCACAGGACTCGGCCTCAGTCTGATGAACTCCTCACCGCCG CCGCACAGCTACCGACATTCGCGGGCCTATCGCCACTTCAAGAATCCGCC ACAGCCCCACATGTGCATCCGCACCACCACGGAGGCGGGCGAGGAGCTCT TCATCAATGTCCTCAGCTGGACGCGCATTGTGATACCGCAGGAGCCCAGC GATCCCATTCCCCTTTACGGAGGCATGCGGGTACCGCCTGGCAGCCCACG CAGTCCTCCCATTGTCTTTGCCGTAATGGCCAATCCGGAGGTGCTCAAAG ACTCCGGACGTCACAGCAAAGATCCTGAGGAGCGACGAGCTATGGTGGAG CTGATGTGCGACTTTGTGGAGGCTATGAATCCAGGCGTGAAATTAGTCAG AAACGCCGTAATACTCAAGGATCGCGATATCTCCGGCGAGCTGAAGGATG TCTGGAATGCCGTTCAGGCGCAGCGCGATCGCGAGAGGGAGGAGCAGATG ATGCAGCAGCGCCAGCAGCAGCACTACCAGAACATCACCACGCAACAGAT GTTTCCCAAATCGCCGGATGCATCGCGGGCAGCTAGTGCTGGTGCTGCAG TGAACGAGGCCAGCTCGCCGCCGGCTCACTTGTCTGAGCCGCTGCTGGTA GAGCAGGGAAATGGCAATGGCAATGGCATCACCCTGGCCGTGTTTGCCCA GCAGCTGGACAACAAAGTGGCCAGCGAGCAGGGTGAGCAGCAGGAGCAAT CGCCAGTTTCGGAGGATGCTTGCGTGGATCAAACGGATGCAGGCAGCTCG CTGAATGGATCAACAACTGTGCTGGACAATCAGCCGGTGGCAGTGGAGAA CGAACCAGAAGTAAAGGTTGCACCACCGGCAGCCACAAATGGTGCTAGCA CTCCCACACCCAGCCACGCAACACCCACAGTAACAGCCACAGCCACATCA TCGCCCAGTCCAACTCCAACTCCCGTTGTTGCTCCCGTCGTTACAGCAAC TCCTCCACCTGCTGCTCCCGCAAAGAAGGAGAAACTGGGCGGCTTCCTGC CCAACGGCTGCATCTTCCCGCGCTTCAAGAACAACAAGCACAAGGACAAG GACAATAGTCACAAGGAGGGCAAGAGCAAAGAGAAGACCCTGCTGAATGC GCTGAAAAAGAGCAAAGAGAAGAAGGTGGCGCCCAGTGAACAGCCGACAG AAAAAGCCGCCGCCTCGGACAACGGAACAACGCAGTACGAGAAGAACTGC ATCAACAATCTGGAGTGCGAGGTGCAGAAGCTGGACTTGAACAGCGGCAC CAATGGCGACAATAGCATGTTCATCAAGCTGAAAGTTTCGCCGGCCAATG CCACAGCAGCGGCAGCGGCGGCCAAGTAGAGATAATCCTGAATTTACACA CAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9400111..9401114 | 2351..1348 | 4915 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 9401437..9402326 | 1183..294 | 4360 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 9402417..9402709 | 293..1 | 1465 | 100 | Minus |
chr3L | 24539361 | chr3L | 9401183..9401353 | 1350..1180 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9408173..9409194 | 2369..1348 | 5080 | 99.8 | Minus |
3L | 28110227 | 3L | 9409517..9410406 | 1183..294 | 4450 | 100 | Minus |
3L | 28110227 | 3L | 9410497..9410789 | 293..1 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 9409263..9409433 | 1350..1180 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9401273..9402294 | 2369..1348 | 5080 | 99.8 | Minus |
3L | 28103327 | 3L | 9402617..9403506 | 1183..294 | 4450 | 100 | Minus |
3L | 28103327 | 3L | 9403597..9403889 | 293..1 | 1465 | 100 | Minus |
3L | 28103327 | 3L | 9402363..9402533 | 1350..1180 | 855 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2279..2522 | 729..963 | 196 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6888 | 776..962 | 188 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2533 | 770..953 | 182 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2992 | 770..965 | 171 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2494 | 721..878 | 155 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2512 | 761..930 | 154 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2673 | 774..961 | 143 | 56.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1117 | 1443..1498 | 135 | 75.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2694..2884 | 766..962 | 134 | 59.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1127..1256 | 770..893 | 133 | 59.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3249..3417 | 727..899 | 125 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2390 | 1420..1498 | 124 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1491..1606 | 758..877 | 121 | 60.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9401183..9401352 | 1181..1350 | 100 | <- | Minus |
chr3L | 9402417..9402709 | 1..293 | 100 | Minus | |
chr3L | 9400111..9401111 | 1351..2351 | 99 | <- | Minus |
chr3L | 9401440..9402326 | 294..1180 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 1..1596 | 734..2329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 1..1596 | 734..2329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 1..1596 | 734..2329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 1..1596 | 734..2329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 43..2393 | 1..2351 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 43..2393 | 1..2351 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 44..2394 | 1..2351 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 43..2393 | 1..2351 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4022-RA | 44..2394 | 1..2351 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9408191..9409191 | 1351..2351 | 100 | <- | Minus |
3L | 9409263..9409432 | 1181..1350 | 100 | <- | Minus |
3L | 9409520..9410406 | 294..1180 | 100 | <- | Minus |
3L | 9410497..9410789 | 1..293 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9408191..9409191 | 1351..2351 | 100 | <- | Minus |
3L | 9409263..9409432 | 1181..1350 | 100 | <- | Minus |
3L | 9409520..9410406 | 294..1180 | 100 | <- | Minus |
3L | 9410497..9410789 | 1..293 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9408191..9409191 | 1351..2351 | 100 | <- | Minus |
3L | 9409263..9409432 | 1181..1350 | 100 | <- | Minus |
3L | 9409520..9410406 | 294..1180 | 100 | <- | Minus |
3L | 9410497..9410789 | 1..293 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9401291..9402291 | 1351..2351 | 100 | <- | Minus |
arm_3L | 9402363..9402532 | 1181..1350 | 100 | <- | Minus |
arm_3L | 9402620..9403506 | 294..1180 | 100 | <- | Minus |
arm_3L | 9403597..9403889 | 1..293 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9401291..9402291 | 1351..2351 | 100 | <- | Minus |
3L | 9402363..9402532 | 1181..1350 | 100 | <- | Minus |
3L | 9402620..9403506 | 294..1180 | 100 | <- | Minus |
3L | 9403597..9403889 | 1..293 | 100 | Minus |
Translation from 733 to 2328
> LD09868.pep MSAAELEAEASAQEQQSQQQQQNQSQSEEINTNTAINANATTTNSYNNNL DTETQLQMHQDPQQQQELEGNSNNGITGLGLSLMNSSPPPHSYRHSRAYR HFKNPPQPHMCIRTTTEAGEELFINVLSWTRIVIPQEPSDPIPLYGGMRV PPGSPRSPPIVFAVMANPEVLKDSGRHSKDPEERRAMVELMCDFVEAMNP GVKLVRNAVILKDRDISGELKDVWNAVQAQRDREREEQMMQQRQQQHYQN ITTQQMFPKSPDASRAASAGAAVNEASSPPAHLSEPLLVEQGNGNGNGIT LAVFAQQLDNKVASEQGEQQEQSPVSEDACVDQTDAGSSLNGSTTVLDNQ PVAVENEPEVKVAPPAATNGASTPTPSHATPTVTATATSSPSPTPTPVVA PVVTATPPPAAPAKKEKLGGFLPNGCIFPRFKNNKHKDKDNSHKEGKSKE KTLLNALKKSKEKKVAPSEQPTEKAAASDNGTTQYEKNCINNLECEVQKL DLNSGTNGDNSMFIKLKVSPANATAAAAAAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23735-PA | 526 | GF23735-PA | 1..525 | 1..529 | 1748 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14043-PA | 533 | GG14043-PA | 30..522 | 30..520 | 2089 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16321-PA | 548 | GH16321-PA | 1..535 | 1..518 | 1503 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4022-PC | 531 | CG4022-PC | 1..531 | 1..531 | 2749 | 100 | Plus |
CG4022-PB | 531 | CG4022-PB | 1..531 | 1..531 | 2749 | 100 | Plus |
CG4022-PA | 531 | CG4022-PA | 1..531 | 1..531 | 2749 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13266-PA | 565 | GI13266-PA | 1..551 | 1..517 | 1527 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22450-PA | 381 | GL22450-PA | 30..331 | 32..328 | 1060 | 77 | Plus |
Dper\GL22450-PA | 381 | GL22450-PA | 297..369 | 447..518 | 293 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17879-PA | 526 | GA17879-PA | 30..514 | 32..518 | 1703 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24877-PA | 323 | GM24877-PA | 4..323 | 204..531 | 1606 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12927-PA | 390 | GD12927-PA | 153..379 | 294..520 | 935 | 94.7 | Plus |
Dsim\GD12927-PA | 390 | GD12927-PA | 30..148 | 30..149 | 659 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12036-PA | 570 | GJ12036-PA | 1..556 | 1..517 | 1565 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17032-PA | 582 | GK17032-PA | 99..568 | 72..519 | 1432 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21246-PA | 531 | GE21246-PA | 30..520 | 30..520 | 2163 | 94.3 | Plus |
Translation from 733 to 2328
> LD09868.hyp MSAAELEAEASAQEQQSQQQQQNQSQSEEINTNTAINANATTTNSYNNNL DTETQLQMHQDPQQQQELEGNSNNGITGLGLSLMNSSPPPHSYRHSRAYR HFKNPPQPHMCIRTTTEAGEELFINVLSWTRIVIPQEPSDPIPLYGGMRV PPGSPRSPPIVFAVMANPEVLKDSGRHSKDPEERRAMVELMCDFVEAMNP GVKLVRNAVILKDRDISGELKDVWNAVQAQRDREREEQMMQQRQQQHYQN ITTQQMFPKSPDASRAASAGAAVNEASSPPAHLSEPLLVEQGNGNGNGIT LAVFAQQLDNKVASEQGEQQEQSPVSEDACVDQTDAGSSLNGSTTVLDNQ PVAVENEPEVKVAPPAATNGASTPTPSHATPTVTATATSSPSPTPTPVVA PVVTATPPPAAPAKKEKLGGFLPNGCIFPRFKNNKHKDKDNSHKEGKSKE KTLLNALKKSKEKKVAPSEQPTEKAAASDNGTTQYEKNCINNLECEVQKL DLNSGTNGDNSMFIKLKVSPANATAAAAAAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4022-PC | 531 | CG4022-PC | 1..531 | 1..531 | 2749 | 100 | Plus |
CG4022-PB | 531 | CG4022-PB | 1..531 | 1..531 | 2749 | 100 | Plus |
CG4022-PA | 531 | CG4022-PA | 1..531 | 1..531 | 2749 | 100 | Plus |