Clone LD09868 Report

Search the DGRC for LD09868

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:98
Well:68
Vector:pBS SK-
Associated Gene/TranscriptCG4022-RA
Protein status:LD09868.pep: gold
Preliminary Size:2343
Sequenced Size:2369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4022 2001-01-01 Release 2 assignment
CG4022 2001-10-10 Blastp of sequenced clone
CG4022 2003-01-01 Sim4 clustering to Release 3
CG4022 2008-04-29 Release 5.5 accounting
CG4022 2008-08-15 Release 5.9 accounting
CG4022 2008-12-18 5.12 accounting

Clone Sequence Records

LD09868.complete Sequence

2369 bp (2369 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061113

> LD09868.complete
TTTTTTGTTTATGTTGGGTTGTCGGAAAAATCGGCTGTTTTCCGTGTGTC
CGTCTGCCATGAAAAGCTGCTAAAAAGCTAAATATAAAAATCAGCGCAGC
ACACACGTTCCGCTGCCTGCATTGTTTGCCCATTCTAATGGGAAATTATG
TGAGTGCGAGTCAGGAAAACGCATCGTGTGTGTATATATACATATATACA
TAAGTATGTAACTGCGCCCGTTTGTTTGTGTGTGTTTTTGTGTGCATGGT
GCAATGGAAAAGTGATTATTATAAATGAAAATCAGTGAAATGTTCAACCA
ACTCCCACTTGTGCGTGTGTAGGAAGGCAGAAGGGTGTTTTGCATTCGTG
TGCGTGCCAGATAAAAAGACTTTGAATTTCTGGAGGATATTAGTGTCAAC
TGTGTGGGGTATAATACGCCGTAGGCCCTAATATGCAGGCAAGTCCATTA
ATTACGCCAAAGGTCACAGGTTAGGCACGCAGCCAGGATCCAAGGAGCAA
TAATAATGTTGTATGAAGGCGACCTGTAAGCGAGAGCGAGAGAGCTGGTG
TTTTGGTGTGAGTGCGTGGTAGAACAAAGAGGACGAAAAACACGGCTAAC
GAATTCGCCGCACGACACACTCGCCGCATGGCGAATTCAAACGTATCCCA
GTGAACGAATGAGAAACAAAAGGATATCTTATTGAAACTGATTAAACTAA
AGACTGCCGAATAGTTATATAAAATCCAAAACCATGTCTGCGGCCGAACT
CGAGGCGGAGGCTTCAGCCCAGGAGCAACAATCCCAGCAACAACAACAAA
ATCAATCACAAAGCGAGGAGATAAATACAAACACTGCCATCAATGCAAAT
GCAACCACAACAAATAGCTACAACAATAATTTAGATACGGAAACCCAGCT
TCAGATGCACCAGGATCCGCAGCAGCAGCAGGAACTCGAGGGCAATAGCA
ACAATGGCATCACAGGACTCGGCCTCAGTCTGATGAACTCCTCACCGCCG
CCGCACAGCTACCGACATTCGCGGGCCTATCGCCACTTCAAGAATCCGCC
ACAGCCCCACATGTGCATCCGCACCACCACGGAGGCGGGCGAGGAGCTCT
TCATCAATGTCCTCAGCTGGACGCGCATTGTGATACCGCAGGAGCCCAGC
GATCCCATTCCCCTTTACGGAGGCATGCGGGTACCGCCTGGCAGCCCACG
CAGTCCTCCCATTGTCTTTGCCGTAATGGCCAATCCGGAGGTGCTCAAAG
ACTCCGGACGTCACAGCAAAGATCCTGAGGAGCGACGAGCTATGGTGGAG
CTGATGTGCGACTTTGTGGAGGCTATGAATCCAGGCGTGAAATTAGTCAG
AAACGCCGTAATACTCAAGGATCGCGATATCTCCGGCGAGCTGAAGGATG
TCTGGAATGCCGTTCAGGCGCAGCGCGATCGCGAGAGGGAGGAGCAGATG
ATGCAGCAGCGCCAGCAGCAGCACTACCAGAACATCACCACGCAACAGAT
GTTTCCCAAATCGCCGGATGCATCGCGGGCAGCTAGTGCTGGTGCTGCAG
TGAACGAGGCCAGCTCGCCGCCGGCTCACTTGTCTGAGCCGCTGCTGGTA
GAGCAGGGAAATGGCAATGGCAATGGCATCACCCTGGCCGTGTTTGCCCA
GCAGCTGGACAACAAAGTGGCCAGCGAGCAGGGTGAGCAGCAGGAGCAAT
CGCCAGTTTCGGAGGATGCTTGCGTGGATCAAACGGATGCAGGCAGCTCG
CTGAATGGATCAACAACTGTGCTGGACAATCAGCCGGTGGCAGTGGAGAA
CGAACCAGAAGTAAAGGTTGCACCACCGGCAGCCACAAATGGTGCTAGCA
CTCCCACACCCAGCCACGCAACACCCACAGTAACAGCCACAGCCACATCA
TCGCCCAGTCCAACTCCAACTCCCGTTGTTGCTCCCGTCGTTACAGCAAC
TCCTCCACCTGCTGCTCCCGCAAAGAAGGAGAAACTGGGCGGCTTCCTGC
CCAACGGCTGCATCTTCCCGCGCTTCAAGAACAACAAGCACAAGGACAAG
GACAATAGTCACAAGGAGGGCAAGAGCAAAGAGAAGACCCTGCTGAATGC
GCTGAAAAAGAGCAAAGAGAAGAAGGTGGCGCCCAGTGAACAGCCGACAG
AAAAAGCCGCCGCCTCGGACAACGGAACAACGCAGTACGAGAAGAACTGC
ATCAACAATCTGGAGTGCGAGGTGCAGAAGCTGGACTTGAACAGCGGCAC
CAATGGCGACAATAGCATGTTCATCAAGCTGAAAGTTTCGCCGGCCAATG
CCACAGCAGCGGCAGCGGCGGCCAAGTAGAGATAATCCTGAATTTACACA
CAAAAAAAAAAAAAAAAAA

LD09868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4022.e 3329 CG4022.e 45..2413 1..2369 11815 99.9 Plus
CG4022.d 3832 CG4022.d 45..2413 1..2369 11815 99.9 Plus
CG4022.a 2925 CG4022.a 45..2413 1..2369 11815 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9400111..9401114 2351..1348 4915 99.3 Minus
chr3L 24539361 chr3L 9401437..9402326 1183..294 4360 99.3 Minus
chr3L 24539361 chr3L 9402417..9402709 293..1 1465 100 Minus
chr3L 24539361 chr3L 9401183..9401353 1350..1180 855 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9408173..9409194 2369..1348 5080 99.8 Minus
3L 28110227 3L 9409517..9410406 1183..294 4450 100 Minus
3L 28110227 3L 9410497..9410789 293..1 1465 100 Minus
3L 28110227 3L 9409263..9409433 1350..1180 855 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9401273..9402294 2369..1348 5080 99.8 Minus
3L 28103327 3L 9402617..9403506 1183..294 4450 100 Minus
3L 28103327 3L 9403597..9403889 293..1 1465 100 Minus
3L 28103327 3L 9402363..9402533 1350..1180 855 100 Minus
Blast to na_te.dros performed 2019-03-16 19:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2279..2522 729..963 196 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6888 776..962 188 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2533 770..953 182 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2796..2992 770..965 171 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2494 721..878 155 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2512 761..930 154 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2488..2673 774..961 143 56.8 Plus
roo 9092 roo DM_ROO 9092bp 1062..1117 1443..1498 135 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2694..2884 766..962 134 59.5 Plus
roo 9092 roo DM_ROO 9092bp 1127..1256 770..893 133 59.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3249..3417 727..899 125 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2390 1420..1498 124 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1491..1606 758..877 121 60.3 Plus

LD09868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:09:26 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9401183..9401352 1181..1350 100 <- Minus
chr3L 9402417..9402709 1..293 100   Minus
chr3L 9400111..9401111 1351..2351 99 <- Minus
chr3L 9401440..9402326 294..1180 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:39 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 1..1596 734..2329 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:16 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 1..1596 734..2329 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:39 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 1..1596 734..2329 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:58 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 1..1596 734..2329 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:23 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 43..2393 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:38 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 43..2393 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:16 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 44..2394 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:40 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 43..2393 1..2351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:58 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
CG4022-RA 44..2394 1..2351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:26 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9408191..9409191 1351..2351 100 <- Minus
3L 9409263..9409432 1181..1350 100 <- Minus
3L 9409520..9410406 294..1180 100 <- Minus
3L 9410497..9410789 1..293 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:26 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9408191..9409191 1351..2351 100 <- Minus
3L 9409263..9409432 1181..1350 100 <- Minus
3L 9409520..9410406 294..1180 100 <- Minus
3L 9410497..9410789 1..293 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:26 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9408191..9409191 1351..2351 100 <- Minus
3L 9409263..9409432 1181..1350 100 <- Minus
3L 9409520..9410406 294..1180 100 <- Minus
3L 9410497..9410789 1..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:16 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9401291..9402291 1351..2351 100 <- Minus
arm_3L 9402363..9402532 1181..1350 100 <- Minus
arm_3L 9402620..9403506 294..1180 100 <- Minus
arm_3L 9403597..9403889 1..293 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:46 Download gff for LD09868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9401291..9402291 1351..2351 100 <- Minus
3L 9402363..9402532 1181..1350 100 <- Minus
3L 9402620..9403506 294..1180 100 <- Minus
3L 9403597..9403889 1..293 100   Minus

LD09868.pep Sequence

Translation from 733 to 2328

> LD09868.pep
MSAAELEAEASAQEQQSQQQQQNQSQSEEINTNTAINANATTTNSYNNNL
DTETQLQMHQDPQQQQELEGNSNNGITGLGLSLMNSSPPPHSYRHSRAYR
HFKNPPQPHMCIRTTTEAGEELFINVLSWTRIVIPQEPSDPIPLYGGMRV
PPGSPRSPPIVFAVMANPEVLKDSGRHSKDPEERRAMVELMCDFVEAMNP
GVKLVRNAVILKDRDISGELKDVWNAVQAQRDREREEQMMQQRQQQHYQN
ITTQQMFPKSPDASRAASAGAAVNEASSPPAHLSEPLLVEQGNGNGNGIT
LAVFAQQLDNKVASEQGEQQEQSPVSEDACVDQTDAGSSLNGSTTVLDNQ
PVAVENEPEVKVAPPAATNGASTPTPSHATPTVTATATSSPSPTPTPVVA
PVVTATPPPAAPAKKEKLGGFLPNGCIFPRFKNNKHKDKDNSHKEGKSKE
KTLLNALKKSKEKKVAPSEQPTEKAAASDNGTTQYEKNCINNLECEVQKL
DLNSGTNGDNSMFIKLKVSPANATAAAAAAK*

LD09868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23735-PA 526 GF23735-PA 1..525 1..529 1748 74.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14043-PA 533 GG14043-PA 30..522 30..520 2089 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16321-PA 548 GH16321-PA 1..535 1..518 1503 68.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4022-PC 531 CG4022-PC 1..531 1..531 2749 100 Plus
CG4022-PB 531 CG4022-PB 1..531 1..531 2749 100 Plus
CG4022-PA 531 CG4022-PA 1..531 1..531 2749 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13266-PA 565 GI13266-PA 1..551 1..517 1527 65.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22450-PA 381 GL22450-PA 30..331 32..328 1060 77 Plus
Dper\GL22450-PA 381 GL22450-PA 297..369 447..518 293 86.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17879-PA 526 GA17879-PA 30..514 32..518 1703 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24877-PA 323 GM24877-PA 4..323 204..531 1606 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12927-PA 390 GD12927-PA 153..379 294..520 935 94.7 Plus
Dsim\GD12927-PA 390 GD12927-PA 30..148 30..149 659 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12036-PA 570 GJ12036-PA 1..556 1..517 1565 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17032-PA 582 GK17032-PA 99..568 72..519 1432 67.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21246-PA 531 GE21246-PA 30..520 30..520 2163 94.3 Plus

LD09868.hyp Sequence

Translation from 733 to 2328

> LD09868.hyp
MSAAELEAEASAQEQQSQQQQQNQSQSEEINTNTAINANATTTNSYNNNL
DTETQLQMHQDPQQQQELEGNSNNGITGLGLSLMNSSPPPHSYRHSRAYR
HFKNPPQPHMCIRTTTEAGEELFINVLSWTRIVIPQEPSDPIPLYGGMRV
PPGSPRSPPIVFAVMANPEVLKDSGRHSKDPEERRAMVELMCDFVEAMNP
GVKLVRNAVILKDRDISGELKDVWNAVQAQRDREREEQMMQQRQQQHYQN
ITTQQMFPKSPDASRAASAGAAVNEASSPPAHLSEPLLVEQGNGNGNGIT
LAVFAQQLDNKVASEQGEQQEQSPVSEDACVDQTDAGSSLNGSTTVLDNQ
PVAVENEPEVKVAPPAATNGASTPTPSHATPTVTATATSSPSPTPTPVVA
PVVTATPPPAAPAKKEKLGGFLPNGCIFPRFKNNKHKDKDNSHKEGKSKE
KTLLNALKKSKEKKVAPSEQPTEKAAASDNGTTQYEKNCINNLECEVQKL
DLNSGTNGDNSMFIKLKVSPANATAAAAAAK*

LD09868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4022-PC 531 CG4022-PC 1..531 1..531 2749 100 Plus
CG4022-PB 531 CG4022-PB 1..531 1..531 2749 100 Plus
CG4022-PA 531 CG4022-PA 1..531 1..531 2749 100 Plus