BDGP Sequence Production Resources |
Search the DGRC for LD09907
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 99 |
Well: | 7 |
Vector: | pBS SK- |
Associated Gene/Transcript | Hex-A-RA |
Protein status: | LD09907.pep: gold |
Preliminary Size: | 2510 |
Sequenced Size: | 2535 |
Gene | Date | Evidence |
---|---|---|
CG3001 | 2001-01-01 | Release 2 assignment |
CG3001 | 2001-11-02 | Blastp of sequenced clone |
CG3001 | 2003-01-01 | Sim4 clustering to Release 3 |
Hex-A | 2008-04-29 | Release 5.5 accounting |
Hex-A | 2008-08-15 | Release 5.9 accounting |
Hex-A | 2008-12-18 | 5.12 accounting |
2535 bp (2535 high quality bases) assembled on 2001-11-02
GenBank Submission: AY069391
> LD09907.complete TGAATTTAATTTCGTAAAAAACGTTCCGAGCGTTTGGACGCGTGCAGCGG ACGAAAATAAAACACGGCGAGAGCGAGAATCGTGTGTGTGGACACTCAAA GACTCAAAATTGAAACCAACTCGAAAAGGTTGCACTGCAAATGCCCAAGT AGAAAAGCCAACGCGAGTGTGCACATCGAATACGAAAATTGTAAACGTTT TTTTTTTGCCGTGTGAGTGCAAGCGCATAAGATCGAAGAAAAACAGCCAG AGCAAGAAAGAACCGAAAAAAGGCAGAGAGAATCAAAAAAGAAAAAAGGA AAAAAAAAACAAGCAGGAAAACACCAACATAATAATGGATCGGGAGCTGA ACGGGGCGATGAAGAGCGTGTCCATAAATAGCGCCCAACTGAATGGTCAC AATAACGGTGGCGGGCTAGATGAAACGGACCGCGTGGGCGTGGCACAGGG GGCGGCACTGAGTGCAACAGAGAAAATTACAACAACGACGGCGGCAGCTA CAAAATCAGCGACAGCGACCACAAATGCAACCACAGCAACAGCCACAACC ACAAATCTTACAACTCACAGCCCGCAGCAAATTGCACTCTTATCCGCTGC AGAGAAAAGTAAGATGGTGCACGAGTTATGTCAGCAGCTGCTTCTAACGG ACGAACAGGTGCAGGAGCTGTGCTACCGCATCCTGCACGAGCTGCGCCGC GGCCTGGCCAAGGATACACATCCCAAGGCGAATGTCAAGTGCTTCGTAAC GTATGTGCAGGATCTGCCCAATGGCAATGAGCGTGGCAAGTTCTTGGCCT TGGATCTGGGTGGCACCAACTTCCGGGTGCTGCTCATCCATCTGCAGGAG AACAACGATTTTCAAATGGAGTCCCGCATCTATGCCATACCGCAGCACAT TATGATTGGATCGGGTACACAGCTATTCGATCACATCGCCGAATGTCTGT CCAACTTTATGGCCGAGCACAATGTGTACAAGGAGCGTTTGCCACTCGGT TTCACCTTCTCGTTCCCGCTGCGCCAATTGGGTCTGACCAAGGGCCTGCT GGAGACCTGGACCAAGGGCTTCAACTGCGCTGGCGTCGTCAACGAGGATG TTGTCCAGTTGCTAAAGGATGCCATCGCACGGCGCGGCGATGTCCAGATC GATGTGTGTGCCATACTCAATGACACCACTGGCACGCTGATGAGCTGCGC CTGGAAGAATCACAACTGCAAGATCGGTCTGATTGTCGGCACCGGTGCAA ATGCCTGCTATATGGAGCGTGTGGAGGAGGCGGAGCTCTTCGCCGCCGAG GATCCGCGCAAGAAGCACGTCCTGATCAACACGGAATGGGGCGCATTCGG CGACAATGGCGCACTGGACTTTGTGCGCACCGAATTCGATCGGGACATCG ATGTGCACAGCATCAATCCGGGCAAGCAGACGTTCGAGAAGATGATATCG GGCATGTATATGGGCGAGCTGGTGCGTCTGGTGCTGGTGAAGATGACCCA GGCGGGTATACTCTTCAATGGACAGGATTCCGAAGTGCTAAACACCCGCG GACTGTTCTTCACCAAGTATGTGAGCGAAATTGAAGCTGACGAGCCAGGC AACTTCACCAATTGCCGCCTGGTGCTGGAGGAGCTCGGTCTGACCAATGC CACCGACGGGGACTGCGCCAATGTGCGGTACATCTGCGAGTGCGTCTCGA AACGGGCTGCCCACCTGGTGTCCGCCGGCATTGCCACGCTGATCAACAAA ATGGACGAGCCAACGGTGACGGTGGGCGTCGATGGCAGTGTGTACCGCTT CCATCCCAAGTTCCATAACCTGATGGTCGAGAAGATCTCGCAGCTGATCA AGCCGGGCATCACCTTCGATCTGATGCTGTCCGAGGACGGTTCCGGTCGT GGAGCTGCCCTGGTGGCGGCCGTCGCCTGTCGCGAAGACATACTCAATGG CAAGAAGTAGGATGGATAGGGAGCTGGAGCTGGATCAGGAACCAGGAGGA GGAGCCGCTGGAGCAGCTGGAGCAGTCCTAAGAGATACAGCAACACACCC ACACAACCACAAAAACAGCAGAGCAAATGAGAAATACCTAGTAAACGGCC ACGGTGGCGTATGCGTAATAATTACAGTAGAGCCACGCTAACTCACAAAA GCCCTATAGCCAAACGATATGAAAAAATGAAGCTGCCACGACGAAAAGTA ATCGAAAAGCCCACGAAAAACTTATATGTGCATACGTAGGGCATTTGTGA GTTGGCGCGACTTGGCTTTAGTATTTTAATTAGGCAAAAACCAGGTTTTT CACTACAAACACAAGCGTAACAGAAACCCCCCCACTAAGAGACAGAAGAT CTGTGGCATTCTATCTCTTTCTCTCCTAGTAAAAGAAAACAAAGAAGAAG AAAAAACACTATGCTTAATGATTATGGATCGATTTTCGATTTTTGTTGAA AATTTGTTATGCTATTATATATATATATATTTTACAAGAAAACATAATAT ACACACACTAAAAACATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 9477600..9480116 | 1..2517 | 12585 | 100 | Plus |
chr3R | 27901430 | chr3R | 22273916..22274046 | 701..831 | 250 | 79.4 | Plus |
chr2R | 21145070 | chr2R | 11107241..11107357 | 835..719 | 210 | 78.6 | Minus |
chr3R | 27901430 | chr3R | 22274720..22274788 | 1414..1482 | 195 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 9585885..9588403 | 1..2519 | 12595 | 100 | Plus |
3R | 32079331 | 3R | 26450890..26451020 | 701..831 | 250 | 79.4 | Plus |
2R | 25286936 | 2R | 15220031..15220147 | 835..719 | 210 | 78.6 | Minus |
3R | 32079331 | 3R | 26451694..26451762 | 1414..1482 | 195 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 9593983..9596501 | 1..2519 | 12595 | 100 | Plus |
3R | 31820162 | 3R | 26191755..26191851 | 735..831 | 245 | 83.5 | Plus |
2R | 25260384 | 2R | 15221230..15221346 | 835..719 | 210 | 78.6 | Minus |
3R | 31820162 | 3R | 26192525..26192593 | 1414..1482 | 195 | 85.5 | Plus |
2R | 25260384 | 2R | 15220114..15220167 | 1927..1874 | 150 | 85.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2575 | 450..733 | 191 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2654 | 480..670 | 176 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1286..1589 | 242..551 | 168 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2494 | 465..553 | 168 | 67.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 9477909..9478063 | 310..464 | 100 | == | Plus |
chrX | 9477600..9477834 | 1..235 | 100 | == | Plus |
chrX | 9478154..9480116 | 555..2517 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..1626 | 335..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..1626 | 335..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..1626 | 335..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..1626 | 335..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..1626 | 335..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RB | 1..2517 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RB | 1..2517 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RA | 1..2512 | 6..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RB | 1..2517 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hex-A-RC | 211..2727 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9585885..9588401 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9585885..9588401 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9585885..9588401 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 9479918..9482434 | 1..2517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9593983..9596499 | 1..2517 | 100 | Plus |
Translation from 0 to 1959
> LD09907.hyp EFNFVKNVPSVWTRAADENKTRRERESCVWTLKDSKLKPTRKGCTANAQV EKPTRVCTSNTKIVNVFFLPCECKRIRSKKNSQSKKEPKKGRENQKRKKE KKNKQENTNIIMDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQG AALSATEKITTTTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAA EKSKMVHELCQQLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVT YVQDLPNGNERGKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHI MIGSGTQLFDHIAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLL ETWTKGFNCAGVVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCA WKNHNCKIGLIVGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFG DNGALDFVRTEFDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQ AGILFNGQDSEVLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNA TDGDCANVRYICECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRF HPKFHNLMVEKISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNG KK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hex-A-PA | 541 | CG3001-PA | 1..541 | 112..652 | 2801 | 100 | Plus |
Hex-A-PC | 448 | CG3001-PC | 1..448 | 205..652 | 2349 | 100 | Plus |
Hex-A-PB | 448 | CG3001-PB | 1..448 | 205..652 | 2349 | 100 | Plus |
Hex-t2-PA | 486 | CG32849-PA | 50..479 | 214..642 | 1283 | 56.5 | Plus |
Hex-C-PA | 454 | CG8094-PA | 6..452 | 206..644 | 1243 | 54.4 | Plus |
Translation from 334 to 1959
> LD09907.pep MDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQGAALSATEKITT TTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAAEKSKMVHELCQ QLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVTYVQDLPNGNER GKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHIMIGSGTQLFDH IAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLLETWTKGFNCAG VVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCAWKNHNCKIGLI VGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFGDNGALDFVRTE FDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQAGILFNGQDSE VLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNATDGDCANVRYI CECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRFHPKFHNLMVEK ISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNGKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22320-PA | 539 | GF22320-PA | 1..539 | 1..541 | 2452 | 87.3 | Plus |
Dana\GF12622-PA | 454 | GF12622-PA | 6..452 | 95..533 | 1271 | 55.7 | Plus |
Dana\GF20727-PA | 447 | GF20727-PA | 13..435 | 102..523 | 1250 | 53.9 | Plus |
Dana\GF20735-PA | 469 | GF20735-PA | 18..453 | 95..531 | 907 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18317-PA | 539 | GG18317-PA | 1..539 | 1..541 | 2858 | 98.5 | Plus |
Dere\GG11478-PA | 453 | GG11478-PA | 16..446 | 102..531 | 1300 | 55.5 | Plus |
Dere\GG22367-PA | 454 | GG22367-PA | 6..452 | 95..533 | 1256 | 55.4 | Plus |
Dere\GG11476-PA | 465 | GG11476-PA | 14..449 | 95..531 | 912 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12375-PA | 538 | GH12375-PA | 6..538 | 4..540 | 2357 | 84.3 | Plus |
Dgri\GH19419-PA | 449 | GH19419-PA | 12..447 | 97..531 | 1316 | 55 | Plus |
Dgri\GH21465-PA | 454 | GH21465-PA | 6..452 | 95..533 | 1268 | 54.6 | Plus |
Dgri\GH19418-PA | 459 | GH19418-PA | 14..448 | 96..531 | 945 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hex-A-PA | 541 | CG3001-PA | 1..541 | 1..541 | 2801 | 100 | Plus |
Hex-A-PC | 448 | CG3001-PC | 1..448 | 94..541 | 2349 | 100 | Plus |
Hex-A-PB | 448 | CG3001-PB | 1..448 | 94..541 | 2349 | 100 | Plus |
Hex-t2-PA | 486 | CG32849-PA | 50..479 | 103..531 | 1283 | 56.5 | Plus |
Hex-C-PA | 454 | CG8094-PA | 6..452 | 95..533 | 1243 | 54.4 | Plus |
Hex-t1-PA | 465 | CG33102-PA | 14..449 | 95..531 | 870 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14754-PA | 547 | GI14754-PA | 1..547 | 1..540 | 2413 | 85.6 | Plus |
Dmoj\GI22624-PA | 451 | GI22624-PA | 12..451 | 96..534 | 1305 | 53 | Plus |
Dmoj\GI19942-PA | 454 | GI19942-PA | 6..452 | 95..533 | 1267 | 55.3 | Plus |
Dmoj\GI22621-PA | 454 | GI22621-PA | 15..448 | 97..531 | 933 | 39.5 | Plus |
Dmoj\GI22622-PA | 458 | GI22622-PA | 15..454 | 97..537 | 930 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21847-PA | 456 | GL21847-PA | 19..454 | 102..536 | 1365 | 56.7 | Plus |
Dper\GL11018-PA | 454 | GL11018-PA | 6..452 | 95..533 | 1298 | 54.6 | Plus |
Dper\GL15877-PA | 397 | GL15877-PA | 222..397 | 366..541 | 894 | 94.9 | Plus |
Dper\GL21996-PA | 466 | GL21996-PA | 15..450 | 95..531 | 866 | 35.7 | Plus |
Dper\GL15877-PA | 397 | GL15877-PA | 1..227 | 1..219 | 732 | 69.2 | Plus |
Dper\GL21460-PA | 66 | GL21460-PA | 1..64 | 473..536 | 201 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15574-PA | 549 | GA15574-PA | 1..549 | 1..541 | 2379 | 84.3 | Plus |
Dpse\GA26424-PA | 456 | GA26424-PA | 19..454 | 102..536 | 1364 | 56.7 | Plus |
Dpse\GA20820-PA | 454 | GA20820-PA | 6..452 | 95..533 | 1298 | 54.6 | Plus |
Dpse\GA17282-PA | 466 | GA17282-PA | 15..450 | 95..531 | 860 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11376-PA | 388 | GM11376-PA | 1..376 | 1..373 | 1485 | 85.7 | Plus |
Dsec\GM10321-PA | 453 | GM10321-PA | 16..448 | 102..533 | 1319 | 55.4 | Plus |
Dsec\GM20151-PA | 454 | GM20151-PA | 6..452 | 95..533 | 1235 | 53.9 | Plus |
Dsec\GM10320-PA | 465 | GM10320-PA | 14..449 | 95..531 | 894 | 36.4 | Plus |
Dsec\GM11377-PA | 155 | GM11377-PA | 1..155 | 387..541 | 827 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Hex-t2-PA | 453 | GD21282-PA | 16..448 | 102..533 | 1325 | 55.9 | Plus |
Dsim\GD25630-PA | 454 | GD25630-PA | 6..452 | 95..533 | 1245 | 54.4 | Plus |
Dsim\Hex-t1-PA | 400 | GD21281-PA | 14..236 | 95..317 | 486 | 38.6 | Plus |
Dsim\GD24777-PA | 69 | GD24777-PA | 1..69 | 473..541 | 368 | 100 | Plus |
Dsim\Hex-t1-PA | 400 | GD21281-PA | 228..384 | 375..531 | 243 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19157-PA | 561 | GJ19157-PA | 1..561 | 1..540 | 2358 | 82.8 | Plus |
Dvir\GJ23870-PA | 450 | GJ23870-PA | 6..450 | 90..533 | 1278 | 52.8 | Plus |
Dvir\GJ15111-PA | 454 | GJ15111-PA | 6..452 | 95..533 | 1271 | 54.7 | Plus |
Dvir\GJ23866-PA | 451 | GJ23866-PA | 12..447 | 96..530 | 1178 | 46.8 | Plus |
Dvir\GJ23869-PA | 458 | GJ23869-PA | 14..447 | 97..531 | 955 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16160-PA | 535 | GK16160-PA | 1..535 | 1..540 | 2396 | 84.1 | Plus |
Dwil\GK19144-PA | 471 | GK19144-PA | 2..455 | 66..523 | 1319 | 52.5 | Plus |
Dwil\GK18967-PA | 460 | GK18967-PA | 12..439 | 97..523 | 1308 | 54.7 | Plus |
Dwil\GK21542-PA | 454 | GK21542-PA | 6..452 | 95..533 | 1292 | 55.7 | Plus |
Dwil\GK13969-PA | 468 | GK13969-PA | 14..448 | 95..528 | 930 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Hex-A-PA | 546 | GE17799-PA | 1..546 | 1..541 | 2880 | 98.7 | Plus |
Dyak\Hex-t2-PA | 453 | GE23669-PA | 16..446 | 102..531 | 1298 | 54.5 | Plus |
Dyak\Hex-C-PA | 454 | GE12255-PA | 6..452 | 95..533 | 1263 | 55.4 | Plus |
Dyak\Hex-t1-PA | 465 | GE23668-PA | 14..449 | 95..531 | 915 | 37.3 | Plus |