Clone LD09907 Report

Search the DGRC for LD09907

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:99
Well:7
Vector:pBS SK-
Associated Gene/TranscriptHex-A-RA
Protein status:LD09907.pep: gold
Preliminary Size:2510
Sequenced Size:2535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3001 2001-01-01 Release 2 assignment
CG3001 2001-11-02 Blastp of sequenced clone
CG3001 2003-01-01 Sim4 clustering to Release 3
Hex-A 2008-04-29 Release 5.5 accounting
Hex-A 2008-08-15 Release 5.9 accounting
Hex-A 2008-12-18 5.12 accounting

Clone Sequence Records

LD09907.complete Sequence

2535 bp (2535 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069391

> LD09907.complete
TGAATTTAATTTCGTAAAAAACGTTCCGAGCGTTTGGACGCGTGCAGCGG
ACGAAAATAAAACACGGCGAGAGCGAGAATCGTGTGTGTGGACACTCAAA
GACTCAAAATTGAAACCAACTCGAAAAGGTTGCACTGCAAATGCCCAAGT
AGAAAAGCCAACGCGAGTGTGCACATCGAATACGAAAATTGTAAACGTTT
TTTTTTTGCCGTGTGAGTGCAAGCGCATAAGATCGAAGAAAAACAGCCAG
AGCAAGAAAGAACCGAAAAAAGGCAGAGAGAATCAAAAAAGAAAAAAGGA
AAAAAAAAACAAGCAGGAAAACACCAACATAATAATGGATCGGGAGCTGA
ACGGGGCGATGAAGAGCGTGTCCATAAATAGCGCCCAACTGAATGGTCAC
AATAACGGTGGCGGGCTAGATGAAACGGACCGCGTGGGCGTGGCACAGGG
GGCGGCACTGAGTGCAACAGAGAAAATTACAACAACGACGGCGGCAGCTA
CAAAATCAGCGACAGCGACCACAAATGCAACCACAGCAACAGCCACAACC
ACAAATCTTACAACTCACAGCCCGCAGCAAATTGCACTCTTATCCGCTGC
AGAGAAAAGTAAGATGGTGCACGAGTTATGTCAGCAGCTGCTTCTAACGG
ACGAACAGGTGCAGGAGCTGTGCTACCGCATCCTGCACGAGCTGCGCCGC
GGCCTGGCCAAGGATACACATCCCAAGGCGAATGTCAAGTGCTTCGTAAC
GTATGTGCAGGATCTGCCCAATGGCAATGAGCGTGGCAAGTTCTTGGCCT
TGGATCTGGGTGGCACCAACTTCCGGGTGCTGCTCATCCATCTGCAGGAG
AACAACGATTTTCAAATGGAGTCCCGCATCTATGCCATACCGCAGCACAT
TATGATTGGATCGGGTACACAGCTATTCGATCACATCGCCGAATGTCTGT
CCAACTTTATGGCCGAGCACAATGTGTACAAGGAGCGTTTGCCACTCGGT
TTCACCTTCTCGTTCCCGCTGCGCCAATTGGGTCTGACCAAGGGCCTGCT
GGAGACCTGGACCAAGGGCTTCAACTGCGCTGGCGTCGTCAACGAGGATG
TTGTCCAGTTGCTAAAGGATGCCATCGCACGGCGCGGCGATGTCCAGATC
GATGTGTGTGCCATACTCAATGACACCACTGGCACGCTGATGAGCTGCGC
CTGGAAGAATCACAACTGCAAGATCGGTCTGATTGTCGGCACCGGTGCAA
ATGCCTGCTATATGGAGCGTGTGGAGGAGGCGGAGCTCTTCGCCGCCGAG
GATCCGCGCAAGAAGCACGTCCTGATCAACACGGAATGGGGCGCATTCGG
CGACAATGGCGCACTGGACTTTGTGCGCACCGAATTCGATCGGGACATCG
ATGTGCACAGCATCAATCCGGGCAAGCAGACGTTCGAGAAGATGATATCG
GGCATGTATATGGGCGAGCTGGTGCGTCTGGTGCTGGTGAAGATGACCCA
GGCGGGTATACTCTTCAATGGACAGGATTCCGAAGTGCTAAACACCCGCG
GACTGTTCTTCACCAAGTATGTGAGCGAAATTGAAGCTGACGAGCCAGGC
AACTTCACCAATTGCCGCCTGGTGCTGGAGGAGCTCGGTCTGACCAATGC
CACCGACGGGGACTGCGCCAATGTGCGGTACATCTGCGAGTGCGTCTCGA
AACGGGCTGCCCACCTGGTGTCCGCCGGCATTGCCACGCTGATCAACAAA
ATGGACGAGCCAACGGTGACGGTGGGCGTCGATGGCAGTGTGTACCGCTT
CCATCCCAAGTTCCATAACCTGATGGTCGAGAAGATCTCGCAGCTGATCA
AGCCGGGCATCACCTTCGATCTGATGCTGTCCGAGGACGGTTCCGGTCGT
GGAGCTGCCCTGGTGGCGGCCGTCGCCTGTCGCGAAGACATACTCAATGG
CAAGAAGTAGGATGGATAGGGAGCTGGAGCTGGATCAGGAACCAGGAGGA
GGAGCCGCTGGAGCAGCTGGAGCAGTCCTAAGAGATACAGCAACACACCC
ACACAACCACAAAAACAGCAGAGCAAATGAGAAATACCTAGTAAACGGCC
ACGGTGGCGTATGCGTAATAATTACAGTAGAGCCACGCTAACTCACAAAA
GCCCTATAGCCAAACGATATGAAAAAATGAAGCTGCCACGACGAAAAGTA
ATCGAAAAGCCCACGAAAAACTTATATGTGCATACGTAGGGCATTTGTGA
GTTGGCGCGACTTGGCTTTAGTATTTTAATTAGGCAAAAACCAGGTTTTT
CACTACAAACACAAGCGTAACAGAAACCCCCCCACTAAGAGACAGAAGAT
CTGTGGCATTCTATCTCTTTCTCTCCTAGTAAAAGAAAACAAAGAAGAAG
AAAAAACACTATGCTTAATGATTATGGATCGATTTTCGATTTTTGTTGAA
AATTTGTTATGCTATTATATATATATATATTTTACAAGAAAACATAATAT
ACACACACTAAAAACATAAAAAAAAAAAAAAAAAA

LD09907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A.a 2520 Hex-A.a 1..2519 1..2519 12595 100 Plus
Hex-A-RB 2520 Hex-A-RB 1..2519 1..2519 12595 100 Plus
Hex-A-RA 2520 Hex-A-RA 1..2519 1..2519 12595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9477600..9480116 1..2517 12585 100 Plus
chr3R 27901430 chr3R 22273916..22274046 701..831 250 79.4 Plus
chr2R 21145070 chr2R 11107241..11107357 835..719 210 78.6 Minus
chr3R 27901430 chr3R 22274720..22274788 1414..1482 195 85.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9585885..9588403 1..2519 12595 100 Plus
3R 32079331 3R 26450890..26451020 701..831 250 79.4 Plus
2R 25286936 2R 15220031..15220147 835..719 210 78.6 Minus
3R 32079331 3R 26451694..26451762 1414..1482 195 85.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9593983..9596501 1..2519 12595 100 Plus
3R 31820162 3R 26191755..26191851 735..831 245 83.5 Plus
2R 25260384 2R 15221230..15221346 835..719 210 78.6 Minus
3R 31820162 3R 26192525..26192593 1414..1482 195 85.5 Plus
2R 25260384 2R 15220114..15220167 1927..1874 150 85.1 Minus
Blast to na_te.dros performed 2019-03-16 19:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2575 450..733 191 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2466..2654 480..670 176 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1286..1589 242..551 168 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2494 465..553 168 67.4 Plus

LD09907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:09:35 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9477909..9478063 310..464 100 == Plus
chrX 9477600..9477834 1..235 100 == Plus
chrX 9478154..9480116 555..2517 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:04 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 335..1960 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:13 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 335..1960 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:27 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 335..1960 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:06 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 335..1960 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:16 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 335..1960 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:13 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RB 1..2517 1..2517 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:12 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RB 1..2517 1..2517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:27 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..2512 6..2517 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:06 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RB 1..2517 1..2517 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:16 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RC 211..2727 1..2517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:35 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
X 9585885..9588401 1..2517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:35 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
X 9585885..9588401 1..2517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:35 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
X 9585885..9588401 1..2517 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:27 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9479918..9482434 1..2517 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:10 Download gff for LD09907.complete
Subject Subject Range Query Range Percent Splice Strand
X 9593983..9596499 1..2517 100   Plus

LD09907.hyp Sequence

Translation from 0 to 1959

> LD09907.hyp
EFNFVKNVPSVWTRAADENKTRRERESCVWTLKDSKLKPTRKGCTANAQV
EKPTRVCTSNTKIVNVFFLPCECKRIRSKKNSQSKKEPKKGRENQKRKKE
KKNKQENTNIIMDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQG
AALSATEKITTTTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAA
EKSKMVHELCQQLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVT
YVQDLPNGNERGKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHI
MIGSGTQLFDHIAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLL
ETWTKGFNCAGVVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCA
WKNHNCKIGLIVGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFG
DNGALDFVRTEFDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQ
AGILFNGQDSEVLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNA
TDGDCANVRYICECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRF
HPKFHNLMVEKISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNG
KK*

LD09907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-PA 541 CG3001-PA 1..541 112..652 2801 100 Plus
Hex-A-PC 448 CG3001-PC 1..448 205..652 2349 100 Plus
Hex-A-PB 448 CG3001-PB 1..448 205..652 2349 100 Plus
Hex-t2-PA 486 CG32849-PA 50..479 214..642 1283 56.5 Plus
Hex-C-PA 454 CG8094-PA 6..452 206..644 1243 54.4 Plus

LD09907.pep Sequence

Translation from 334 to 1959

> LD09907.pep
MDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQGAALSATEKITT
TTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAAEKSKMVHELCQ
QLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVTYVQDLPNGNER
GKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHIMIGSGTQLFDH
IAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLLETWTKGFNCAG
VVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCAWKNHNCKIGLI
VGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFGDNGALDFVRTE
FDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQAGILFNGQDSE
VLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNATDGDCANVRYI
CECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRFHPKFHNLMVEK
ISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNGKK*

LD09907.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22320-PA 539 GF22320-PA 1..539 1..541 2452 87.3 Plus
Dana\GF12622-PA 454 GF12622-PA 6..452 95..533 1271 55.7 Plus
Dana\GF20727-PA 447 GF20727-PA 13..435 102..523 1250 53.9 Plus
Dana\GF20735-PA 469 GF20735-PA 18..453 95..531 907 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18317-PA 539 GG18317-PA 1..539 1..541 2858 98.5 Plus
Dere\GG11478-PA 453 GG11478-PA 16..446 102..531 1300 55.5 Plus
Dere\GG22367-PA 454 GG22367-PA 6..452 95..533 1256 55.4 Plus
Dere\GG11476-PA 465 GG11476-PA 14..449 95..531 912 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12375-PA 538 GH12375-PA 6..538 4..540 2357 84.3 Plus
Dgri\GH19419-PA 449 GH19419-PA 12..447 97..531 1316 55 Plus
Dgri\GH21465-PA 454 GH21465-PA 6..452 95..533 1268 54.6 Plus
Dgri\GH19418-PA 459 GH19418-PA 14..448 96..531 945 38.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-PA 541 CG3001-PA 1..541 1..541 2801 100 Plus
Hex-A-PC 448 CG3001-PC 1..448 94..541 2349 100 Plus
Hex-A-PB 448 CG3001-PB 1..448 94..541 2349 100 Plus
Hex-t2-PA 486 CG32849-PA 50..479 103..531 1283 56.5 Plus
Hex-C-PA 454 CG8094-PA 6..452 95..533 1243 54.4 Plus
Hex-t1-PA 465 CG33102-PA 14..449 95..531 870 36.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14754-PA 547 GI14754-PA 1..547 1..540 2413 85.6 Plus
Dmoj\GI22624-PA 451 GI22624-PA 12..451 96..534 1305 53 Plus
Dmoj\GI19942-PA 454 GI19942-PA 6..452 95..533 1267 55.3 Plus
Dmoj\GI22621-PA 454 GI22621-PA 15..448 97..531 933 39.5 Plus
Dmoj\GI22622-PA 458 GI22622-PA 15..454 97..537 930 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21847-PA 456 GL21847-PA 19..454 102..536 1365 56.7 Plus
Dper\GL11018-PA 454 GL11018-PA 6..452 95..533 1298 54.6 Plus
Dper\GL15877-PA 397 GL15877-PA 222..397 366..541 894 94.9 Plus
Dper\GL21996-PA 466 GL21996-PA 15..450 95..531 866 35.7 Plus
Dper\GL15877-PA 397 GL15877-PA 1..227 1..219 732 69.2 Plus
Dper\GL21460-PA 66 GL21460-PA 1..64 473..536 201 51.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15574-PA 549 GA15574-PA 1..549 1..541 2379 84.3 Plus
Dpse\GA26424-PA 456 GA26424-PA 19..454 102..536 1364 56.7 Plus
Dpse\GA20820-PA 454 GA20820-PA 6..452 95..533 1298 54.6 Plus
Dpse\GA17282-PA 466 GA17282-PA 15..450 95..531 860 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11376-PA 388 GM11376-PA 1..376 1..373 1485 85.7 Plus
Dsec\GM10321-PA 453 GM10321-PA 16..448 102..533 1319 55.4 Plus
Dsec\GM20151-PA 454 GM20151-PA 6..452 95..533 1235 53.9 Plus
Dsec\GM10320-PA 465 GM10320-PA 14..449 95..531 894 36.4 Plus
Dsec\GM11377-PA 155 GM11377-PA 1..155 387..541 827 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hex-t2-PA 453 GD21282-PA 16..448 102..533 1325 55.9 Plus
Dsim\GD25630-PA 454 GD25630-PA 6..452 95..533 1245 54.4 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 14..236 95..317 486 38.6 Plus
Dsim\GD24777-PA 69 GD24777-PA 1..69 473..541 368 100 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 228..384 375..531 243 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19157-PA 561 GJ19157-PA 1..561 1..540 2358 82.8 Plus
Dvir\GJ23870-PA 450 GJ23870-PA 6..450 90..533 1278 52.8 Plus
Dvir\GJ15111-PA 454 GJ15111-PA 6..452 95..533 1271 54.7 Plus
Dvir\GJ23866-PA 451 GJ23866-PA 12..447 96..530 1178 46.8 Plus
Dvir\GJ23869-PA 458 GJ23869-PA 14..447 97..531 955 38.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16160-PA 535 GK16160-PA 1..535 1..540 2396 84.1 Plus
Dwil\GK19144-PA 471 GK19144-PA 2..455 66..523 1319 52.5 Plus
Dwil\GK18967-PA 460 GK18967-PA 12..439 97..523 1308 54.7 Plus
Dwil\GK21542-PA 454 GK21542-PA 6..452 95..533 1292 55.7 Plus
Dwil\GK13969-PA 468 GK13969-PA 14..448 95..528 930 38.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hex-A-PA 546 GE17799-PA 1..546 1..541 2880 98.7 Plus
Dyak\Hex-t2-PA 453 GE23669-PA 16..446 102..531 1298 54.5 Plus
Dyak\Hex-C-PA 454 GE12255-PA 6..452 95..533 1263 55.4 Plus
Dyak\Hex-t1-PA 465 GE23668-PA 14..449 95..531 915 37.3 Plus