Clone LD09927 Report

Search the DGRC for LD09927

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:99
Well:27
Vector:pBS SK-
Associated Gene/Transcriptcav-RA
Protein status:LD09927.pep: gold
Preliminary Size:1752
Sequenced Size:1548

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6219 2001-01-01 Release 2 assignment
CG6219 2001-10-10 Blastp of sequenced clone
CG6219 2003-01-01 Sim4 clustering to Release 3
cav 2008-04-29 Release 5.5 accounting
cav 2008-08-15 Release 5.9 accounting
cav 2008-12-18 5.12 accounting

Clone Sequence Records

LD09927.complete Sequence

1548 bp (1548 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061114

> LD09927.complete
AGTTGCCACTCGGTTTTATCAGCGGACGGTATCACGGCAAGATTTGTCCA
AAATGCGTGCTTATTCGTCCAACTGAAGTCCGGCCTAGTGTTCTGATAAA
GTGTGAGACAACGTTTGTTTGTAAAAAGAACTACTCAAATGGGATTTCAG
TCAAAACAAAACAAGAGCACATCACACACAAGACGCACACATACACACAA
GACGCACACGCACACAGATGGTCAAAGAGGTGCAGGGCTGAAAATAAAAA
CACGTAGATATTTCGTACTGTTTGCTTTACTAGCCACTTTTTTCGGTCAA
TGCTTTTTGCTGAGGACTCGGCTTTCGACGCGATATATTTTATGTAGTTT
AGATCTCTGGATGGACGATTTATTTGTGAATTTATGCTGCTGCTACTATG
TGTTAATATGTCGGGGACGCAAATGTCTGCCTTCCTGAGAAAGTATCTAG
CCGACGAGGACAAAAAAATTCGTGCGCAATTCAAAGAAAGCGATCCTAAC
AACAAATTGATTCTATGGATGCACGAAAAAACGAGAATAACCGAGGAGGA
CTTGGCACGCCCATACACCGAGGACGAGGTAAAGGAGCTTTGTCTACGCA
CCAAAGTGAAGGTTGATATGACCGCTTGGAATTGTCTGTGGGAAGCCAAA
AAGAGGTTTGAAGCAAAAGGACGTTTTGTGAACAAGTCTGAGAGATTCAT
CAACCGAATGTATATGAAAGCGGTGCGCAGAAAGATGGTCCAACCGTATC
CGGAGGAGTTTGTGGCCCAGCGAAGAGAAATAGTTGCAGCCGAGACTAAG
AAGCAGAACATCAGCCGATTGGATAGATGGCAAAAGAAAAAGAGTCAAAA
CCTATCAGCACCAGAATCCTCTCCAGACGCTCATGCATCTTCTAATGACG
CGGTGCAGAGCCACGAGGACCAAGCAAACACAAATCTTAGTTCACTGTCT
CAAATGAACTTTCAAGTGGAAGCGATGGCTCCGCCAGGCGTGTCGTCATC
TGATCTTAGCGGCATCGGAGACGATGAGGACGAACAGCAGCAGTCAGGAT
TTCAGGATGAGAACATCAACCGTCCAGAGACAGAGATTAATGAGAATTCG
GTGAGATGTGATCCAATTAATTTAGGAAGGATGCGGACTGGATGTATAAA
TTCGCAAGCAAATAACAGTTTCCGGAATACGGAGTCTGATCCGGACTACT
ATATGTTTGGCACCCAATTGAGCACATTAGTACGACCCACGTCGACTCAA
GAGCCTGACGATCAGGTAAACTGTCCAGAGACAGAGATGAATGAGAGCTG
GGTAAGGTGTGATCAAATTAATTCGGAAAGCTTGTCGATTGGACCGTCAA
TTGATTCGGAAGGAACTATCACTTTTCAAAATACAGAATCTGAGCCGATC
GACGTCACCTCAATAGCCTGATGTCCATATATTAAACTATATAAAGTTCT
TCATTTATTGGTGTTAATTAATTAAAAACATGTAATCCCTAAAAATGTTA
TAAAATGTATAATAAAAATCTTAATTAAAAAAAAAAAAAAAAAAAAAA

LD09927.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1530 cav-RA 1..1530 1..1530 7650 100 Plus
cav-RD 1590 cav-RD 464..1590 400..1526 5635 100 Plus
cav-RE 1737 cav-RE 613..1737 402..1526 5625 100 Plus
cav-RE 1737 cav-RE 384..614 1..231 1155 100 Plus
cav-RD 1590 cav-RD 364..467 1..104 520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20045879..20046872 533..1526 4970 100 Plus
chr3R 27901430 chr3R 20044869..20045271 1..403 2015 100 Plus
chr3R 27901430 chr3R 20045687..20045818 402..533 660 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223532 533..1530 4990 100 Plus
3R 32079331 3R 24221525..24221927 1..403 2015 100 Plus
3R 32079331 3R 24222343..24222474 402..533 660 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23963366..23964363 533..1530 4990 100 Plus
3R 31820162 3R 23962356..23962758 1..403 2015 100 Plus
3R 31820162 3R 23963174..23963305 402..533 660 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:15:23 has no hits.

LD09927.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:59 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20045687..20045818 402..533 100 -> Plus
chr3R 20045880..20046830 534..1484 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:08 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 384..1421 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:08 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 384..1421 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:13:09 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 384..1421 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:54 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 384..1421 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:12 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1038 384..1421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:51 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1526 1..1526 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:08 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1526 1..1526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:13:09 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1520 7..1526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:54 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1526 1..1526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:12 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
cav-RA 1..1520 7..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:59 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24221525..24221925 1..401 100 -> Plus
3R 24222343..24222474 402..533 100 -> Plus
3R 24222536..24223528 534..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:59 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24221525..24221925 1..401 100 -> Plus
3R 24222343..24222474 402..533 100 -> Plus
3R 24222536..24223528 534..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:59 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24221525..24221925 1..401 100 -> Plus
3R 24222343..24222474 402..533 100 -> Plus
3R 24222536..24223528 534..1526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:13:09 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047247..20047647 1..401 100 -> Plus
arm_3R 20048065..20048196 402..533 100 -> Plus
arm_3R 20048258..20049250 534..1526 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:45 Download gff for LD09927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23962356..23962756 1..401 100 -> Plus
3R 23963174..23963305 402..533 100 -> Plus
3R 23963367..23964359 534..1526 100   Plus

LD09927.hyp Sequence

Translation from 383 to 1420

> LD09927.hyp
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*

LD09927.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
cav-PA 345 CG6219-PA 1..345 1..345 1797 100 Plus
cav-PE 343 CG6219-PE 5..343 7..345 1767 100 Plus
cav-PB 337 CG6219-PB 1..337 9..345 1757 100 Plus
cav-PD 337 CG6219-PD 1..337 9..345 1757 100 Plus

LD09927.pep Sequence

Translation from 383 to 1420

> LD09927.pep
MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT
RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN
KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ
KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP
PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM
RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET
EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*

LD09927.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16116-PA 313 GF16116-PA 29..311 44..291 347 34.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11268-PA 328 GG11268-PA 1..328 9..345 1227 73.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18668-PA 216 GH18668-PA 1..78 79..156 207 48.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
cav-PA 345 CG6219-PA 1..345 1..345 1797 100 Plus
cav-PE 343 CG6219-PE 5..343 7..345 1767 100 Plus
cav-PB 337 CG6219-PB 1..337 9..345 1757 100 Plus
cav-PD 337 CG6219-PD 1..337 9..345 1757 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24179-PA 301 GI24179-PA 5..147 14..155 324 45.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23417-PA 282 GL23417-PA 1..279 9..290 358 35.4 Plus
Dper\GL14051-PA 186 GL14051-PA 1..159 9..168 264 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27250-PA 283 GA27250-PA 1..280 9..290 361 36.3 Plus
Dpse\GA26940-PA 186 GA26940-PA 1..159 9..168 275 37.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26573-PA 336 GM26573-PA 1..336 9..345 1605 88.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\cav-PA 336 GD21077-PA 1..336 9..345 1597 88.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14215-PA 301 GJ14215-PA 1..295 9..291 363 34.7 Plus
Dvir\GJ17001-PA 390 GJ17001-PA 9..176 14..177 213 34.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24325-PA 255 GK24325-PA 9..248 17..290 331 35.7 Plus
Dwil\GK11387-PA 271 GK11387-PA 26..213 36..235 329 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\anon-EST:fe1G5-PA 319 GE23460-PA 1..316 9..341 1163 67.4 Plus