BDGP Sequence Production Resources |
Search the DGRC for LD09927
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 99 |
Well: | 27 |
Vector: | pBS SK- |
Associated Gene/Transcript | cav-RA |
Protein status: | LD09927.pep: gold |
Preliminary Size: | 1752 |
Sequenced Size: | 1548 |
Gene | Date | Evidence |
---|---|---|
CG6219 | 2001-01-01 | Release 2 assignment |
CG6219 | 2001-10-10 | Blastp of sequenced clone |
CG6219 | 2003-01-01 | Sim4 clustering to Release 3 |
cav | 2008-04-29 | Release 5.5 accounting |
cav | 2008-08-15 | Release 5.9 accounting |
cav | 2008-12-18 | 5.12 accounting |
1548 bp (1548 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061114
> LD09927.complete AGTTGCCACTCGGTTTTATCAGCGGACGGTATCACGGCAAGATTTGTCCA AAATGCGTGCTTATTCGTCCAACTGAAGTCCGGCCTAGTGTTCTGATAAA GTGTGAGACAACGTTTGTTTGTAAAAAGAACTACTCAAATGGGATTTCAG TCAAAACAAAACAAGAGCACATCACACACAAGACGCACACATACACACAA GACGCACACGCACACAGATGGTCAAAGAGGTGCAGGGCTGAAAATAAAAA CACGTAGATATTTCGTACTGTTTGCTTTACTAGCCACTTTTTTCGGTCAA TGCTTTTTGCTGAGGACTCGGCTTTCGACGCGATATATTTTATGTAGTTT AGATCTCTGGATGGACGATTTATTTGTGAATTTATGCTGCTGCTACTATG TGTTAATATGTCGGGGACGCAAATGTCTGCCTTCCTGAGAAAGTATCTAG CCGACGAGGACAAAAAAATTCGTGCGCAATTCAAAGAAAGCGATCCTAAC AACAAATTGATTCTATGGATGCACGAAAAAACGAGAATAACCGAGGAGGA CTTGGCACGCCCATACACCGAGGACGAGGTAAAGGAGCTTTGTCTACGCA CCAAAGTGAAGGTTGATATGACCGCTTGGAATTGTCTGTGGGAAGCCAAA AAGAGGTTTGAAGCAAAAGGACGTTTTGTGAACAAGTCTGAGAGATTCAT CAACCGAATGTATATGAAAGCGGTGCGCAGAAAGATGGTCCAACCGTATC CGGAGGAGTTTGTGGCCCAGCGAAGAGAAATAGTTGCAGCCGAGACTAAG AAGCAGAACATCAGCCGATTGGATAGATGGCAAAAGAAAAAGAGTCAAAA CCTATCAGCACCAGAATCCTCTCCAGACGCTCATGCATCTTCTAATGACG CGGTGCAGAGCCACGAGGACCAAGCAAACACAAATCTTAGTTCACTGTCT CAAATGAACTTTCAAGTGGAAGCGATGGCTCCGCCAGGCGTGTCGTCATC TGATCTTAGCGGCATCGGAGACGATGAGGACGAACAGCAGCAGTCAGGAT TTCAGGATGAGAACATCAACCGTCCAGAGACAGAGATTAATGAGAATTCG GTGAGATGTGATCCAATTAATTTAGGAAGGATGCGGACTGGATGTATAAA TTCGCAAGCAAATAACAGTTTCCGGAATACGGAGTCTGATCCGGACTACT ATATGTTTGGCACCCAATTGAGCACATTAGTACGACCCACGTCGACTCAA GAGCCTGACGATCAGGTAAACTGTCCAGAGACAGAGATGAATGAGAGCTG GGTAAGGTGTGATCAAATTAATTCGGAAAGCTTGTCGATTGGACCGTCAA TTGATTCGGAAGGAACTATCACTTTTCAAAATACAGAATCTGAGCCGATC GACGTCACCTCAATAGCCTGATGTCCATATATTAAACTATATAAAGTTCT TCATTTATTGGTGTTAATTAATTAAAAACATGTAATCCCTAAAAATGTTA TAAAATGTATAATAAAAATCTTAATTAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cav-RA | 1530 | cav-RA | 1..1530 | 1..1530 | 7650 | 100 | Plus |
cav-RD | 1590 | cav-RD | 464..1590 | 400..1526 | 5635 | 100 | Plus |
cav-RE | 1737 | cav-RE | 613..1737 | 402..1526 | 5625 | 100 | Plus |
cav-RE | 1737 | cav-RE | 384..614 | 1..231 | 1155 | 100 | Plus |
cav-RD | 1590 | cav-RD | 364..467 | 1..104 | 520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20045879..20046872 | 533..1526 | 4970 | 100 | Plus |
chr3R | 27901430 | chr3R | 20044869..20045271 | 1..403 | 2015 | 100 | Plus |
chr3R | 27901430 | chr3R | 20045687..20045818 | 402..533 | 660 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24222535..24223532 | 533..1530 | 4990 | 100 | Plus |
3R | 32079331 | 3R | 24221525..24221927 | 1..403 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 402..533 | 660 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23963366..23964363 | 533..1530 | 4990 | 100 | Plus |
3R | 31820162 | 3R | 23962356..23962758 | 1..403 | 2015 | 100 | Plus |
3R | 31820162 | 3R | 23963174..23963305 | 402..533 | 660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20045687..20045818 | 402..533 | 100 | -> | Plus |
chr3R | 20045880..20046830 | 534..1484 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1038 | 384..1421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1038 | 384..1421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1038 | 384..1421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1038 | 384..1421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1038 | 384..1421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1526 | 1..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1526 | 1..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1520 | 7..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1526 | 1..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RA | 1..1520 | 7..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221525..24221925 | 1..401 | 100 | -> | Plus |
3R | 24222343..24222474 | 402..533 | 100 | -> | Plus |
3R | 24222536..24223528 | 534..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221525..24221925 | 1..401 | 100 | -> | Plus |
3R | 24222343..24222474 | 402..533 | 100 | -> | Plus |
3R | 24222536..24223528 | 534..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221525..24221925 | 1..401 | 100 | -> | Plus |
3R | 24222343..24222474 | 402..533 | 100 | -> | Plus |
3R | 24222536..24223528 | 534..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20047247..20047647 | 1..401 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 402..533 | 100 | -> | Plus |
arm_3R | 20048258..20049250 | 534..1526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23962356..23962756 | 1..401 | 100 | -> | Plus |
3R | 23963174..23963305 | 402..533 | 100 | -> | Plus |
3R | 23963367..23964359 | 534..1526 | 100 | Plus |
Translation from 383 to 1420
> LD09927.hyp MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cav-PA | 345 | CG6219-PA | 1..345 | 1..345 | 1797 | 100 | Plus |
cav-PE | 343 | CG6219-PE | 5..343 | 7..345 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 9..345 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 9..345 | 1757 | 100 | Plus |
Translation from 383 to 1420
> LD09927.pep MLLLLCVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKT RITEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVN KSERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQ KKKSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAP PGVSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRM RTGCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPET EMNESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16116-PA | 313 | GF16116-PA | 29..311 | 44..291 | 347 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11268-PA | 328 | GG11268-PA | 1..328 | 9..345 | 1227 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18668-PA | 216 | GH18668-PA | 1..78 | 79..156 | 207 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cav-PA | 345 | CG6219-PA | 1..345 | 1..345 | 1797 | 100 | Plus |
cav-PE | 343 | CG6219-PE | 5..343 | 7..345 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 9..345 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 9..345 | 1757 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24179-PA | 301 | GI24179-PA | 5..147 | 14..155 | 324 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23417-PA | 282 | GL23417-PA | 1..279 | 9..290 | 358 | 35.4 | Plus |
Dper\GL14051-PA | 186 | GL14051-PA | 1..159 | 9..168 | 264 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27250-PA | 283 | GA27250-PA | 1..280 | 9..290 | 361 | 36.3 | Plus |
Dpse\GA26940-PA | 186 | GA26940-PA | 1..159 | 9..168 | 275 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26573-PA | 336 | GM26573-PA | 1..336 | 9..345 | 1605 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\cav-PA | 336 | GD21077-PA | 1..336 | 9..345 | 1597 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14215-PA | 301 | GJ14215-PA | 1..295 | 9..291 | 363 | 34.7 | Plus |
Dvir\GJ17001-PA | 390 | GJ17001-PA | 9..176 | 14..177 | 213 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24325-PA | 255 | GK24325-PA | 9..248 | 17..290 | 331 | 35.7 | Plus |
Dwil\GK11387-PA | 271 | GK11387-PA | 26..213 | 36..235 | 329 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\anon-EST:fe1G5-PA | 319 | GE23460-PA | 1..316 | 9..341 | 1163 | 67.4 | Plus |