Clone LD09950 Report

Search the DGRC for LD09950

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:99
Well:50
Vector:pBS SK-
Associated Gene/TranscriptMo25-RA
Protein status:LD09950.pep: gold
Preliminary Size:2109
Sequenced Size:1894

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4083 2001-01-01 Release 2 assignment
CG4083 2002-06-13 Blastp of sequenced clone
CG4083 2003-01-01 Sim4 clustering to Release 3
Mo25 2008-04-29 Release 5.5 accounting
Mo25 2008-08-15 Release 5.9 accounting
Mo25 2008-12-18 5.12 accounting

Clone Sequence Records

LD09950.complete Sequence

1894 bp (1894 high quality bases) assembled on 2002-06-13

GenBank Submission: AY128438

> LD09950.complete
CCTGGAAGAAGACAAGAAAAAAATAATATATAATAATAGAATATTCCACC
GTGATAATATTGCCAAGCATTGTTTTCCGCGTCTTTGCCGTCGGTAATTG
GGCAACAGTCAGAACGACCAAAAAGCCGAAGGGCCCCGAACAGCAGGATA
ATCGGCAGAAAGTACGAGGCATCATCGACAGGCCAACTAAACCACAACGA
CAACCACATCCGCAGTCAAATCCCAATCCAAATCCACGTCCAAATCCCAT
TTCGAGTGAAACAGCGAGTGAGACAGCGAAATGCCACTGTTCGGGAAGTC
ACAGAAGTCGCCAGTGGAGCTGGTCAAGTCGCTGAAGGAGGCGATCAACG
CCCTGGAGGCGGGCGACCGCAAGGTGGAGAAGGCGCAGGAGGACGTCAGC
AAGAACCTGGTCTCGATCAAGAACATGCTGTACGGTAGCAGCGATGCCGA
GCCGCCGGCGGACTACGTGGTGGCCCAGCTGTCCCAGGAGCTGTACAACA
GCAACCTGCTGCTGCTGCTCATCCAGAACCTGCACCGCATCGATTTCGAG
GGCAAGAAGCATGTGGCGCTCATTTTCAATAATGTGCTGCGCCGCCAGAT
TGGCACCCGTTCGCCCACCGTCGAGTATATATGCACGAAGCCGGAGATCC
TGTTCACCCTGATGGCCGGCTACGAAGATGCGCATCCGGAGATCGCACTG
AACTCCGGTACCATGCTGAGGGAGTGCGCCCGGTACGAGGCGCTGGCCAA
GATCATGCTGCACTCGGATGAGTTCTTCAAGTTCTTCCGCTACGTGGAGG
TTTCCACCTTTGACATTGCCAGCGATGCCTTTTCTACGTTCAAGGAGCTG
CTCACGCGCCATAAGCTGCTGTGCGCGGAGTTTCTGGACGCCAACTACGA
CAAGTTCTTCTCGCAGCACTACCAGCGCCTGCTCAACTCGGAGAACTATG
TGACGCGGCGTCAGAGCTTGAAGCTGCTTGGGGAACTGCTGCTGGACCGG
CACAATTTCACCGTGATGACGCGCTACATATCCGAGCCGGAGAACCTCAA
GCTAATGATGAACATGCTCAAGGAAAAGTCGCGCAACATTCAGTTCGAGG
CGTTTCACGTCTTCAAGGTGTTCGTGGCCAATCCCAACAAGCCGAAGCCC
ATTCTGGACATCCTGCTGCGCAACCAGACGAAGCTGGTCGACTTTCTGAC
CAACTTCCATACGGATCGCTCCGAGGACGAGCAGTTCAACGACGAGAAGG
CCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAG
TTGGACCTCCACCTCGGCTCCAACTTCAGCTCCAACTCCAGCTCCAGCGT
CCCGGGGGCAAAAGGACCGTAGCCAGAAGCCAGAAGCGATCGATACGGAA
GCAGAGAGAGCGATGGTGGGTTAGCAGGATGTGAACATGTTTTGTGTGTG
GGTTAAAGCAAATATATATTATATACTATATTTTGTGACGCTGATGACTC
TACACTTGTGAGTAACTAAACAATAATTTAGACAACAACAAAAACAACAC
TGATGATGATAATGATAAAAATAACGATAAAGCGAATTAGAAAACAAGAA
AAAGTACGAGTAAATAGCGTAACGCCGAAAAATAAAACTGTACCGAGAGT
TTCGAATTTAACATAGCCACATTTAGACATTCTGGGCCTAGAGATCCGCT
ATCCTATTATACAGATATGTTTAACCATTCGTCGATCCTCCGCGAAGTAA
TCCCCCTTCCTTTCCAGACCCTTTTTTTCGATATCCATTTAACTAGTTGT
TGTATTTAAAATTTGATCGTTTTTGAAACGAGATATCCCTTCACCGCCTT
GACCTGCCACGCCCCTTTTGCGCCCCAAAAAAAAAAAAAAAAAA

LD09950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mo25-RA 2255 Mo25-RA 24..1911 1..1888 9440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16603316..16605191 1876..1 9350 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16613562..16615449 1888..1 9440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16606662..16608549 1888..1 9440 100 Minus
Blast to na_te.dros performed 2019-03-16 01:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1116..1185 1522..1597 114 65.8 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 887..958 1532..1602 114 63.9 Plus

LD09950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16603316..16603611 1581..1876 100 == Minus
chr3L 16603674..16605191 1..1518 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:13 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 1..1020 281..1300 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:20:30 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 1..1020 281..1300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:30 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 1..1020 281..1300 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 1..1020 281..1300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:42:40 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 1..1020 281..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:20 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 24..1899 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:20:30 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 24..1899 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:30 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 24..1899 1..1876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 24..1899 1..1876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:42:40 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
Mo25-RA 24..1899 1..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16613574..16615449 1..1876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16613574..16615449 1..1876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:28 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16613574..16615449 1..1876 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:30 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16606674..16608549 1..1876 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:57 Download gff for LD09950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16606674..16608549 1..1876 100   Minus

LD09950.hyp Sequence

Translation from 280 to 1299

> LD09950.hyp
MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNML
YGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFN
NVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECA
RYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAE
FLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYI
SEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQT
KLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEA*

LD09950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mo25-PB 339 CG4083-PB 1..339 1..339 1728 100 Plus
Mo25-PA 339 CG4083-PA 1..339 1..339 1728 100 Plus

LD09950.pep Sequence

Translation from 280 to 1299

> LD09950.pep
MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNML
YGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFN
NVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECA
RYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAE
FLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYI
SEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQT
KLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEA*

LD09950.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10513-PA 339 GF10513-PA 1..339 1..339 1761 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15862-PA 339 GG15862-PA 1..339 1..339 1788 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16454-PA 339 GH16454-PA 1..339 1..339 1765 97.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mo25-PB 339 CG4083-PB 1..339 1..339 1728 100 Plus
Mo25-PA 339 CG4083-PA 1..339 1..339 1728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16711-PA 339 GI16711-PA 1..339 1..339 1770 97.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12722-PA 339 GL12722-PA 1..339 1..339 1765 98.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17944-PA 339 GA17944-PA 1..339 1..339 1774 98.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24380-PA 323 GM24380-PA 1..323 1..339 1470 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12453-PA 339 GD12453-PA 1..339 1..339 1793 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12454-PA 339 GJ12454-PA 1..339 1..339 1770 97.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17738-PA 339 GK17738-PA 1..339 1..339 1775 98.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22202-PA 339 GE22202-PA 1..339 1..339 1793 100 Plus