BDGP Sequence Production Resources |
Search the DGRC for LD10005
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 100 |
Well: | 5 |
Vector: | pBS SK- |
Associated Gene/Transcript | tan-RA |
Protein status: | LD10005.pep: gold |
Preliminary Size: | 1598 |
Sequenced Size: | 1480 |
Gene | Date | Evidence |
---|---|---|
CG6586 | 2001-01-01 | Release 2 assignment |
CG6586 | 2001-11-09 | Blastp of sequenced clone |
CG6586 | 2003-01-01 | Sim4 clustering to Release 3 |
tan | 2008-04-29 | Release 5.5 accounting |
tan | 2008-08-15 | Release 5.9 accounting |
tan | 2008-12-18 | 5.12 accounting |
1480 bp (1480 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069394
> LD10005.complete TACAAAAAGAACACAAAAGTTATAATTCTGTCATTTAATTGTCTGCAAAA TAGGACTTTCCAGCATCATTGCATGTAGTTAAATCCAGATTTCTGAAAAA CCTTATTTGGCAGCGATATGTTTAGCCAAAAAATAGGAATTTGCGGATAA ATTACCCCCCGGAGTGACAAAGATCTGTATTGTCATACAGACGCCTGCAG AAAAAAGGGTTTTACAAGAAGAAAATGCGCTATTTTGCAAAGGAATGATT TCTAGAATTCAACGTCAAATATAATGGATAACATAGTCTACGACTTTGCC AAGATCACGTTTCAAGCAAAAGACAACAGGTCACCCACTACTAACTCGAA TCTGTCGTGGCAACTAAATCAGATGGCCTTGTCGGACATGGAGGAGATGC AGGACACATCCGAGCCCATAGCTCCACCCGAATCCGATGACAATGTCAGC AGTGAATCGCATGACTCCGACGATGTAGACTCGCAATTGAGTCGCTGCGA GGACAACGATGACGACAGCGATTGCATCAGTGGATCCTCCAGACGCAGTT CCACTTTTGGAGCTCGAGCGGGCGTGGCTCGTCGCAGAATGCCCGCCAGG GTGTCCAAGGACAACTTTAACCGGATCTGCAGCGCCATCATGAAACCCAT CAAAAAGAAGCAACGCAAAGAACTGAACACAAATGCCCAAACACTTAAAA GCATCGAAAAGATCTACACCAGCAGGCGCATGAAAAAGTTCACGCCCACC AATCTGGAGACAATCTTCGAGGAACCCAGCGATGAGAATGCCGCCGATGC AGAGGACGACAGCGAAGAGTGCTCCATCAGCAGCCAAGTGAAAGTAGTTA AGGTGTGGGGTCGCAAACTCCGCCGGGCAATATCCTTCAGCGATGGCCTG AACAAGAACAAAATCCTGTCGAAGAGACGCCGCCAGAAGGTGAAGAAGAC CTTTGGCAAGCGTTTCGCACTCAAGAAAATCTCCATGACCGAGTTCCACG ATCGTCTGAATAAGAGCTTCGACAGTGCCATGCTGGAGGGGGATGATGCA GAGGCGGGAGGATCGGCGGAGGCCGTCAACATCCCCAAGACATCCATGAC CATGGAAGACATACAGCTGCCGACAATGAGCAGCCAGCACCAGTTCCTCA TGCAACCGGCGGGCTTTGAGTAGAGAGACTGAATGATCCATCAAATACGC CCCACATTGATTTGCATTGCATTAAAACTAGCTAATAGTGCCCAAAAATA AATGTACTGATTACCAATTATGAAGTTAGGATTTACGTTCGTTTGGTTAA CTTCTCACCTTAGTCTTAAGCCCCATAAAAGTTATAAATGAGTGTAAATA GCATGTAGAAGAAAAGAAAATAAGAGCTATACCTAGAGCTAAACTTATCC AGCCATAGAATACGATTCTGTGCTTAGCCATTAAGATAATAAATAAAAGT TGAAAATAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tan-RA | 1671 | tan-RA | 54..1511 | 1..1458 | 7290 | 100 | Plus |
tan.b | 1446 | tan.b | 245..1446 | 254..1455 | 6010 | 100 | Plus |
tan.a | 1416 | tan.a | 331..1416 | 370..1455 | 5430 | 100 | Plus |
tan.a | 1416 | tan.a | 5..333 | 1..329 | 1645 | 100 | Plus |
tan.b | 1446 | tan.b | 5..246 | 1..242 | 1210 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6048348..6049478 | 327..1457 | 5550 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 6047812..6048054 | 1..243 | 1170 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 6048209..6048299 | 241..331 | 455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6047812..6048053 | 1..242 | 98 | -> | Plus |
chr3L | 6048211..6048297 | 243..329 | 100 | -> | Plus |
chr3L | 6048351..6049478 | 330..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..900 | 274..1173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..900 | 274..1173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..900 | 274..1173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..900 | 274..1173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..900 | 274..1173 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..1455 | 1..1455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..1455 | 1..1455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RB | 43..1499 | 1..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RA | 1..1455 | 1..1455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tan-RB | 43..1499 | 1..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6055178..6055419 | 1..242 | 100 | -> | Plus |
3L | 6055577..6055663 | 243..329 | 100 | -> | Plus |
3L | 6055717..6056844 | 330..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6055178..6055419 | 1..242 | 100 | -> | Plus |
3L | 6055577..6055663 | 243..329 | 100 | -> | Plus |
3L | 6055717..6056844 | 330..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6055178..6055419 | 1..242 | 100 | -> | Plus |
3L | 6055577..6055663 | 243..329 | 100 | -> | Plus |
3L | 6055717..6056844 | 330..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6048278..6048519 | 1..242 | 100 | -> | Plus |
arm_3L | 6048677..6048763 | 243..329 | 100 | -> | Plus |
arm_3L | 6048817..6049944 | 330..1457 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6048278..6048519 | 1..242 | 100 | -> | Plus |
3L | 6048677..6048763 | 243..329 | 100 | -> | Plus |
3L | 6048817..6049944 | 330..1457 | 100 | Plus |
Translation from 273 to 1172
> LD10005.hyp MDNIVYDFAKITFQAKDNRSPTTNSNLSWQLNQMALSDMEEMQDTSEPIA PPESDDNVSSESHDSDDVDSQLSRCEDNDDDSDCISGSSRRSSTFGARAG VARRRMPARVSKDNFNRICSAIMKPIKKKQRKELNTNAQTLKSIEKIYTS RRMKKFTPTNLETIFEEPSDENAADAEDDSEECSISSQVKVVKVWGRKLR RAISFSDGLNKNKILSKRRRQKVKKTFGKRFALKKISMTEFHDRLNKSFD SAMLEGDDAEAGGSAEAVNIPKTSMTMEDIQLPTMSSQHQFLMQPAGFE*
Translation from 273 to 1172
> LD10005.pep MDNIVYDFAKITFQAKDNRSPTTNSNLSWQLNQMALSDMEEMQDTSEPIA PPESDDNVSSESHDSDDVDSQLSRCEDNDDDSDCISGSSRRSSTFGARAG VARRRMPARVSKDNFNRICSAIMKPIKKKQRKELNTNAQTLKSIEKIYTS RRMKKFTPTNLETIFEEPSDENAADAEDDSEECSISSQVKVVKVWGRKLR RAISFSDGLNKNKILSKRRRQKVKKTFGKRFALKKISMTEFHDRLNKSFD SAMLEGDDAEAGGSAEAVNIPKTSMTMEDIQLPTMSSQHQFLMQPAGFE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10670-PA | 307 | GF10670-PA | 1..307 | 1..299 | 1105 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15310-PA | 298 | GG15310-PA | 1..298 | 1..299 | 1460 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15029-PA | 302 | GH15029-PA | 1..302 | 1..299 | 698 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tant-PB | 299 | CG6586-PB | 1..299 | 1..299 | 1525 | 100 | Plus |
tant-PA | 299 | CG6586-PA | 1..299 | 1..299 | 1525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16682-PA | 231 | GI16682-PA | 3..223 | 56..282 | 666 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10545-PA | 291 | GL10545-PA | 1..277 | 1..289 | 947 | 69.9 | Plus |
Dper\GL15541-PA | 218 | GL15541-PA | 1..193 | 36..243 | 747 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19704-PA | 295 | GA19704-PA | 1..281 | 1..289 | 934 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14744-PA | 177 | GM14744-PA | 1..177 | 123..299 | 908 | 96 | Plus |
Dsec\GM14743-PA | 107 | GM14743-PA | 1..106 | 1..107 | 512 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13925-PA | 298 | GD13925-PA | 1..298 | 1..299 | 1513 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12933-PA | 298 | GJ12933-PA | 1..290 | 1..282 | 693 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16901-PA | 285 | GK16901-PA | 40..276 | 55..286 | 651 | 64.3 | Plus |
Dwil\GK16900-PA | 466 | GK16900-PA | 40..245 | 55..254 | 640 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21531-PA | 298 | GE21531-PA | 1..298 | 1..299 | 1422 | 92.3 | Plus |