Clone LD10028 Report

Search the DGRC for LD10028

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:100
Well:28
Vector:pBS SK-
Associated Gene/TranscriptmRpL44-RA
Protein status:LD10028.pep: gold
Preliminary Size:1350
Sequenced Size:1127

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2109 2001-01-01 Release 2 assignment
CG2109 2003-01-01 Sim4 clustering to Release 3
CG2109 2003-01-14 Blastp of sequenced clone
mRpL44 2008-04-29 Release 5.5 accounting
mRpL44 2008-08-15 Release 5.9 accounting
mRpL44 2008-12-18 5.12 accounting

Clone Sequence Records

LD10028.complete Sequence

1127 bp (1127 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069395

> LD10028.complete
AAAACATATTCGTTACTTATTTTTAAGATCGCTTTAAAGATGTCATTCTT
ACGCAGTGCTGTTGGTCTCCTGGCTCGTGTCAAGCTCTTGGAGGGCTCAC
CGACTGTGCAAACGAGGCGCCACATCAAGCGATGGGTTTCGCCAACGTTA
CGTGAGCTCGCCCACCGGCAGAAGAAACTAGGACCACAAAAGCCAGAGCG
GCGTTCTGGGTTCGTGGAGTGGAACCAGCGATCGGAGCTCTTCGCGTTCG
GCAAGCGTTTGGGCGAATCCTTTGAATTGTCGGAGCTGCAGCGTGCTTTT
ACAGAGAAATCGTTTGCAGAGCGGGAGGAGGATCGTCGTCGGCAGCTAGG
CATTGAGGAGTCTGACCTCCAGATGCCTCACAATAGCGATCTGGTCGAGA
AGGGCCAACAAATTGCCCGTGCCTACGTTGAGGCCTTCCTGCAGCACCAG
TTACCGAAGGTCCCTAATGAAGGACTCCAGGCGATCGCCAGTTATCTACT
TAGCACCGAAACGCTTGCTCACGTCTCGACCCACCTGGGCACAAAGGATC
TGATACAGTCTACGGAATACCCGCCCTCGGCCGAAAGTCAGGCCAAATCT
TTACACGCAGTTATTGGCGCCCTGGCCAGTTCCAGTGGAATCGAGAGGGC
TTTCATTTTTGTACGCGATTTCATCTGCACGCAACTGAATCAAAAGGACC
TGTTGGAGGTGTGGACTCCCCAGGAACCAATCCAGCTGCTGGAGAAGATA
TGCCAGGAGCGAAAGCTGGGCGAAGCGGAGCCCCGCCTGCTTGGAGACTG
CGGAAAGAACACTGTGCTAGCCGCCTACCAAGTAGGCATCTACGCCAACC
GGCAGCTACTGGGCAAGGGATTCGGTGAAGATGTGAAAACAGCCACAGAG
ACTGCGGCACTCGACGCTCTGCAGAGCATCTTTGACACCCGCGACAACCG
GAGACCCTTTGACTTTGCCATTCAGCTAGAACCAAAGACCGTGCGACTTG
GCTGAGAATCAAAACTGGCTCTGCGTCCTTGTTGATTATTGTAATTTGCA
CTAAACACATGTACGCATGCATTGTCAGAAAAGATTGCGTTTTAAAATCA
TTTAAAAAAAAAAAAAAAAAAAAAAAA

LD10028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-RA 1181 mRpL44-RA 78..1181 1..1104 5520 100 Plus
CG12162-RA 1714 CG12162-RA 1555..1714 1105..946 800 100 Minus
CG12162-RB 1744 CG12162-RB 1585..1744 1105..946 800 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1295122..1296119 1103..106 4990 100 Minus
chr3R 27901430 chr3R 1296171..1296276 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5469461..5470460 1105..106 5000 100 Minus
3R 32079331 3R 5470512..5470617 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5210292..5211291 1105..106 5000 100 Minus
3R 31820162 3R 5211343..5211448 106..1 530 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:49:01 has no hits.

LD10028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:16 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1296171..1296276 1..106 100   Minus
chr3R 1295122..1296118 107..1103 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:18 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 1..966 40..1005 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:30 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 1..966 40..1005 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:41:54 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 1..966 40..1005 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:18 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 1..966 40..1005 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:08 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 1..966 40..1005 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:39 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 44..1146 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:30 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 44..1146 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:54 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 20..1122 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:19 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 15..1117 1..1103 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:08 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL44-RA 20..1122 1..1103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:16 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5469463..5470459 107..1103 100 <- Minus
3R 5470512..5470617 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:16 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5469463..5470459 107..1103 100 <- Minus
3R 5470512..5470617 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:16 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5469463..5470459 107..1103 100 <- Minus
3R 5470512..5470617 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:54 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1296234..1296339 1..106 100   Minus
arm_3R 1295185..1296181 107..1103 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:43 Download gff for LD10028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5210294..5211290 107..1103 100 <- Minus
3R 5211343..5211448 1..106 100   Minus

LD10028.hyp Sequence

Translation from 0 to 1004

> LD10028.hyp
KTYSLLIFKIALKMSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTL
RELAHRQKKLGPQKPERRSGFVEWNQRSELFAFGKRLGESFELSELQRAF
TEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQ
LPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYPPSAESQAKS
LHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKI
CQERKLGEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATE
TAALDALQSIFDTRDNRRPFDFAIQLEPKTVRLG*

LD10028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-PA 321 CG2109-PA 1..321 14..334 1629 100 Plus

LD10028.pep Sequence

Translation from 39 to 1004

> LD10028.pep
MSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTLRELAHRQKKLGPQ
KPERRSGFVEWNQRSELFAFGKRLGESFELSELQRAFTEKSFAEREEDRR
RQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQLPKVPNEGLQAIA
SYLLSTETLAHVSTHLGTKDLIQSTEYPPSAESQAKSLHAVIGALASSSG
IERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKLGEAEPRL
LGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSIFDT
RDNRRPFDFAIQLEPKTVRLG*

LD10028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17708-PA 321 GF17708-PA 1..321 1..321 1333 77.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11001-PA 321 GG11001-PA 1..321 1..321 1615 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18997-PA 321 GH18997-PA 1..320 1..320 1233 70.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL44-PA 321 CG2109-PA 1..321 1..321 1629 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24499-PA 321 GI24499-PA 1..321 1..321 1204 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22164-PA 322 GL22164-PA 1..321 1..321 1304 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15248-PA 322 GA15248-PA 1..321 1..321 1302 75.1 Plus
Dpse\GA22259-PA 137 GA22259-PA 1..73 191..264 270 68.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10632-PA 321 GM10632-PA 1..321 1..321 1653 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19616-PA 321 GD19616-PA 1..321 1..321 1641 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24564-PA 321 GJ24564-PA 1..321 1..321 1259 71.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11851-PA 321 GK11851-PA 1..321 1..321 1177 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25279-PA 321 GE25279-PA 1..320 1..320 1513 88.4 Plus