BDGP Sequence Production Resources |
Search the DGRC for LD10035
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 100 |
Well: | 35 |
Vector: | pBS SK- |
Associated Gene/Transcript | Top3beta-RA |
Protein status: | LD10035.pep: gold |
Sequenced Size: | 2943 |
Gene | Date | Evidence |
---|---|---|
CG3458 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3458 | 2004-10-13 | Blastp of sequenced clone |
Top3beta | 2008-04-29 | Release 5.5 accounting |
Top3beta | 2008-08-15 | Release 5.9 accounting |
Top3beta | 2008-12-18 | 5.12 accounting |
2943 bp (2943 high quality bases) assembled on 2004-10-13
GenBank Submission: BT016116
> LD10035.complete TTAAATAGAGGGGATTATACGGATGTATAGCGAGGAAGTCCAATTCATCC ATTAGCCCGTGTTCGTGTGCGTTTATGCTGTGCGTGTGCGTTTGTGTGAG TGTGTGTGCAGCACGAAACCGGCGAATCCCATGCGAGTGAACGAGTGGGC AGGAGGAAGCGCTGCAAAAATCTCATCATCAATTATATAGGCCATTGGAT TGCGGGACTTGGATTTGGGCCATGAAGAGCGTGCTGATGGTGGCCGAGAA GCCCTCGCTGGCGGCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCA CGGCCAAGCGTGGCACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGC AACTTTCGGAACGAGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGG TCATGTCATGTCGCTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGG TGGATCCCATCCAGCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAAT CCCAAGCAGAACATGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGA CTATCTGGTGCTCTGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCT TCGAGGTGATGGACGCCGTGAAGCATGTCATCAACAATGTGTACAGCGAT CAGGTGACATACCGTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAA GAAAGCCATGGAGACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGG TGGACGCCCGGCAGGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGC TTTCAAACGAAGTTCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCT GATCTCCTACGGTCCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGC GGCACGACGACATCCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAG CTCCTCGCCGGCCAGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGT CTTCAAGAAGGACATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACA AGAAGGCCACTGTGGAGAGCGTGGCCAGCAAGGAGGCCTACAAGAGCAAA CCACAGGCACTGAACACCGTCGAACTGATGCGTATCTGCAGCTCCGGACT GGGCATCGGACCCTTCCAGGCGATGCAGATAGCTGAGCGCCTGTACACGC AGGGCTACATCAGCTATCCGCGAACAGAGACCAATCAGTATCCGACTAAC TTCGATCTGCCGGCCGTGCTGCACGTGCTGAAGCCATCGGCGGACTTCGG TGAGGAGGCGCGCTCCATTTTGGGCGACATTCAGACGCCGCGAAAGGGCA AGGATGCCGGCGACCATCCACCCATCACGCCAATGAAACTGGGCAACCGC AGTGACTTCGATCGCGACACCTGGCGTGTCTACGAGTTCATCTGCCGGCA CTTCATGGGCACGGTGTCGAGGGATCTTAAGTACCGCGTGACGACGGCAA AGCTGAGTGTTGGCATGGAGACATTCAGTTGCACGGCCAGTGTGCTGATC GATGCCGGTTTCACCAAGGTGATGACGTGGTCGGCCTTCGGCAAGGACGA ACCCCAGCCGCCGTTCGTTCAGGGCACTCAGGTGGCCATCAACGATGTGC GACTTATCGAAAGCCAGACAGGACCGCCGGATTATCTCACCGAATCGGAG CTAATCACACTGATGGAGGAGCACGGCATCGGGACGGATGCCTCCATACC GGTGCACATCAACAACATCTGCCAGCGCAACTATGTGCACATTGAGAACG GTCGCAAGCTGATGCCAACGACGCTGGGCATTGTGCTGGTCCACGGCTAT CAGAAGATCGATCCGGAACTGGTGCTGCCCACCATGCGAACGGAGGTGGA GCGCATGCTGACACTGATTGCCCAGGGATCGGCTAACTTTCAGGATGTTC TGCGACACGCCATCAAGATTTTCAAGCTGAAGTTTATGTACTTTGTGAAG AACATCGACAGCATGGACGCACTGTTTGAGGTATCCTTCTCGCCGCTGGC CGAGTCGGGCAAGGCGCACTCGCGCTGCGGCAAGTGTAGGCGCTACATGA AGTACATACAGACCAAACCGGCGAGATTGCACTGCTCTCATTGCGATGAG ACATACGCCCTGCCCATTGGCAATGTGAAGGTGTATCGCGAGTTCAAGTG CCCGCTGGACGACTTTGATCTGCTGGCTTTCTCCACTGGCGTGAAGGGGC GTTCGTATCCGTTCTGCCCGTACTGTTACAACCATCCGCCGTTCAGCGAC ATGCCCCACTTGGGGGGCTGCAACACCTGCACGAACGCCAACTGCCCGCA CTCGCTGAACACGCTGGGCATCTCCAGCTGCGTGGAGTGCCCCACCGGGG TCCTGGTGCTCGATTGTACGCTTGCGCCAACCTGGAAGCTGGGCTGCAAT CGCTGCGACGTGATCATCAACTGCTTCAAGGGAGCCACCAAGATCACGGT GGAAGAGGCCAAGTGCCAGGAGTGTGGCGCCCAGCAGGTGAATGTGGTCT ACAAGTCGGACAAGAGCAAGTTCAAGGACGGAAGCGAGGAGAAGAGCGGC TGCATCTTCTGCTCCGCAGACTTCTCGCACTTGGTCGAGAAGCATCGGGC GGTGGCATCCAGACCAGTTCGCAGTGGCGGCGGCTTCCGTGGCGGCAAGG CAGGTCGAGGCGGTGGCGGAATGGGCGGGGCGGCTTTTGGCTCCGGAGGA GCGGTTACGGCTGGCGGTGGACCTAATGCTGGGGGCGGGGTGCGTGGCAG TCGAGTGGCCAAGGATAAGATGGGACAACTGGCGTCGTATTTCGTTTGAG GACACTGAATTGCATTTAGAAGAACAATAACTAAACAAGAAAAAAAAAGC CTAATAAAAACGAAATTGTATAAATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Top3beta-RA | 3312 | Top3beta-RA | 55..2983 | 1..2929 | 14645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6177617..6178667 | 2111..1061 | 5240 | 99.9 | Minus |
chrX | 22417052 | chrX | 6179007..6179755 | 1060..312 | 3745 | 100 | Minus |
chrX | 22417052 | chrX | 6176656..6177077 | 2925..2504 | 2110 | 100 | Minus |
chrX | 22417052 | chrX | 6177159..6177555 | 2505..2109 | 1970 | 99.7 | Minus |
chrX | 22417052 | chrX | 6179825..6180137 | 313..1 | 1535 | 99.4 | Minus |
chrX | 22417052 | chrX | 6172477..6172746 | 2386..2117 | 1335 | 99.6 | Minus |
chrX | 22417052 | chrX | 6172759..6172940 | 2061..1880 | 865 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CR32745-RB | 471 | CR32745-RB | 1..178 | 1884..2061 | 815 | 97.1 | Plus |
CR32745-RB | 471 | CR32745-RB | 265..404 | 2247..2386 | 700 | 100 | Plus |
CR32745-RB | 471 | CR32745-RB | 191..265 | 2117..2192 | 325 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 6285432..6286482 | 2111..1061 | 5255 | 100 | Minus |
X | 23542271 | X | 6286822..6287570 | 1060..312 | 3745 | 100 | Minus |
X | 23542271 | X | 6284467..6284892 | 2929..2504 | 2130 | 100 | Minus |
X | 23542271 | X | 6284974..6285370 | 2505..2109 | 1985 | 100 | Minus |
X | 23542271 | X | 6287640..6287952 | 313..1 | 1565 | 100 | Minus |
X | 23542271 | X | 6280300..6280562 | 2386..2117 | 1160 | 97 | Minus |
X | 23542271 | X | 6280575..6280756 | 2061..1880 | 835 | 97.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 6293530..6294580 | 2111..1061 | 5255 | 100 | Minus |
X | 23527363 | X | 6294920..6295668 | 1060..312 | 3745 | 100 | Minus |
X | 23527363 | X | 6292565..6292990 | 2929..2504 | 2130 | 100 | Minus |
X | 23527363 | X | 6293072..6293468 | 2505..2109 | 1985 | 100 | Minus |
X | 23527363 | X | 6295738..6296050 | 313..1 | 1565 | 100 | Minus |
X | 23527363 | X | 6288398..6288568 | 2386..2216 | 855 | 100 | Minus |
X | 23527363 | X | 6288673..6288854 | 2061..1880 | 835 | 97.2 | Minus |
X | 23527363 | X | 6288569..6288660 | 2209..2117 | 410 | 97.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6176656..6177075 | 2506..2925 | 100 | <- | Minus |
chrX | 6177159..6177552 | 2112..2505 | 99 | <- | Minus |
chrX | 6177617..6178667 | 1061..2111 | 99 | <- | Minus |
chrX | 6179007..6179754 | 313..1060 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 1..2628 | 222..2849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 1..2628 | 222..2849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 1..2628 | 222..2849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 1..2628 | 222..2849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 1..2628 | 222..2849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CR32745-RB | 1..185 | 1884..2070 | 95 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 13..2937 | 1..2925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 13..2937 | 1..2925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 39..2963 | 1..2925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 13..2937 | 1..2925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Top3beta-RA | 39..2963 | 1..2925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6284471..6284890 | 2506..2925 | 100 | <- | Minus |
X | 6284974..6285367 | 2112..2505 | 100 | <- | Minus |
X | 6285432..6286482 | 1061..2111 | 100 | <- | Minus |
X | 6286822..6287569 | 313..1060 | 100 | <- | Minus |
X | 6287641..6287952 | 1..312 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6284471..6284890 | 2506..2925 | 100 | <- | Minus |
X | 6284974..6285367 | 2112..2505 | 100 | <- | Minus |
X | 6285432..6286482 | 1061..2111 | 100 | <- | Minus |
X | 6286822..6287569 | 313..1060 | 100 | <- | Minus |
X | 6287641..6287952 | 1..312 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6284471..6284890 | 2506..2925 | 100 | <- | Minus |
X | 6284974..6285367 | 2112..2505 | 100 | <- | Minus |
X | 6285432..6286482 | 1061..2111 | 100 | <- | Minus |
X | 6286822..6287569 | 313..1060 | 100 | <- | Minus |
X | 6287641..6287952 | 1..312 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6178504..6178923 | 2506..2925 | 100 | <- | Minus |
arm_X | 6179007..6179400 | 2112..2505 | 100 | <- | Minus |
arm_X | 6179465..6180515 | 1061..2111 | 100 | <- | Minus |
arm_X | 6180855..6181602 | 313..1060 | 100 | <- | Minus |
arm_X | 6181674..6181985 | 1..312 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6292569..6292988 | 2506..2925 | 100 | <- | Minus |
X | 6293072..6293465 | 2112..2505 | 100 | <- | Minus |
X | 6293530..6294580 | 1061..2111 | 100 | <- | Minus |
X | 6294920..6295667 | 313..1060 | 100 | <- | Minus |
X | 6295739..6296050 | 1..312 | 100 | Minus |
Translation from 221 to 2848
> LD10035.pep MKSVLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGS VHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRK FLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAH FSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQ DRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQLLAGQPE VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTV ELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVL HVLKPSADFGEEARSILGDIQTPRKGKDAGDHPPITPMKLGNRSDFDRDT WRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEE HGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPEL VLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKFMYFVKNIDSMDA LFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIG NVKVYREFKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGC NTCTNANCPHSLNTLGISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIIN CFKGATKITVEEAKCQECGAQQVNVVYKSDKSKFKDGSEEKSGCIFCSAD FSHLVEKHRAVASRPVRSGGGFRGGKAGRGGGGMGGAAFGSGGAVTAGGG PNAGGGVRGSRVAKDKMGQLASYFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20299-PA | 878 | GF20299-PA | 1..813 | 1..813 | 4143 | 92.5 | Plus |
Dana\GF14242-PA | 1209 | GF14242-PA | 4..597 | 5..600 | 959 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17682-PA | 878 | GG17682-PA | 1..816 | 1..816 | 4268 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12112-PA | 862 | GH12112-PA | 1..862 | 1..875 | 3917 | 83.7 | Plus |
Dgri\GH11108-PA | 1269 | GH11108-PA | 4..638 | 5..636 | 961 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Top3beta-PB | 875 | CG3458-PB | 1..875 | 1..875 | 4698 | 100 | Plus |
Top3beta-PA | 875 | CG3458-PA | 1..875 | 1..875 | 4698 | 100 | Plus |
Top3alpha-PA | 1250 | CG10123-PA | 29..636 | 5..612 | 934 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16324-PA | 858 | GI16324-PA | 1..858 | 1..875 | 3951 | 84.8 | Plus |
Dmoj\GI18230-PA | 1279 | GI18230-PA | 4..596 | 5..599 | 967 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20281-PA | 875 | GL20281-PA | 1..875 | 1..875 | 4114 | 87.9 | Plus |
Dper\GL21219-PA | 1178 | GL21219-PA | 4..635 | 5..643 | 984 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17464-PA | 875 | GA17464-PA | 1..875 | 1..875 | 4114 | 87.9 | Plus |
Dpse\GA10090-PA | 1178 | GA10090-PA | 4..635 | 5..643 | 983 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12581-PA | 921 | GM12581-PA | 73..921 | 27..875 | 4532 | 97.9 | Plus |
Dsec\GM17356-PA | 1251 | GM17356-PA | 4..612 | 5..613 | 972 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16199-PA | 821 | GD16199-PA | 1..821 | 55..875 | 4387 | 98.3 | Plus |
Dsim\GD24215-PA | 857 | GD24215-PA | 4..597 | 5..600 | 971 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15664-PA | 858 | GJ15664-PA | 1..858 | 1..875 | 4001 | 85.4 | Plus |
Dvir\GJ18138-PA | 1355 | GJ18138-PA | 4..597 | 5..600 | 979 | 36.2 | Plus |
Translation from 221 to 2848
> LD10035.hyp MKSVLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGS VHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRK FLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAH FSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQ DRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQLLAGQPE VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTV ELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVL HVLKPSADFGEEARSILGDIQTPRKGKDAGDHPPITPMKLGNRSDFDRDT WRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEE HGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPEL VLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKFMYFVKNIDSMDA LFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIG NVKVYREFKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGC NTCTNANCPHSLNTLGISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIIN CFKGATKITVEEAKCQECGAQQVNVVYKSDKSKFKDGSEEKSGCIFCSAD FSHLVEKHRAVASRPVRSGGGFRGGKAGRGGGGMGGAAFGSGGAVTAGGG PNAGGGVRGSRVAKDKMGQLASYFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Top3beta-PB | 875 | CG3458-PB | 1..875 | 1..875 | 4698 | 100 | Plus |
Top3beta-PA | 875 | CG3458-PA | 1..875 | 1..875 | 4698 | 100 | Plus |
Top3alpha-PA | 1250 | CG10123-PA | 29..636 | 5..612 | 934 | 35.9 | Plus |