Clone LD10043 Report

Search the DGRC for LD10043

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:100
Well:43
Vector:pBS SK-
Associated Gene/TranscriptCG9004-RA
Protein status:LD10043.pep: gold
Preliminary Size:2634
Sequenced Size:2735

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9004 2002-01-01 Sim4 clustering to Release 2
CG9004 2003-01-01 Sim4 clustering to Release 3
CG9004 2003-08-11 Blastp of sequenced clone
CG9004 2008-04-29 Release 5.5 accounting
CG9004 2008-08-15 Release 5.9 accounting
CG9004 2008-12-18 5.12 accounting

Clone Sequence Records

LD10043.complete Sequence

2735 bp (2735 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010298

> LD10043.complete
ATTGTCAACCACAACAATTTTTAAATTCGGTCCGGCTGAAATCTCTGGTA
AAGGCCGTTTAAAATGGCAAAAATAAAGAAAAAGGAGGCGAAAGCTAAAC
CTTTGACTCGCAAGGAGCAGAGAAAACAGAAGTCGGAGTTCAAAAAACAG
AATAAACGACTTTATTTCGCCGGCAAAACTAACGGAACACAGCGCGTGGC
GGCGGCGGCAGAGGCGTTGGCAGCGCAGTCGCAGCTGGGCAAAAACAAGA
AGAAGAAACGGAGCAAGAAGCCCAAAATAATAAATCCAGATGAAATACCC
AAGGAGCAACTTTTGTCCGGTGAAATAGACAGCGACGATGACGAGTCCAT
AGATTCGGATTTCAGCGATGCGGAGGTGGATGCTCTGCTGCCCGCAAGGG
AAAAGATGGAAGTCTATGAACCTCTGGGAAAAAAGGTCAAGAAAACGACA
GGAGGCGCCATCCAAAGACAGGATGAAGAGGCGGTCAGGCGGAAGGAACT
GCGCCAGCAAAAGGAACTGGAGAGCAAGTCCAAGAAGCAGCGAATCAAGC
AACTTCGCATAGAGAACGAGGAGGATGATCGCGAGATCAACAAGCTGGAA
AAGAAGCTGAAGCTCAACAAATCCAAGGACAAAAACCGCTTGGTGCGGAA
GATGTTCAATGATGGCCTGGACTACCTGCTTGACTTTGTCCTGGATGACG
AGGAGGAGAAGCGGAAGTGGGAGGAGAAGCAGGAACGTAAGAAAAAGCTG
AAGGAGCAGCAAGAAAAGGAGGAGGCGGGAATGTGGAGCGATGAGGAAGA
GGATAAGGAGGACAGGGATGAGCCCATGGATAACTTCTCAGAAGATGACA
GTGGCTCTGAGGGTGAAGATGATGATGAAGACCTAACTGGAGAGGAAGAA
CAAAGCGAGGAGGATTCGGAGCAGGAAGAGAATGCACCTAAGATTAAAGA
GGACATCTACGGACGCAAACGCGACGCCGAGGGAAACATCCTGCCTGATC
CCGTGGAGCTCGAGGCCTCAGCCGCCGGTCAAAAGTACATACCGCCACAT
CAGCGAGCTTTGATGGCAGCCAGCGCGGGATCAAGTGAAAAACAGGCAGA
GATACTAGCTCGCCTTCTAAAGCAATGCAAGGGTCTGCTCAATCGTTTGT
CAGAAGCGAATCTGCACAAGATTGCCGCCGGCATCGAGGAGCTGTACATG
AAAAACTCCCGCTACAACATGAACGAAACACTAACCAAGTTAATTCAAGA
AGCCCTTCTCGGCTACACGCGAACCAACGAGCGAATGGTACAGGAACACA
TGGTGCTGCTGGCCTACCTACATGCCCAGGTTGGCAGCGAGATTGGAGCG
CATTTCCTGCAGACTTTTGTGGAGTTATTCGATGGTTATGTCAAGAACAT
CGCTACCCTGGAGGTGGAGGATAAGCAGCTGAATAACCTAGTACTGGTGC
TCTGCTACATGTACCTCTTCAAGATCTACGAGCTGAATTTGCTGATGGAG
CTCATAGGCAAATTGTCAGATCAGCTTTGCGAGAAGAGCGTGGAGTGCCT
TTTGCTGATCTTCCAGTCCATTGGCTTCCGGCTGCGCAAGGACGATCCAC
TGGCCTTTAAGACCATGATGCAAAAAGTTCAATCGCAAATTGCTAGTGCC
CCACTGGAACTGAAAGAGAATCCACGCCTGCGTTTCATGGTCGATATTCT
AAATGCAGTCAAAAACAACAATATGCAAAAGCTGCCGCAGTATGATCCCG
AGTTGGCGGAGAATCTGCGAAAGCGTTTGAAGGCCATGCTGAAGAATGAT
CGCTACGTGGTGACTCTGAACATAACCCTGGAGGACCTCCTGCGTGCTGA
TAAAGTGGGCAAATGGTGGATTGTGGGCTCTGCCTGGACGGGAAATCTGG
ATGAGATGGGATCCGCCAAGCAAAAGCAGGATAAGAACTCATCGAAGTCT
GCCAACGGAGGTTTTGCGGATCAGCTACTGGAGCTGGCCAGAAAGCAGCA
GATGAACACAGCCGAAAGGAGGAATATCTTCTGCATCATCATGAGCGCCG
CCGATTATGTGGACGCCTTTGAGAAGATTCTGCATTTGTCTCTGAAGGAC
CAGCGAGCGGTGGCCTACGTGATCATCCATTGCGCTCTGAATGAGAAGCG
TGCTAACCCCTATTACGCTCATTTGGCACTTAAGTTCTGTCAATTCAACA
GAAAGTATCAACTGGCTTTCCAGTTTGCCAGTTGGGACAGAATCAATGAT
ATCGAAAAGCTTTCCAAGCCGCAGATTCGCAACCTGGCTAGTTTTCTGCA
GCAAGTAATCCTAGCTGCTGGTCTGCAGCTGTCAGTGCTCAAAGTAGTCG
ACTTTATGCAGCTGGACAAGCTCAGCTTTTACTTTATGAAGGAAGTGATG
GTCAGGCTGCTTTTGGCTAACGATGAACGCGAGATTTATCAGACGTTCGA
AAGAGTTGCCAAAAACACCAAACTGCAGCAGTTTAAGCAAAGCGTAAGGC
TCTTCCTGCAGCATTTTCTTTTGCAAGAGGAACAGCTGGACAAACTTAAG
CTGAAGGACGAGGATCGACAGCTTCTGCAGCAGCGCGTTGATCACATAGA
CAAACTTTTAGCCTATGTGGACCTGTAGTTATAAGTTGTAAATTTGTAAA
ATATTCATAATGAGGATGCTATAAAACAAATAAAGGACAAGTTTTTGTAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD10043.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9004-RA 2725 CG9004-RA 23..2725 1..2703 13515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2374162..2375924 944..2703 8450 98.8 Plus
chr3L 24539361 chr3L 2373167..2374108 1..943 4545 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2374729..2376489 944..2704 8805 100 Plus
3L 28110227 3L 2373733..2374675 1..943 4715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2374729..2376489 944..2704 8805 100 Plus
3L 28103327 3L 2373733..2374675 1..943 4715 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:16:45 has no hits.

LD10043.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:29 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2373167..2373857 1..692 98 == Plus
chr3L 2373988..2374108 823..943 99 -> Plus
chr3L 2374162..2375924 944..2703 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:21 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 1..2565 64..2628 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:55:33 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 1..2565 64..2628 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:10 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 1..2565 64..2628 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:05 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 1..2565 64..2628 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:22 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 1..2565 64..2628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:08:59 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 7..2709 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:55:33 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 6..2708 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:10 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 6..2708 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:06 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 7..2709 1..2703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:22 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG9004-RA 6..2708 1..2703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:29 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2373733..2374675 1..943 100 -> Plus
3L 2374729..2376488 944..2703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:29 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2373733..2374675 1..943 100 -> Plus
3L 2374729..2376488 944..2703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:29 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2373733..2374675 1..943 100 -> Plus
3L 2374729..2376488 944..2703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:10 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2373733..2374675 1..943 100 -> Plus
arm_3L 2374729..2376488 944..2703 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:04 Download gff for LD10043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2373733..2374675 1..943 100 -> Plus
3L 2374729..2376488 944..2703 100   Plus

LD10043.hyp Sequence

Translation from 63 to 2627

> LD10043.hyp
MAKIKKKEAKAKPLTRKEQRKQKSEFKKQNKRLYFAGKTNGTQRVAAAAE
ALAAQSQLGKNKKKKRSKKPKIINPDEIPKEQLLSGEIDSDDDESIDSDF
SDAEVDALLPAREKMEVYEPLGKKVKKTTGGAIQRQDEEAVRRKELRQQK
ELESKSKKQRIKQLRIENEEDDREINKLEKKLKLNKSKDKNRLVRKMFND
GLDYLLDFVLDDEEEKRKWEEKQERKKKLKEQQEKEEAGMWSDEEEDKED
RDEPMDNFSEDDSGSEGEDDDEDLTGEEEQSEEDSEQEENAPKIKEDIYG
RKRDAEGNILPDPVELEASAAGQKYIPPHQRALMAASAGSSEKQAEILAR
LLKQCKGLLNRLSEANLHKIAAGIEELYMKNSRYNMNETLTKLIQEALLG
YTRTNERMVQEHMVLLAYLHAQVGSEIGAHFLQTFVELFDGYVKNIATLE
VEDKQLNNLVLVLCYMYLFKIYELNLLMELIGKLSDQLCEKSVECLLLIF
QSIGFRLRKDDPLAFKTMMQKVQSQIASAPLELKENPRLRFMVDILNAVK
NNNMQKLPQYDPELAENLRKRLKAMLKNDRYVVTLNITLEDLLRADKVGK
WWIVGSAWTGNLDEMGSAKQKQDKNSSKSANGGFADQLLELARKQQMNTA
ERRNIFCIIMSAADYVDAFEKILHLSLKDQRAVAYVIIHCALNEKRANPY
YAHLALKFCQFNRKYQLAFQFASWDRINDIEKLSKPQIRNLASFLQQVIL
AAGLQLSVLKVVDFMQLDKLSFYFMKEVMVRLLLANDEREIYQTFERVAK
NTKLQQFKQSVRLFLQHFLLQEEQLDKLKLKDEDRQLLQQRVDHIDKLLA
YVDL*

LD10043.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9004-PA 854 CG9004-PA 1..854 1..854 4317 100 Plus
ncm-PA 1330 CG12750-PA 80..833 5..771 208 18 Plus
CG2839-PA 826 CG2839-PA 435..716 5..306 185 21.8 Plus
CG2839-PA 826 CG2839-PA 306..554 5..289 179 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3872..4260 7..356 179 20.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 3911..4299 7..356 179 20.8 Plus
CG2839-PA 826 CG2839-PA 312..590 5..306 178 24 Plus
CG2839-PA 826 CG2839-PA 444..744 2..295 178 22.3 Plus
CG2839-PA 826 CG2839-PA 493..741 3..297 178 22.7 Plus
CG2839-PA 826 CG2839-PA 324..608 5..306 170 22.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 3547..3900 7..321 166 20.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4002..4355 7..321 165 20.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4587..4940 7..321 164 21.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4260..4615 5..321 162 19.6 Plus

LD10043.pep Sequence

Translation from 63 to 2627

> LD10043.pep
MAKIKKKEAKAKPLTRKEQRKQKSEFKKQNKRLYFAGKTNGTQRVAAAAE
ALAAQSQLGKNKKKKRSKKPKIINPDEIPKEQLLSGEIDSDDDESIDSDF
SDAEVDALLPAREKMEVYEPLGKKVKKTTGGAIQRQDEEAVRRKELRQQK
ELESKSKKQRIKQLRIENEEDDREINKLEKKLKLNKSKDKNRLVRKMFND
GLDYLLDFVLDDEEEKRKWEEKQERKKKLKEQQEKEEAGMWSDEEEDKED
RDEPMDNFSEDDSGSEGEDDDEDLTGEEEQSEEDSEQEENAPKIKEDIYG
RKRDAEGNILPDPVELEASAAGQKYIPPHQRALMAASAGSSEKQAEILAR
LLKQCKGLLNRLSEANLHKIAAGIEELYMKNSRYNMNETLTKLIQEALLG
YTRTNERMVQEHMVLLAYLHAQVGSEIGAHFLQTFVELFDGYVKNIATLE
VEDKQLNNLVLVLCYMYLFKIYELNLLMELIGKLSDQLCEKSVECLLLIF
QSIGFRLRKDDPLAFKTMMQKVQSQIASAPLELKENPRLRFMVDILNAVK
NNNMQKLPQYDPELAENLRKRLKAMLKNDRYVVTLNITLEDLLRADKVGK
WWIVGSAWTGNLDEMGSAKQKQDKNSSKSANGGFADQLLELARKQQMNTA
ERRNIFCIIMSAADYVDAFEKILHLSLKDQRAVAYVIIHCALNEKRANPY
YAHLALKFCQFNRKYQLAFQFASWDRINDIEKLSKPQIRNLASFLQQVIL
AAGLQLSVLKVVDFMQLDKLSFYFMKEVMVRLLLANDEREIYQTFERVAK
NTKLQQFKQSVRLFLQHFLLQEEQLDKLKLKDEDRQLLQQRVDHIDKLLA
YVDL*

LD10043.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24916-PA 847 GF24916-PA 1..847 1..854 3338 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14862-PA 855 GG14862-PA 1..855 1..854 3782 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16479-PA 846 GH16479-PA 13..846 15..854 3051 72.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9004-PA 854 CG9004-PA 1..854 1..854 4317 100 Plus
ncm-PA 1330 CG12750-PA 80..833 5..771 208 18 Plus
CG2839-PA 826 CG2839-PA 435..716 5..306 185 21.8 Plus
CG2839-PA 826 CG2839-PA 306..554 5..289 179 23 Plus
Strn-Mlck-PT 7905 CG44162-PT 3872..4260 7..356 179 20.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 3911..4299 7..356 179 20.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 3872..4260 7..356 179 20.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 3911..4299 7..356 179 20.8 Plus
CG2839-PA 826 CG2839-PA 312..590 5..306 178 24 Plus
CG2839-PA 826 CG2839-PA 444..744 2..295 178 22.3 Plus
CG2839-PA 826 CG2839-PA 493..741 3..297 178 22.7 Plus
rudhira-PE 2075 CG43154-PE 1365..1657 5..310 174 21.2 Plus
rudhira-PC 2075 CG43154-PC 1365..1657 5..310 174 21.2 Plus
CG2839-PA 826 CG2839-PA 324..608 5..306 170 22.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 3547..3900 7..321 166 20.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 3586..3939 7..321 166 20.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 3547..3900 7..321 166 20.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 3586..3939 7..321 166 20.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4002..4355 7..321 165 20.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4041..4394 7..321 165 20.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4002..4355 7..321 165 20.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 4041..4394 7..321 165 20.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4587..4940 7..321 164 21.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 4626..4979 7..321 164 21.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 4587..4940 7..321 164 21.1 Plus
Strn-Mlck-PU 8255 CG44162-PU 4626..4979 7..321 164 21.1 Plus
Caf1-180-PB 1183 CG12109-PB 355..641 2..287 164 22.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4260..4615 5..321 162 19.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4299..4654 5..321 162 19.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4260..4615 5..321 162 19.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 4299..4654 5..321 162 19.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12150-PA 841 GI12150-PA 1..841 1..854 3000 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24654-PA 571 GL24654-PA 10..571 294..854 2628 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21469-PA 852 GA21469-PA 1..852 1..854 3378 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14487-PA 854 GM14487-PA 1..854 1..854 4346 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13684-PA 673 GD13684-PA 4..670 79..744 2973 93.9 Plus
Dsim\GD13685-PA 90 GD13685-PA 1..90 765..854 442 97.8 Plus
Dsim\GD13683-PA 71 GD13683-PA 13..45 13..45 169 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13430-PA 845 GJ13430-PA 16..845 14..854 3045 74.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12640-PA 865 GK12640-PA 1..865 1..854 2999 71.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20318-PA 854 GE20318-PA 13..854 13..854 3694 95.8 Plus