Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD10051.complete Sequence
1864 bp (1864 high quality bases) assembled on 2001-11-09
GenBank Submission: AY070877
> LD10051.complete
GAAGGCAAGGGCCGCAATCTAATGCGGGAAAATTTCAGTTTCAGCATAAA
ACATTAGGATCGAATCTTCGGGTTACGAGAATATCCAGGGAATACCATGT
CCAAGGTGCTTATGTAAATTGCCTTGACTTCGGAAAGTCGGTGGTTTGAA
GTAACCTAACCTTTACGGGTTTTTACCATTCTTCAACTGAAAAAGTTTGA
TTAGGTAGGTATCGTTTCCAGCACTTTTGGTAATCTGCATAAATTTAACA
CATTTTTAGCAATCCAACTTGCCAGAAGGAGTCGAGAGGAAACGGAAACG
GATCTCCTAGTTCCGCATCAAACCCTACATGTCACCATATTTGTTTTCGC
GTCAATTTTGATTTATGTGTGGCATAATTCCAGGCGTTATAAACTGTTTT
TGACAGCCGAGTTGGGTTTGCGTATGTGGCTGGGGCTGTGGGTGGTTGAA
TGGTTGGCTGTAGAGCTTGTGGGTGACGTACGCATGAGTTATGGCTAGTA
CCTGCATCTATTACTTAGCATTTGATAAGGGTTCGGTTGTAACATATATG
CTAATTTGACTCCTTCTGCGTAAACTATTTTGCAAATCGCCCGCCGTTCT
TCATTAGCCGTGATAAATGGAATTACAGTTTATTTAATTAACGCATTGGA
CGTCCTTAGTGCGGGTTGACATACACACAGCTATTCAATCTCTTTCAAAT
ATTCCAAACGCACACAGTAACAAGCCGGACAATATGTTGAATTACATTTA
TCCTTTTCGGTACAAAGTCGTTGCAGAAACTTGAAGTTCCCAAAAGCAGA
CTGGTATTGTGGTATCAACAGTACTTCAATTTGGCCATACATACATGCTT
TAAGTGGTGATTATCCAACTTAGCTATAACTTCCAAAAACGGCTTTAATT
TGATAAGCCACGTTAAATGTCTCTCCATTCATTACATAGTCCTTAAAGAA
GAGGCGAAGGGAAAGGACTTATAGTATAGCTTTGTTTATTTCTCCCAGAA
ACAACAACTCTTAGCCATTTGCGACTACACAGGCCGGACTATTCAGACTC
CACTTGCATCGTTATTAGAGCCGAGTAAACAGAATATAGGTCTTCCGGGA
GAGTGCATACACTGTGTACTTAGTTGTGTGTACCTTCACTCACATACAAG
CATATGAATATTCTGCCTGACTGGACCCCCTGACGGCACCCCAATTATAA
CGCGCTAAACAATAAAGAAAATAATAATAAAACGCCAGTGCTCACACATG
TTTGCCGTACACACCAGACTGTGTGCCTGTGTTTGTCCTGAGCAACCCTC
GCTAATGAAGCTGCAGCTCAGCTATGTTTGCACACGCAATTTGGCTTCGC
CTTGCTCCTTCCTCGACAAAGACCCGGGGACCAGGACGAGGACCTGGACC
TGGAGCTGGACTAGGACTTAAAACTGGAACTGGAACTGGACGTGGTCCTG
AGGTGTGGCCGAGAGTGAAAGAGGGCCAGGGCCAGGGATTATCACCAGCA
GCAATAGACCGAGTCGAACAGATCGAAAAACAACAGAAAAAGTCCGCATG
AGCCGAATAATTGATACCCTGTCGGTTGGCCTACCCCGGAGGGATACTTT
TCAAATCGTCCGCGAGAGCTCTGAACAATACGCAGCAAAATAAATGACTA
CTGTGTCCGCTCGTAAATTAAAAGTTGTTGGCTCGTAGACGAATCGGTAC
AGCTCAAACCACCATCTGCCACAATAAAAAAAAGGCTGTACAGATCAGTG
GGGGGGTTAAGGTAGTAAGAACAATATGACTCTTTGTTTAGATATTAATC
TTATAAGTTTTTATTATTTTTATTAATATCAAGAACAAAGCCTAAAAAAA
AAAAAAAAAAAAAA
LD10051.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15234-RA | 1843 | CG15234-RA | 1..1843 | 1..1843 | 9215 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 2494187..2495276 | 1843..754 | 5405 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 2495327..2496046 | 762..43 | 3600 | 100 | Minus |
chr2R | 21145070 | chr2R | 2500166..2500209 | 44..1 | 220 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6606988..6608079 | 1845..754 | 5445 | 99.9 | Minus |
2R | 25286936 | 2R | 6608130..6608849 | 762..43 | 3600 | 100 | Minus |
2R | 25286936 | 2R | 6612970..6613013 | 44..1 | 220 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 6608187..6609278 | 1845..754 | 5445 | 99.9 | Minus |
2R | 25260384 | 2R | 6609329..6610048 | 762..43 | 3600 | 100 | Minus |
2R | 25260384 | 2R | 6614169..6614212 | 44..1 | 220 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 15:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1360 | 3409 | 1360 1360 3409bp | 2474..2572 | 1829..1721 | 115 | 63.3 | Minus |
LD10051.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:20 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 2494187..2495270 | 760..1843 | 99 | <- | Minus |
chr2R | 2495330..2496044 | 45..759 | 100 | <- | Minus |
chr2R | 2500166..2500209 | 1..44 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:22 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15234-RA | 1..228 | 1324..1551 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:41 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15234-RA | 1..228 | 1324..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:49 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15234-RA | 1..1843 | 1..1843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:41 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15234-RA | 1..1843 | 1..1843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6606990..6608073 | 760..1843 | 100 | <- | Minus |
2R | 6608133..6608847 | 45..759 | 100 | <- | Minus |
2R | 6612970..6613013 | 1..44 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6606990..6608073 | 760..1843 | 100 | <- | Minus |
2R | 6608133..6608847 | 45..759 | 100 | <- | Minus |
2R | 6612970..6613013 | 1..44 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6606990..6608073 | 760..1843 | 100 | <- | Minus |
2R | 6608133..6608847 | 45..759 | 100 | <- | Minus |
2R | 6612970..6613013 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2494495..2495578 | 760..1843 | 100 | <- | Minus |
arm_2R | 2495638..2496352 | 45..759 | 100 | <- | Minus |
arm_2R | 2500475..2500518 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2494495..2495578 | 760..1843 | 100 | <- | Minus |
arm_2R | 2495638..2496352 | 45..759 | 100 | <- | Minus |
arm_2R | 2500475..2500518 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2494495..2495578 | 760..1843 | 100 | <- | Minus |
arm_2R | 2495638..2496352 | 45..759 | 100 | <- | Minus |
arm_2R | 2500475..2500518 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:58 Download gff for
LD10051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6608189..6609272 | 760..1843 | 100 | <- | Minus |
2R | 6609332..6610046 | 45..759 | 100 | <- | Minus |
2R | 6614169..6614212 | 1..44 | 100 | | Minus |
LD10051.pep Sequence
Translation from 1323 to 1550
> LD10051.pep
MFAHAIWLRLAPSSTKTRGPGRGPGPGAGLGLKTGTGTGRGPEVWPRVKE
GQGQGLSPAAIDRVEQIEKQQKKSA*
LD10051.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19471-PA | 76 | GM19471-PA | 1..51 | 1..53 | 149 | 77.4 | Plus |
LD10051.hyp Sequence
Translation from 1323 to 1550
> LD10051.hyp
MFAHAIWLRLAPSSTKTRGPGRGPGPGAGLGLKTGTGTGRGPEVWPRVKE
GQGQGLSPAAIDRVEQIEKQQKKSA*
Sequence LD10051.hyp has no blast hits.