Clone LD10051 Report

Search the DGRC for LD10051

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:100
Well:51
Vector:pBS SK-
Associated Gene/TranscriptCG15234-RA
Protein status:LD10051.pep: validated full length
Preliminary Size:2069
Sequenced Size:1864

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15234 2001-01-01 Release 2 assignment
CG15234 2001-11-09 Blastp of sequenced clone
CG15234 2003-01-01 Sim4 clustering to Release 3
CG15234 2008-04-29 Release 5.5 accounting
CG15234 2008-08-15 Release 5.9 accounting
CG15234 2008-12-18 5.12 accounting

Clone Sequence Records

LD10051.complete Sequence

1864 bp (1864 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070877

> LD10051.complete
GAAGGCAAGGGCCGCAATCTAATGCGGGAAAATTTCAGTTTCAGCATAAA
ACATTAGGATCGAATCTTCGGGTTACGAGAATATCCAGGGAATACCATGT
CCAAGGTGCTTATGTAAATTGCCTTGACTTCGGAAAGTCGGTGGTTTGAA
GTAACCTAACCTTTACGGGTTTTTACCATTCTTCAACTGAAAAAGTTTGA
TTAGGTAGGTATCGTTTCCAGCACTTTTGGTAATCTGCATAAATTTAACA
CATTTTTAGCAATCCAACTTGCCAGAAGGAGTCGAGAGGAAACGGAAACG
GATCTCCTAGTTCCGCATCAAACCCTACATGTCACCATATTTGTTTTCGC
GTCAATTTTGATTTATGTGTGGCATAATTCCAGGCGTTATAAACTGTTTT
TGACAGCCGAGTTGGGTTTGCGTATGTGGCTGGGGCTGTGGGTGGTTGAA
TGGTTGGCTGTAGAGCTTGTGGGTGACGTACGCATGAGTTATGGCTAGTA
CCTGCATCTATTACTTAGCATTTGATAAGGGTTCGGTTGTAACATATATG
CTAATTTGACTCCTTCTGCGTAAACTATTTTGCAAATCGCCCGCCGTTCT
TCATTAGCCGTGATAAATGGAATTACAGTTTATTTAATTAACGCATTGGA
CGTCCTTAGTGCGGGTTGACATACACACAGCTATTCAATCTCTTTCAAAT
ATTCCAAACGCACACAGTAACAAGCCGGACAATATGTTGAATTACATTTA
TCCTTTTCGGTACAAAGTCGTTGCAGAAACTTGAAGTTCCCAAAAGCAGA
CTGGTATTGTGGTATCAACAGTACTTCAATTTGGCCATACATACATGCTT
TAAGTGGTGATTATCCAACTTAGCTATAACTTCCAAAAACGGCTTTAATT
TGATAAGCCACGTTAAATGTCTCTCCATTCATTACATAGTCCTTAAAGAA
GAGGCGAAGGGAAAGGACTTATAGTATAGCTTTGTTTATTTCTCCCAGAA
ACAACAACTCTTAGCCATTTGCGACTACACAGGCCGGACTATTCAGACTC
CACTTGCATCGTTATTAGAGCCGAGTAAACAGAATATAGGTCTTCCGGGA
GAGTGCATACACTGTGTACTTAGTTGTGTGTACCTTCACTCACATACAAG
CATATGAATATTCTGCCTGACTGGACCCCCTGACGGCACCCCAATTATAA
CGCGCTAAACAATAAAGAAAATAATAATAAAACGCCAGTGCTCACACATG
TTTGCCGTACACACCAGACTGTGTGCCTGTGTTTGTCCTGAGCAACCCTC
GCTAATGAAGCTGCAGCTCAGCTATGTTTGCACACGCAATTTGGCTTCGC
CTTGCTCCTTCCTCGACAAAGACCCGGGGACCAGGACGAGGACCTGGACC
TGGAGCTGGACTAGGACTTAAAACTGGAACTGGAACTGGACGTGGTCCTG
AGGTGTGGCCGAGAGTGAAAGAGGGCCAGGGCCAGGGATTATCACCAGCA
GCAATAGACCGAGTCGAACAGATCGAAAAACAACAGAAAAAGTCCGCATG
AGCCGAATAATTGATACCCTGTCGGTTGGCCTACCCCGGAGGGATACTTT
TCAAATCGTCCGCGAGAGCTCTGAACAATACGCAGCAAAATAAATGACTA
CTGTGTCCGCTCGTAAATTAAAAGTTGTTGGCTCGTAGACGAATCGGTAC
AGCTCAAACCACCATCTGCCACAATAAAAAAAAGGCTGTACAGATCAGTG
GGGGGGTTAAGGTAGTAAGAACAATATGACTCTTTGTTTAGATATTAATC
TTATAAGTTTTTATTATTTTTATTAATATCAAGAACAAAGCCTAAAAAAA
AAAAAAAAAAAAAA

LD10051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15234-RA 1843 CG15234-RA 1..1843 1..1843 9215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2494187..2495276 1843..754 5405 99.7 Minus
chr2R 21145070 chr2R 2495327..2496046 762..43 3600 100 Minus
chr2R 21145070 chr2R 2500166..2500209 44..1 220 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6606988..6608079 1845..754 5445 99.9 Minus
2R 25286936 2R 6608130..6608849 762..43 3600 100 Minus
2R 25286936 2R 6612970..6613013 44..1 220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6608187..6609278 1845..754 5445 99.9 Minus
2R 25260384 2R 6609329..6610048 762..43 3600 100 Minus
2R 25260384 2R 6614169..6614212 44..1 220 100 Minus
Blast to na_te.dros performed 2019-03-15 15:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 2474..2572 1829..1721 115 63.3 Minus

LD10051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:20 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2494187..2495270 760..1843 99 <- Minus
chr2R 2495330..2496044 45..759 100 <- Minus
chr2R 2500166..2500209 1..44 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:22 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
CG15234-RA 1..228 1324..1551 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:41 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
CG15234-RA 1..228 1324..1551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:49 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
CG15234-RA 1..1843 1..1843 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:41 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
CG15234-RA 1..1843 1..1843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6606990..6608073 760..1843 100 <- Minus
2R 6608133..6608847 45..759 100 <- Minus
2R 6612970..6613013 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6606990..6608073 760..1843 100 <- Minus
2R 6608133..6608847 45..759 100 <- Minus
2R 6612970..6613013 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:20 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6606990..6608073 760..1843 100 <- Minus
2R 6608133..6608847 45..759 100 <- Minus
2R 6612970..6613013 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2494495..2495578 760..1843 100 <- Minus
arm_2R 2495638..2496352 45..759 100 <- Minus
arm_2R 2500475..2500518 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2494495..2495578 760..1843 100 <- Minus
arm_2R 2495638..2496352 45..759 100 <- Minus
arm_2R 2500475..2500518 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:59 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2494495..2495578 760..1843 100 <- Minus
arm_2R 2495638..2496352 45..759 100 <- Minus
arm_2R 2500475..2500518 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:58 Download gff for LD10051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6608189..6609272 760..1843 100 <- Minus
2R 6609332..6610046 45..759 100 <- Minus
2R 6614169..6614212 1..44 100   Minus

LD10051.pep Sequence

Translation from 1323 to 1550

> LD10051.pep
MFAHAIWLRLAPSSTKTRGPGRGPGPGAGLGLKTGTGTGRGPEVWPRVKE
GQGQGLSPAAIDRVEQIEKQQKKSA*

LD10051.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19471-PA 76 GM19471-PA 1..51 1..53 149 77.4 Plus

LD10051.hyp Sequence

Translation from 1323 to 1550

> LD10051.hyp
MFAHAIWLRLAPSSTKTRGPGRGPGPGAGLGLKTGTGTGRGPEVWPRVKE
GQGQGLSPAAIDRVEQIEKQQKKSA*
Sequence LD10051.hyp has no blast hits.