Clone LD10058 Report

Search the DGRC for LD10058

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:100
Well:58
Vector:pBS SK-
Associated Gene/TranscriptCG4844-RA
Protein status:LD10058.pep: wuzgold
Preliminary Size:2434
Sequenced Size:2418

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18431 2001-01-01 Release 2 assignment
CG4844 2001-01-01 Release 2 assignment
CG33006 2001-11-09 Blastp of sequenced clone
CG33006 2003-01-01 Sim4 clustering to Release 3
CG4844 2008-04-29 Release 5.5 accounting
CG18431 2008-08-15 Release 5.9 accounting
CG4844 2008-08-15 Release 5.9 accounting
CG4844 2008-12-18 5.12 accounting
CG18431 2008-12-18 5.12 accounting

Clone Sequence Records

LD10058.complete Sequence

2418 bp (2418 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069396

> LD10058.complete
TGAACGCGACGTGAAGTGCTGAACTCTCCAAACTCTACGAACTCCAAACA
CTTCTTCTTTGGAGCCACCTCGATCGCGCGTCCCCAAAACGCTGAGAACC
CGATTCGTATTCCCCGATCGTCGCCAGTGGCAATTAGATAGTGCTCCGCG
CTCCCACCAATCCAACCCATTCGAAGCAAAGATGGCCAAAATCGTACTCT
TCTGCCTGCTGAGCCTCTTGGCATGCGCTGCAGGTCAACGCATTACGACA
ATCCACCTGGATGGAGTGCAGTACTTCATCAGCCGAATGGATCCCTACTC
CCCGGAGCTCAACTACTTCCTGGCCTACCAGTACTGTCGCTCCCTGGGCC
TGCAACTGGCCTCCTTTGAGACGAAGGAGAAGGCCGAGTCGATGACCACG
TATCTGAAGAATGCCGGTTACGGCAACTACGATTTCTGGACCTCCGGCAA
TCGCCTGGGCACGGGCATGTTCCTATGGATGAGCACTGGTCTGCCGTTTA
ACGCCACTTTTGATTTCTTCGAAAACTCGGCGGACGCCATCCAGGCCGGT
CTGCTCGATCCCGTCGATCATAATAGCAACACCTCACCCCAGCGCACCGC
TCGCGACAGCAGCAGTGGCGCCGAGAAGGGATGCGTGATCCTGAAGCAGC
CCACGCTCAAGTGGATGCCCGAGGACTGCTCGGCCGTGAAGGACTTCATT
TGTGAGCAGACCCGCTGCTACTACTACAACTACGGCAGCATCCCCGTCTC
GTCGGCGCAGGGGTAAGGACACTTGACCGCGGAGCCACTCCACATAACTC
CACCACTCTACACAACCACACGCAAATCGAACAGATATTAAGAGCACTGA
TTGGAGGAGGAACTAAGAATAATGATAATAATGCAATAAACAAATTATGC
TATAATTAACGTTAATTAATTCGCTATACGAGCTGCCCGCCGGTGGCGCT
TAAACAAATGTCCCTAATTAAGTAAAGACAAACGAAAACATATTTATACC
AGATAAATGTTGATACTAAAAACCCAACCCAGATCAAGAGATTACGCAAG
GATAACGTGATTAAAAACAAGTTACTTTAGTTGACCATAAACGAACACAC
ACACACACTTACACTTAGACACACACACACACATTGACAAAGTGCGAATC
CGATTTCGATTCCCAAAACAGAATTTGCAAAAAGAACGAACAAATAGACG
TCCCATCACCTCCACCACCCCAAGGACTCCTGCCTCCCTGATGAACCTGC
ATGTGGCCGCCACCACCACACCCTTGCCCCTGCTGATGTCCACCAGTGGA
GCAATGTACACCGCTGCCAAGGCCAAATCTTCGCCAGCCGTTGGCCACCG
ACTGATCGATGATTCCAGCTCCCAGCAGCAACCCTCGTTTATGTCCTTTA
AGCTGAACCATGATCGCTCGCTGCCCGATACGGATTCCACTGACGTGGAT
GTGGAGGATCAGGAAGCGGATTTGGATGGCGAGGAGCACGATGACCATGA
GGCCGAGGGCGAAGAGGAGCATGACGAGCACGACAACTTCGAGGAGCATG
CCCGTGAGCTGAGCAACGACAACGATGGCGATATCAAGGAGCACGTATTC
CCACTGAGCGACAACGAACTCCACCCCGAGGTGCATTCGATCGAAGAGGT
ACAGCAGCAGTTGCAGCAGGAGGATGCGGATGCGGACTCGGCACCAGCTC
CCGCGGCGGCTGAGGATAACGAGAGCTCGCAACACGATGCGGAGGCGGAT
GGAGAGCACGAGCAGGATGGAGCTGAGGGCGAGACTGACTTGGAAAATGA
GACGCCGGTGGATCTTATCAAGGCCAACGAACCATTGGCGATGCCCAGCT
CCACTGAATCCCCAGCCGCCGCCATCGAGGAGCGCATCAAGCAGATCGCC
CAGGACTTCCAGAAAATGGCCAGCTCCCAGGAGCTGCAGCCCAAGGAGGA
GCTGACCCCCCAATCCTCCCTGTCACTCAACGATCTGATACGCACCCTGC
GGCCCAACGAACAGCAGATCATTCCGCAGATCGATTCGGACTACTCCAAT
GCCATGCGTGTCCTCGGCAAGCCAATGGCGGCCAATAACTAGGCATCTCC
TTTCCCACGAATGCCACTAGCCTAAGTTGTGTGTGTGTTTGGGTCGAGGT
GTTATCCAGCCGGGCATCCGGGTTCCACTGAGGAATGGCCATTTTCGAGA
GCCGGCCGGACATGTCCGAAAATGACGCTTCTCTCTGAGGACCTCGATGC
CAATGGATGACCGCGCTGAAATGCAGCGAGAGATTAAAGGAGCTAAGACA
TTAATCTATATATAAATATATATGTATTGTATGCTTTAATTGTATGACAA
CCACCACAAAAAAAAGGAAACTCTTGATTAATAAACGTAATAAGTAAATA
AAAAAAAAAAAAAAAAAA

LD10058.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18431-RA 2401 CG18431-RA 1..2401 1..2401 11990 99.9 Plus
CG4844-RA 2401 CG4844-RA 1..2401 1..2401 11990 99.9 Plus
MB8.b 2007 MB8.b 1112..2007 1197..2092 4480 100 Plus
MB8.b 2007 MB8.b 351..1112 1..762 3795 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13394506..13395711 1195..2399 5770 98.8 Plus
chr2R 21145070 chr2R 13393219..13393810 606..1197 2960 100 Plus
chr2R 21145070 chr2R 13392699..13393076 232..609 1875 99.7 Plus
chr2R 21145070 chr2R 13389792..13390026 1..235 1175 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507441..17508647 1195..2401 6035 100 Plus
2R 25286936 2R 17506154..17506745 606..1197 2960 100 Plus
2R 25286936 2R 17505634..17506011 232..609 1875 99.7 Plus
2R 25286936 2R 17502728..17502962 1..235 1175 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17508640..17509846 1195..2401 6035 100 Plus
2R 25260384 2R 17507353..17507944 606..1197 2960 100 Plus
2R 25260384 2R 17506833..17507210 232..609 1875 99.7 Plus
2R 25260384 2R 17503927..17504161 1..235 1175 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:59:16 has no hits.

LD10058.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:00:36 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13389792..13390024 1..233 100 -> Plus
chr2R 13392701..13393076 234..609 99 -> Plus
chr2R 13393223..13393810 610..1197 93 -> Plus
chr2R 13394509..13395711 1198..2399 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:24 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 1241..2092 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:47 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 1241..2092 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:16 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 1..580 182..761 99 == Plus
CG43164-RC 581..1476 1197..2092 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:30 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 1241..2092 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:26 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RC 581..1476 1197..2092 100   Plus
CG43164-RC 1..580 182..761 99 == Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:15 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 1..2399 1..2399 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:47 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 1..2399 1..2399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:16 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RA 52..2450 1..2399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:30 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 1..2399 1..2399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:26 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RA 52..2450 1..2399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:36 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17502728..17502960 1..233 100 -> Plus
2R 17505636..17506011 234..609 99 -> Plus
2R 17506158..17506745 610..1197 100 -> Plus
2R 17507444..17508645 1198..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:36 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17502728..17502960 1..233 100 -> Plus
2R 17505636..17506011 234..609 99 -> Plus
2R 17506158..17506745 610..1197 100 -> Plus
2R 17507444..17508645 1198..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:36 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17502728..17502960 1..233 100 -> Plus
2R 17505636..17506011 234..609 99 -> Plus
2R 17506158..17506745 610..1197 100 -> Plus
2R 17507444..17508645 1198..2399 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:16 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13390233..13390465 1..233 100 -> Plus
arm_2R 13393141..13393516 234..609 99 -> Plus
arm_2R 13393663..13394250 610..1197 100 -> Plus
arm_2R 13394949..13396150 1198..2399 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:34 Download gff for LD10058.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17503927..17504159 1..233 100 -> Plus
2R 17506835..17507210 234..609 99 -> Plus
2R 17507357..17507944 610..1197 100 -> Plus
2R 17508643..17509844 1198..2399 100   Plus

LD10058.hyp Sequence

Translation from 1240 to 2091

> LD10058.hyp
MNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDSSSQQQPSF
MSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEEEHDEHDNF
EEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQQEDADADS
APAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDLIKANEPLA
MPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQSSLSLNDLI
RTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*

LD10058.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-PE 490 CG43164-PE 208..490 1..283 1454 100 Plus
CG43164-PC 491 CG43164-PC 209..491 1..283 1454 100 Plus

LD10058.pep Sequence

Translation from 1240 to 2091

> LD10058.pep
MNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDSSSQQQPSF
MSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEEEHDEHDNF
EEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQQEDADADS
APAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDLIKANEPLA
MPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQSSLSLNDLI
RTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*

LD10058.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19831-PA 264 GF19831-PA 1..264 1..283 826 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20689-PA 283 GG20689-PA 1..283 1..283 1143 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21409-PA 280 GH21409-PA 1..257 16..281 511 53.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
nw-PE 490 CG43164-PE 208..490 1..283 1454 100 Plus
nw-PC 491 CG43164-PC 209..491 1..283 1454 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21026-PA 283 GI21026-PA 15..265 26..281 550 55.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11432-PA 287 GL11432-PA 1..287 1..283 793 65 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24726-PA 287 GA24726-PA 1..287 1..283 791 65 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21786-PA 238 GM21786-PA 34..233 1..200 739 92.5 Plus
Dsec\GM21788-PA 58 GM21788-PA 1..58 226..283 286 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11277-PA 283 GD11277-PA 1..283 1..283 1441 98.6 Plus
Dsim\GD13709-PA 276 GD13709-PA 1..246 1..253 821 85.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21953-PA 274 GJ21953-PA 1..256 16..281 557 55.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22905-PA 238 GK22905-PA 1..238 51..283 495 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\anon-EST:fe2D7-PA 283 GE11673-PA 1..283 1..283 1186 94 Plus