BDGP Sequence Production Resources |
Search the DGRC for LD10092
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 100 |
Well: | 92 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rad9-RA |
Protein status: | LD10092.pep: gold |
Preliminary Size: | 1951 |
Sequenced Size: | 1765 |
Gene | Date | Evidence |
---|---|---|
CG3945 | 2001-01-01 | Release 2 assignment |
CG3945 | 2001-10-10 | Blastp of sequenced clone |
CG3945 | 2003-01-01 | Sim4 clustering to Release 3 |
Rad9 | 2008-04-29 | Release 5.5 accounting |
Rad9 | 2008-08-15 | Release 5.9 accounting |
Rad9 | 2008-12-18 | 5.12 accounting |
1765 bp (1765 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061116
> LD10092.complete AATTTCGCGACCAAAAACATAGTGCAAATATTGCCAATGAAATACACTTT AGAGGGCAGCAATGCAAGAGTCATCGCCAAAGCCGTACAATCGCTGTCCA AGGTGGGCAAGGAGATGTTCATCGAGATCGACCAGCAATCCTTGCAGATG CGGGCCATAAATGCCACCCAATCCGCAGTGGGCAGCATATCGTTCAAAAG ATCCATGTTCGAAGTGTATGACATGCCGCCGCACTCAGATTTCTACTGCA AGATCTCCATGAAGGGATGTTTGGCCGTGTTCCGCAACATGAATGAGGTG GAGTACTGTGAACTCAACTTGCTGGACAACCAGACCAACCTGCAGGTGAA TCTCCGCTGTAAGCTGGAGACCACAAAGGAGGCCACCATTTCCATCATAG ACGACCAAAACATTAACACAAACATTAACACCGATCAGATGCCGAATATA ATCCGTGGCGATCACAAGCTGTTGACGGATATATCCAATAACTTTAACTC CTCAGAGGAGGAACTTACTTTGGAGGCAAACTCGGGCAGTGTGGTGGCCA AAAACTACATAGAAGGAGCCCGAGTTAATGATAAGTTCATGCGCACGCAG CTGAAACTTAAGCCCAGTGAATTTGAGCAGTACCAGGTAACGAAGGAGAC GGTCATTACATTCTGCATTAAGGAATTCCGAGCATTTCTCCTCTTCGCCG AGTGCTTAAATGCTTCGCTGACCCTGGAGTTCGACGAAGCGGGCATGCCT TTCCTGCTCAAAATTAAGAAGCATGGCGAGATTGAATGCTTGCTGATCAT GTCCACGCTATCCCCCGATGATATAAGCTTCTCGGAAGATTATTGTCAAA AGGATCTGACAGTGCAGGATGAGGATGTACGAGCGGCGGCCGCAAAGCGA AAGAGCAGCGTTTCGAAGCCGAATGTGACCAACAAACGCAAAGGCAGCTC TTCGGAACCGGCTGCAGTGCAGCCAAAACGGCGAGTTGAGGAGACCCAAT TAGAATCGAGCCTAGATAATCCACTGTTTCAGTTCCGGGACTCGGAGGCG CCATCTGTTCAGCACCCTCGCATCCTAGCCGAGGTGGACACTGTGGTTCT GATTGAAGATGAGGCGGAACAAGAGGCTCTCATGCTGGCAGCCGCGGATG CCGCTTTGGAGGCCAGCATGGCACCTGCTCCAGAGCCGCCGAACAGCACG GAGGTTTGCTTTATCAACACAGACGACTCTCAACAACCTAAACCTGCGAA AAGCTCCTCCGACGAGGACGAAACTATACCCCAGTCACCTGAGCGCCCTA ACAAGGTCCTGGGCGTTCTTCTGGGCCTGCTGCAGGGATGTGTGAGCCGA CTGAAGACTATGTTGCGACTTGATGAGCATTTGATCAGTGGTTACGAGCT GCTTTGATGCACTCAACACAAAGCTGCGAGTGAAAGCGCTCCTCGTCGGA TTCAGAAGCTTCACCGCTCACCAAATCAGCCATCATTCAGTTTATTAAAT ACTATTGTAAACAATTTTTTATTTACTGCAGTTACGGCGCTGCCAGATCA GTTAAAACTGCAAACTGTTGCTCACATGGGCGCAGTTGAAGGGGATATTC TTATGTTTGTGATATCTATGCTAACAGATCCGTAGAACTACAATCATAAA AATTATTAACGGATAATGAATGGTATTAGTAACACTTTGCCCATTACTCA GAAGACGATGTAATCTCAATAAGCGCAAAACATAAATTTTAAAAGCAAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rad9-RA | 1791 | Rad9-RA | 45..1791 | 1..1747 | 8735 | 100 | Plus |
Rad9-RB | 1454 | Rad9-RB | 45..1351 | 1..1307 | 6535 | 100 | Plus |
CG34255-RA | 560 | CG34255-RA | 285..419 | 1438..1304 | 675 | 100 | Minus |
CG34255-RA | 560 | CG34255-RA | 1..100 | 1537..1438 | 500 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18860605..18861462 | 1307..450 | 4215 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 18859652..18859962 | 1746..1438 | 1460 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 18861775..18862005 | 299..69 | 1140 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 18861571..18861724 | 449..296 | 770 | 100 | Minus |
chr3L | 24539361 | chr3L | 18860257..18860391 | 1438..1304 | 675 | 100 | Minus |
chr3L | 24539361 | chr3L | 18862060..18862129 | 70..1 | 335 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18870996..18871853 | 1307..450 | 4290 | 100 | Minus |
3L | 28110227 | 3L | 18870044..18870353 | 1747..1438 | 1550 | 100 | Minus |
3L | 28110227 | 3L | 18872166..18872396 | 299..69 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 18871962..18872115 | 449..296 | 770 | 100 | Minus |
3L | 28110227 | 3L | 18870648..18870782 | 1438..1304 | 675 | 100 | Minus |
3L | 28110227 | 3L | 18872451..18872520 | 70..1 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18864096..18864953 | 1307..450 | 4290 | 100 | Minus |
3L | 28103327 | 3L | 18863144..18863453 | 1747..1438 | 1550 | 100 | Minus |
3L | 28103327 | 3L | 18865266..18865496 | 299..69 | 1155 | 100 | Minus |
3L | 28103327 | 3L | 18865062..18865215 | 449..296 | 770 | 100 | Minus |
3L | 28103327 | 3L | 18863748..18863882 | 1438..1304 | 675 | 100 | Minus |
3L | 28103327 | 3L | 18865551..18865620 | 70..1 | 350 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18859652..18859961 | 1439..1746 | 98 | <- | Minus |
chr3L | 18860257..18860389 | 1306..1438 | 100 | <- | Minus |
chr3L | 18860607..18861462 | 450..1305 | 99 | <- | Minus |
chr3L | 18861571..18861722 | 298..449 | 100 | <- | Minus |
chr3L | 18861777..18862003 | 71..297 | 99 | <- | Minus |
chr3L | 18862060..18862129 | 1..70 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 1..1371 | 37..1407 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 1..1371 | 37..1407 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 1..1371 | 37..1407 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 1..1371 | 37..1407 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 1..1371 | 37..1407 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 24..1769 | 1..1746 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 24..1769 | 1..1746 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 34..1779 | 1..1746 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 24..1769 | 1..1746 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad9-RA | 34..1779 | 1..1746 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18870045..18870352 | 1439..1746 | 100 | <- | Minus |
3L | 18870648..18870780 | 1306..1438 | 100 | <- | Minus |
3L | 18870998..18871853 | 450..1305 | 100 | <- | Minus |
3L | 18871962..18872113 | 298..449 | 100 | <- | Minus |
3L | 18872168..18872394 | 71..297 | 100 | <- | Minus |
3L | 18872451..18872520 | 1..70 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18870045..18870352 | 1439..1746 | 100 | <- | Minus |
3L | 18870648..18870780 | 1306..1438 | 100 | <- | Minus |
3L | 18870998..18871853 | 450..1305 | 100 | <- | Minus |
3L | 18871962..18872113 | 298..449 | 100 | <- | Minus |
3L | 18872168..18872394 | 71..297 | 100 | <- | Minus |
3L | 18872451..18872520 | 1..70 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18870045..18870352 | 1439..1746 | 100 | <- | Minus |
3L | 18870648..18870780 | 1306..1438 | 100 | <- | Minus |
3L | 18870998..18871853 | 450..1305 | 100 | <- | Minus |
3L | 18871962..18872113 | 298..449 | 100 | <- | Minus |
3L | 18872168..18872394 | 71..297 | 100 | <- | Minus |
3L | 18872451..18872520 | 1..70 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18865062..18865213 | 298..449 | 100 | <- | Minus |
arm_3L | 18865268..18865494 | 71..297 | 100 | <- | Minus |
arm_3L | 18865551..18865620 | 1..70 | 100 | Minus | |
arm_3L | 18863145..18863452 | 1439..1746 | 100 | <- | Minus |
arm_3L | 18863748..18863880 | 1306..1438 | 100 | <- | Minus |
arm_3L | 18864098..18864953 | 450..1305 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18863145..18863452 | 1439..1746 | 100 | <- | Minus |
3L | 18863748..18863880 | 1306..1438 | 100 | <- | Minus |
3L | 18864098..18864953 | 450..1305 | 100 | <- | Minus |
3L | 18865062..18865213 | 298..449 | 100 | <- | Minus |
3L | 18865268..18865494 | 71..297 | 100 | <- | Minus |
3L | 18865551..18865620 | 1..70 | 100 | Minus |
Translation from 0 to 1406
> LD10092.hyp NFATKNIVQILPMKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQM RAINATQSAVGSISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEV EYCELNLLDNQTNLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNI IRGDHKLLTDISNNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQ LKLKPSEFEQYQVTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMP FLLKIKKHGEIECLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKR KSSVSKPNVTNKRKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEA PSVQHPRILAEVDTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNST EVCFINTDDSQQPKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSR LKTMLRLDEHLISGYELL*
Translation from 36 to 1406
> LD10092.pep MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI SGYELL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10803-PA | 461 | GF10803-PA | 1..439 | 1..434 | 1642 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13449-PA | 456 | GG13449-PA | 1..456 | 1..456 | 2316 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16967-PA | 446 | GH16967-PA | 1..446 | 1..452 | 1345 | 59.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rad9-PA | 456 | CG3945-PA | 1..456 | 1..456 | 2304 | 100 | Plus |
Rad9-PB | 456 | CG3945-PB | 1..424 | 1..424 | 2146 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11831-PA | 444 | GI11831-PA | 1..406 | 1..420 | 1269 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21439-PA | 297 | GL21439-PA | 1..275 | 162..434 | 894 | 68.3 | Plus |
Dper\GL25252-PA | 326 | GL25252-PA | 78..304 | 210..434 | 647 | 63.2 | Plus |
Dper\GL25252-PA | 326 | GL25252-PA | 1..83 | 1..83 | 403 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17795-PA | 458 | GA17795-PA | 1..436 | 1..434 | 1698 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14917-PA | 434 | GM14917-PA | 1..411 | 1..433 | 2081 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12325-PA | 1005 | GD12325-PA | 1..424 | 1..424 | 2230 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13531-PA | 448 | GJ13531-PA | 1..410 | 1..420 | 1225 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20449-PA | 457 | GK20449-PA | 1..430 | 1..430 | 1236 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22551-PA | 456 | GE22551-PA | 1..456 | 1..456 | 2201 | 94.7 | Plus |