Clone LD10092 Report

Search the DGRC for LD10092

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:100
Well:92
Vector:pBS SK-
Associated Gene/TranscriptRad9-RA
Protein status:LD10092.pep: gold
Preliminary Size:1951
Sequenced Size:1765

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3945 2001-01-01 Release 2 assignment
CG3945 2001-10-10 Blastp of sequenced clone
CG3945 2003-01-01 Sim4 clustering to Release 3
Rad9 2008-04-29 Release 5.5 accounting
Rad9 2008-08-15 Release 5.9 accounting
Rad9 2008-12-18 5.12 accounting

Clone Sequence Records

LD10092.complete Sequence

1765 bp (1765 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061116

> LD10092.complete
AATTTCGCGACCAAAAACATAGTGCAAATATTGCCAATGAAATACACTTT
AGAGGGCAGCAATGCAAGAGTCATCGCCAAAGCCGTACAATCGCTGTCCA
AGGTGGGCAAGGAGATGTTCATCGAGATCGACCAGCAATCCTTGCAGATG
CGGGCCATAAATGCCACCCAATCCGCAGTGGGCAGCATATCGTTCAAAAG
ATCCATGTTCGAAGTGTATGACATGCCGCCGCACTCAGATTTCTACTGCA
AGATCTCCATGAAGGGATGTTTGGCCGTGTTCCGCAACATGAATGAGGTG
GAGTACTGTGAACTCAACTTGCTGGACAACCAGACCAACCTGCAGGTGAA
TCTCCGCTGTAAGCTGGAGACCACAAAGGAGGCCACCATTTCCATCATAG
ACGACCAAAACATTAACACAAACATTAACACCGATCAGATGCCGAATATA
ATCCGTGGCGATCACAAGCTGTTGACGGATATATCCAATAACTTTAACTC
CTCAGAGGAGGAACTTACTTTGGAGGCAAACTCGGGCAGTGTGGTGGCCA
AAAACTACATAGAAGGAGCCCGAGTTAATGATAAGTTCATGCGCACGCAG
CTGAAACTTAAGCCCAGTGAATTTGAGCAGTACCAGGTAACGAAGGAGAC
GGTCATTACATTCTGCATTAAGGAATTCCGAGCATTTCTCCTCTTCGCCG
AGTGCTTAAATGCTTCGCTGACCCTGGAGTTCGACGAAGCGGGCATGCCT
TTCCTGCTCAAAATTAAGAAGCATGGCGAGATTGAATGCTTGCTGATCAT
GTCCACGCTATCCCCCGATGATATAAGCTTCTCGGAAGATTATTGTCAAA
AGGATCTGACAGTGCAGGATGAGGATGTACGAGCGGCGGCCGCAAAGCGA
AAGAGCAGCGTTTCGAAGCCGAATGTGACCAACAAACGCAAAGGCAGCTC
TTCGGAACCGGCTGCAGTGCAGCCAAAACGGCGAGTTGAGGAGACCCAAT
TAGAATCGAGCCTAGATAATCCACTGTTTCAGTTCCGGGACTCGGAGGCG
CCATCTGTTCAGCACCCTCGCATCCTAGCCGAGGTGGACACTGTGGTTCT
GATTGAAGATGAGGCGGAACAAGAGGCTCTCATGCTGGCAGCCGCGGATG
CCGCTTTGGAGGCCAGCATGGCACCTGCTCCAGAGCCGCCGAACAGCACG
GAGGTTTGCTTTATCAACACAGACGACTCTCAACAACCTAAACCTGCGAA
AAGCTCCTCCGACGAGGACGAAACTATACCCCAGTCACCTGAGCGCCCTA
ACAAGGTCCTGGGCGTTCTTCTGGGCCTGCTGCAGGGATGTGTGAGCCGA
CTGAAGACTATGTTGCGACTTGATGAGCATTTGATCAGTGGTTACGAGCT
GCTTTGATGCACTCAACACAAAGCTGCGAGTGAAAGCGCTCCTCGTCGGA
TTCAGAAGCTTCACCGCTCACCAAATCAGCCATCATTCAGTTTATTAAAT
ACTATTGTAAACAATTTTTTATTTACTGCAGTTACGGCGCTGCCAGATCA
GTTAAAACTGCAAACTGTTGCTCACATGGGCGCAGTTGAAGGGGATATTC
TTATGTTTGTGATATCTATGCTAACAGATCCGTAGAACTACAATCATAAA
AATTATTAACGGATAATGAATGGTATTAGTAACACTTTGCCCATTACTCA
GAAGACGATGTAATCTCAATAAGCGCAAAACATAAATTTTAAAAGCAAAA
AAAAAAAAAAAAAAA

LD10092.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1791 Rad9-RA 45..1791 1..1747 8735 100 Plus
Rad9-RB 1454 Rad9-RB 45..1351 1..1307 6535 100 Plus
CG34255-RA 560 CG34255-RA 285..419 1438..1304 675 100 Minus
CG34255-RA 560 CG34255-RA 1..100 1537..1438 500 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18860605..18861462 1307..450 4215 99.4 Minus
chr3L 24539361 chr3L 18859652..18859962 1746..1438 1460 98.7 Minus
chr3L 24539361 chr3L 18861775..18862005 299..69 1140 99.6 Minus
chr3L 24539361 chr3L 18861571..18861724 449..296 770 100 Minus
chr3L 24539361 chr3L 18860257..18860391 1438..1304 675 100 Minus
chr3L 24539361 chr3L 18862060..18862129 70..1 335 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870996..18871853 1307..450 4290 100 Minus
3L 28110227 3L 18870044..18870353 1747..1438 1550 100 Minus
3L 28110227 3L 18872166..18872396 299..69 1155 100 Minus
3L 28110227 3L 18871962..18872115 449..296 770 100 Minus
3L 28110227 3L 18870648..18870782 1438..1304 675 100 Minus
3L 28110227 3L 18872451..18872520 70..1 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18864096..18864953 1307..450 4290 100 Minus
3L 28103327 3L 18863144..18863453 1747..1438 1550 100 Minus
3L 28103327 3L 18865266..18865496 299..69 1155 100 Minus
3L 28103327 3L 18865062..18865215 449..296 770 100 Minus
3L 28103327 3L 18863748..18863882 1438..1304 675 100 Minus
3L 28103327 3L 18865551..18865620 70..1 350 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:20:54 has no hits.

LD10092.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:21:44 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18859652..18859961 1439..1746 98 <- Minus
chr3L 18860257..18860389 1306..1438 100 <- Minus
chr3L 18860607..18861462 450..1305 99 <- Minus
chr3L 18861571..18861722 298..449 100 <- Minus
chr3L 18861777..18862003 71..297 99 <- Minus
chr3L 18862060..18862129 1..70 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:25 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 37..1407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:27 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 37..1407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:52:01 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 37..1407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:29 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 37..1407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:34 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 37..1407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:08 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 24..1769 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:27 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 24..1769 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:01 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 34..1779 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:29 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 24..1769 1..1746 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:34 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 34..1779 1..1746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:44 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18870045..18870352 1439..1746 100 <- Minus
3L 18870648..18870780 1306..1438 100 <- Minus
3L 18870998..18871853 450..1305 100 <- Minus
3L 18871962..18872113 298..449 100 <- Minus
3L 18872168..18872394 71..297 100 <- Minus
3L 18872451..18872520 1..70 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:44 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18870045..18870352 1439..1746 100 <- Minus
3L 18870648..18870780 1306..1438 100 <- Minus
3L 18870998..18871853 450..1305 100 <- Minus
3L 18871962..18872113 298..449 100 <- Minus
3L 18872168..18872394 71..297 100 <- Minus
3L 18872451..18872520 1..70 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:21:44 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18870045..18870352 1439..1746 100 <- Minus
3L 18870648..18870780 1306..1438 100 <- Minus
3L 18870998..18871853 450..1305 100 <- Minus
3L 18871962..18872113 298..449 100 <- Minus
3L 18872168..18872394 71..297 100 <- Minus
3L 18872451..18872520 1..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:01 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18865062..18865213 298..449 100 <- Minus
arm_3L 18865268..18865494 71..297 100 <- Minus
arm_3L 18865551..18865620 1..70 100   Minus
arm_3L 18863145..18863452 1439..1746 100 <- Minus
arm_3L 18863748..18863880 1306..1438 100 <- Minus
arm_3L 18864098..18864953 450..1305 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:34 Download gff for LD10092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18863145..18863452 1439..1746 100 <- Minus
3L 18863748..18863880 1306..1438 100 <- Minus
3L 18864098..18864953 450..1305 100 <- Minus
3L 18865062..18865213 298..449 100 <- Minus
3L 18865268..18865494 71..297 100 <- Minus
3L 18865551..18865620 1..70 100   Minus

LD10092.hyp Sequence

Translation from 0 to 1406

> LD10092.hyp
NFATKNIVQILPMKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQM
RAINATQSAVGSISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEV
EYCELNLLDNQTNLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNI
IRGDHKLLTDISNNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQ
LKLKPSEFEQYQVTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMP
FLLKIKKHGEIECLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKR
KSSVSKPNVTNKRKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEA
PSVQHPRILAEVDTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNST
EVCFINTDDSQQPKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSR
LKTMLRLDEHLISGYELL*

LD10092.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-PA 456 CG3945-PA 1..456 13..468 2304 100 Plus
Rad9-PB 456 CG3945-PB 1..424 13..436 2146 100 Plus

LD10092.pep Sequence

Translation from 36 to 1406

> LD10092.pep
MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS
ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT
NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS
NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ
VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE
CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK
RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV
DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ
PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI
SGYELL*

LD10092.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10803-PA 461 GF10803-PA 1..439 1..434 1642 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13449-PA 456 GG13449-PA 1..456 1..456 2316 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16967-PA 446 GH16967-PA 1..446 1..452 1345 59.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-PA 456 CG3945-PA 1..456 1..456 2304 100 Plus
Rad9-PB 456 CG3945-PB 1..424 1..424 2146 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11831-PA 444 GI11831-PA 1..406 1..420 1269 61 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21439-PA 297 GL21439-PA 1..275 162..434 894 68.3 Plus
Dper\GL25252-PA 326 GL25252-PA 78..304 210..434 647 63.2 Plus
Dper\GL25252-PA 326 GL25252-PA 1..83 1..83 403 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17795-PA 458 GA17795-PA 1..436 1..434 1698 77 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14917-PA 434 GM14917-PA 1..411 1..433 2081 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12325-PA 1005 GD12325-PA 1..424 1..424 2230 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13531-PA 448 GJ13531-PA 1..410 1..420 1225 60.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20449-PA 457 GK20449-PA 1..430 1..430 1236 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22551-PA 456 GE22551-PA 1..456 1..456 2201 94.7 Plus