Clone LD10135 Report

Search the DGRC for LD10135

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:101
Well:35
Vector:pBS SK-
Associated Gene/TranscriptA16-RA
Protein status:LD10135.pep: gold
Preliminary Size:1352
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9933 2002-01-01 Sim4 clustering to Release 2
CG9933 2002-06-13 Blastp of sequenced clone
CG9933 2003-01-01 Sim4 clustering to Release 3
A16 2008-04-29 Release 5.5 accounting
A16 2008-08-15 Release 5.9 accounting
A16 2008-12-18 5.12 accounting

Clone Sequence Records

LD10135.complete Sequence

1389 bp (1389 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122156

> LD10135.complete
AGAAAGCCGTTTTGTTGAAAGATTACAAATGAATTGCGATGCATTTAGCT
AAAATTGAACTTTAGCAGAGCCGCAAAACGATAGAGAGCCAACGCAGAGA
ACACGGAGCCACCCAAACACATGGATACCAAGTCCAATGATGACTCGGCT
GGCAGTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGA
GACAACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACT
GCAGCAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATG
GAGGGAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTC
GTGCGGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATC
CGGCCAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTC
AAGCTTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGG
CGCCTCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTA
GTAGCATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCC
ACCCCCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGT
ACGCTTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAA
GAAAGCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCT
AACTGTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGA
TGAGCAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCG
AGGCGGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTC
GAACAGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATAT
GCTAAACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAGGACT
TCTTCAGACGCATCAAGCCCGAGAATGGCATTGAACGCATTCTGGGCAAG
GAGACCAAGGCGGGAAAGGTTGAATTCCTTCTGCGCTACGAGAACCAAGG
CGGACTCTTCTGGCAATCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGC
TGCTCAAGGCCTACGAAATGAATCGAGAACGACGTCAGCAGCGCTTGATG
CATCACGTTGCCAAAAGGCAGAGTCTGCGACAGCGATACACGGATTTCTA
GTAGCGGTTACTTAGGTATTAGGTTCATAATTAGGTTCCACATAATTGTA
ACATTTTTGTAAAATGAAGTAAATGATTTTCTTTTGTTGAACAAAAATAA
CTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD10135.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1450 A16-RA 93..1447 1..1355 6775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13018909..13019978 1070..1 5275 99.5 Minus
chr2L 23010047 chr2L 13018252..13018410 1355..1197 795 100 Minus
chr2L 23010047 chr2L 13018478..13018608 1197..1067 655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13021298 1070..1 5350 100 Minus
2L 23513712 2L 13019572..13019730 1355..1197 795 100 Minus
2L 23513712 2L 13019798..13019928 1197..1067 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13021298 1070..1 5350 100 Minus
2L 23513712 2L 13019572..13019730 1355..1197 795 100 Minus
2L 23513712 2L 13019798..13019928 1197..1067 655 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:23:23 has no hits.

LD10135.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:24:06 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13018250..13018409 1198..1357 98 <- Minus
chr2L 13018478..13018606 1069..1197 100 <- Minus
chr2L 13018911..13019978 1..1068 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:28 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 121..1251 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:38 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 121..1251 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:48 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 121..1251 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:28 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 121..1251 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:29:35 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 1..1131 121..1251 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:52 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 10..1364 1..1357 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:38 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 10..1361 1..1352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:48 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 15..1366 1..1352 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:28 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 10..1364 1..1357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:29:35 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 15..1366 1..1352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:06 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13019570..13019729 1198..1357 98 <- Minus
2L 13019798..13019926 1069..1197 100 <- Minus
2L 13020231..13021298 1..1068 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:06 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13019570..13019729 1198..1357 98 <- Minus
2L 13019798..13019926 1069..1197 100 <- Minus
2L 13020231..13021298 1..1068 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:06 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13019570..13019729 1198..1357 98 <- Minus
2L 13019798..13019926 1069..1197 100 <- Minus
2L 13020231..13021298 1..1068 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:48 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13019570..13019729 1198..1357 98 <- Minus
arm_2L 13019798..13019926 1069..1197 100 <- Minus
arm_2L 13020231..13021298 1..1068 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:09 Download gff for LD10135.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13020231..13021298 1..1068 100   Minus
2L 13019570..13019729 1198..1357 98 <- Minus
2L 13019798..13019926 1069..1197 100 <- Minus

LD10135.hyp Sequence

Translation from 120 to 1250

> LD10135.hyp
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDF*

LD10135.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
A16-PA 376 CG9933-PA 1..376 1..376 1938 100 Plus

LD10135.pep Sequence

Translation from 120 to 1250

> LD10135.pep
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDF*

LD10135.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15649-PA 367 GF15649-PA 3..367 1..376 933 58.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10231-PA 376 GG10231-PA 1..376 1..376 1618 88.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10348-PA 346 GH10348-PA 1..346 1..376 821 53.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
A16-PA 376 CG9933-PA 1..376 1..376 1938 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21215-PA 346 GI21215-PA 1..346 1..376 962 58 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24779-PA 381 GL24779-PA 1..381 1..376 968 57.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22135-PA 381 GA22135-PA 1..381 1..376 977 57.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25921-PA 376 GM25921-PA 1..376 1..376 1974 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22091-PA 100 GD22091-PA 1..100 277..376 502 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11047-PA 347 GJ11047-PA 1..347 1..376 913 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14813-PA 362 GK14813-PA 1..362 1..376 861 51.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11956-PA 380 GE11956-PA 1..380 1..376 1684 92.6 Plus