BDGP Sequence Production Resources |
Search the DGRC for LD10153
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 101 |
Well: | 53 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rad23-RA |
Protein status: | LD10153.pep: gold |
Preliminary Size: | 1477 |
Sequenced Size: | 1479 |
Gene | Date | Evidence |
---|---|---|
CG1836 | 2000-02-14 | Blastp of sequenced clone |
CG1836 | 2001-01-01 | Release 2 assignment |
CG1836 | 2003-01-01 | Sim4 clustering to Release 3 |
Rad23 | 2008-04-29 | Release 5.5 accounting |
Rad23 | 2008-08-15 | Release 5.9 accounting |
Rad23 | 2008-12-18 | 5.12 accounting |
1479 bp (1479 high quality bases) assembled on 2000-02-14
GenBank Submission: AF132147
> LD10153.complete AAATCGTTTTTATCAAGCGATATTGGGAACTAACTTTCGAGTTTGCATAT GTGTATGCATATGTATATTTAATTAAGTTTTGGTTTTGTCTGATACACAA GATGATTATTACAATTAAAAATCTTCAACAGCAAACTTTTACTATTGAGT TTGCCCCGGAAAAAACGGTTTTGGAACTGAAGAAGAAAATATTCGAGGAG CGCGGTCCAGAGTACGTCGCCGAAAAACAAAAACTGATCTACGCTGGCGT CATATTGACGGATGACCGCACCGTTGGTTCATACAACGTTGATGAAAAAA AGTTCATTGTGGTAATGTTGACACGCGATTCGTCTAGTTCAAATCGTAAT CAACTTAGTGTAAAAGAAAGTAATAAATTGACTAGCACCGACGATTCAAA GCAATCTATGCCTTGCGAAGAAGCCAACCATACCAATTCGCCTAGTTCCA CAAATACAGAAGATTCAGTTTTATCACGTGAAACCAGACCTTTATCTAGT GACGAATTGATTGGCGAGTTGGCCCAGGCTTCCTTACAATCGCGCGCTGA ATCTAATTTGCTTATGGGTGACGAATACAACCAAACAGTCCTATCAATGG TGGAAATGGGTTACCCAAGAGAGCAGGTTGAACGTGCGATGGCTGCTAGT TATAACAACCCGGAAAGAGCCGTTGAATATCTCATTAATGGCATACCTGC AGAGGAAGGTACTTTTTACAATAGGCTGAATGAATCAACGAATCCTAGTC TAATCCCCTCCGGACCGCAACCTGCGTCGGCAACCTCTGCCGAGCGTTCA ACAGAATCAAATTCAGACCCCTTTGAATTTTTACGTAGCCAGCCACAGTT TCTTCAAATGCGATCTTTAATTTATCAAAACCCTCATCTTTTGCATGCAG TATTGCAGCAGATTGGTCAGACAAACCCAGCCCTTTTACAACTTATTTCG GAGAACCAAGATGCGTTTCTCAATATGCTTAATCAACCGATTGACCGCGA ATCGGAGTCAGGCGCCACCGTTCCTCCCGTTTCGAATGCGCGGATTCCTT CAACTTTGGACAATGTTGACCTCTTTTCTCCAGATTTAGAAGTAGCTACT TCAGCACAAAGATCAGCCGCGGGTACAAGTGCAGCACATCAAAGCGGTAG CGCAGCGGATAACGAAGACTTGGAACAACCTTTAGGAGTATCAACCATTC GTTTAAATCGCCAAGATAAGGACGCAATAGAACGGCTAAAAGCTCTTGGA TTCCCAGAGGCCCTTGTACTGCAAGCGTACTTCGCTTGTGAAAAGAACGA GGAACAAGCAGCTAATTTTTTGCTATCGTCTAGCTTCGATGATTAGGATG ACAAAATGTAAGAAGTTATGCAAATAACACCGGAAGCGTTACATTTAAAG TTAGATGTTCTTAAATTAAATGTAAAATGTCGATCATAAAAATTCTTTTA TATTCTTTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rad23.c | 1633 | Rad23.c | 246..1544 | 163..1461 | 6480 | 99.9 | Plus |
Rad23-RB | 1594 | Rad23-RB | 207..1505 | 163..1461 | 6480 | 99.9 | Plus |
Rad23.b | 1597 | Rad23.b | 210..1508 | 163..1461 | 6480 | 99.9 | Plus |
Rad23.c | 1633 | Rad23.c | 27..195 | 1..169 | 845 | 100 | Plus |
Rad23-RB | 1594 | Rad23-RB | 27..194 | 1..168 | 840 | 100 | Plus |
Rad23.b | 1597 | Rad23.b | 27..193 | 1..167 | 835 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 328991..329644 | 163..816 | 3255 | 99.8 | Plus |
chr4 | 1351717 | chr4 | 330257..330582 | 910..1235 | 1630 | 100 | Plus |
chr4 | 1351717 | chr4 | 330643..330867 | 1235..1459 | 1125 | 100 | Plus |
chr4 | 1351717 | chr4 | 328688..328856 | 1..169 | 845 | 100 | Plus |
chr4 | 1351717 | chr4 | 330099..330198 | 812..911 | 500 | 100 | Plus |
chr4 | 1351717 | chr4 | 326859..326913 | 87..141 | 215 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 308426..309079 | 163..816 | 3255 | 99.8 | Plus |
4 | 1348131 | 4 | 309692..310017 | 910..1235 | 1630 | 100 | Plus |
4 | 1348131 | 4 | 310078..310304 | 1235..1461 | 1135 | 100 | Plus |
4 | 1348131 | 4 | 308123..308291 | 1..169 | 845 | 100 | Plus |
4 | 1348131 | 4 | 309534..309633 | 812..911 | 500 | 100 | Plus |
4 | 1348131 | 4 | 306297..306351 | 87..141 | 215 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 308426..309079 | 163..816 | 3255 | 99.8 | Plus |
4 | 1331231 | 4 | 309692..310017 | 910..1235 | 1630 | 100 | Plus |
4 | 1331231 | 4 | 310078..310304 | 1235..1461 | 1135 | 100 | Plus |
4 | 1331231 | 4 | 308123..308291 | 1..169 | 845 | 100 | Plus |
4 | 1331231 | 4 | 309534..309633 | 812..911 | 500 | 100 | Plus |
4 | 1331231 | 4 | 306297..306351 | 87..141 | 215 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 5001..5082 | 84..7 | 113 | 62.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 328688..328854 | 1..167 | 100 | -> | Plus |
chr4 | 328996..329644 | 168..816 | 100 | -> | Plus |
chr4 | 330104..330198 | 817..911 | 100 | -> | Plus |
chr4 | 330259..330582 | 912..1235 | 100 | -> | Plus |
chr4 | 330644..330867 | 1236..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 1..1245 | 102..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 1..1245 | 102..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 1..1245 | 102..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 1..1245 | 102..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 1..1245 | 102..1346 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 17..1475 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 17..1475 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 31..1489 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 17..1475 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rad23-RA | 31..1489 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 310079..310302 | 1236..1459 | 100 | Plus | |
4 | 308123..308289 | 1..167 | 100 | -> | Plus |
4 | 308431..309079 | 168..816 | 100 | -> | Plus |
4 | 309539..309633 | 817..911 | 100 | -> | Plus |
4 | 309694..310017 | 912..1235 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 310079..310302 | 1236..1459 | 100 | Plus | |
4 | 308123..308289 | 1..167 | 100 | -> | Plus |
4 | 308431..309079 | 168..816 | 100 | -> | Plus |
4 | 309539..309633 | 817..911 | 100 | -> | Plus |
4 | 309694..310017 | 912..1235 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 310079..310302 | 1236..1459 | 100 | Plus | |
4 | 308123..308289 | 1..167 | 100 | -> | Plus |
4 | 308431..309079 | 168..816 | 100 | -> | Plus |
4 | 309539..309633 | 817..911 | 100 | -> | Plus |
4 | 309694..310017 | 912..1235 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 328749..328915 | 1..167 | 100 | -> | Plus |
arm_4 | 329057..329705 | 168..816 | 100 | -> | Plus |
arm_4 | 330165..330259 | 817..911 | 100 | -> | Plus |
arm_4 | 330320..330643 | 912..1235 | 100 | -> | Plus |
arm_4 | 330705..330928 | 1236..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 308431..309079 | 168..816 | 100 | -> | Plus |
4 | 309539..309633 | 817..911 | 100 | -> | Plus |
4 | 309694..310017 | 912..1235 | 100 | -> | Plus |
4 | 310079..310302 | 1236..1459 | 100 | Plus | |
4 | 308123..308289 | 1..167 | 100 | -> | Plus |
Translation from 2 to 1345
> LD10153.hyp IVFIKRYWELTFEFAYVYAYVYLIKFWFCLIHKMIITIKNLQQQTFTIEF APEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDEKK FIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMV EMGYPREQVERAMAASYNNPERAVEYLINGIPAEEGTFYNRLNESTNPSL IPSGPQPASATSAERSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAV LQQIGQTNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPS TLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIR LNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLSSSFDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rad23-PC | 414 | CG1836-PC | 1..414 | 34..447 | 2071 | 100 | Plus |
Rad23-PA | 414 | CG1836-PA | 1..414 | 34..447 | 2071 | 100 | Plus |
Rad23-PB | 343 | CG1836-PB | 1..343 | 105..447 | 1718 | 100 | Plus |
CG10694-PA | 290 | CG10694-PA | 1..288 | 34..447 | 293 | 24.9 | Plus |
Translation from 101 to 1345
> LD10153.pep MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGV ILTDDRTVGSYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSK QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAE SNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLINGIPA EEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQPQF LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRE SESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGS AADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNE EQAANFLLSSSFDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19257-PA | 405 | GF19257-PA | 1..405 | 1..414 | 1300 | 64.8 | Plus |
Dana\GF23005-PA | 318 | GF23005-PA | 1..317 | 1..414 | 346 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16385-PA | 414 | GG16385-PA | 1..414 | 1..414 | 1818 | 85.8 | Plus |
Dere\GG11252-PA | 297 | GG11252-PA | 1..294 | 1..414 | 287 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23932-PA | 470 | GH23932-PA | 1..470 | 1..414 | 862 | 46.8 | Plus |
Dgri\GH18491-PA | 282 | GH18491-PA | 111..229 | 161..296 | 224 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rad23-PC | 414 | CG1836-PC | 1..414 | 1..414 | 2071 | 100 | Plus |
Rad23-PA | 414 | CG1836-PA | 1..414 | 1..414 | 2071 | 100 | Plus |
Rad23-PB | 343 | CG1836-PB | 1..343 | 72..414 | 1718 | 100 | Plus |
CG10694-PA | 290 | CG10694-PA | 1..288 | 1..414 | 293 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14087-PA | 442 | GI14087-PA | 1..442 | 1..414 | 1141 | 56.7 | Plus |
Dmoj\GI24165-PA | 299 | GI24165-PA | 1..245 | 1..297 | 302 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18167-PA | 430 | GL18167-PA | 1..430 | 1..414 | 1276 | 62.9 | Plus |
Dper\GL23402-PA | 314 | GL23402-PA | 1..313 | 1..414 | 281 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14903-PA | 430 | GA14903-PA | 1..430 | 1..414 | 1276 | 62.9 | Plus |
Dpse\GA10501-PA | 313 | GA10501-PA | 1..312 | 1..414 | 285 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26792-PA | 414 | GM26792-PA | 1..414 | 1..414 | 2024 | 93.7 | Plus |
Dsec\GM26556-PA | 288 | GM26556-PA | 1..286 | 1..414 | 275 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Rad23-PA | 110 | GD24402-PA | 1..101 | 1..101 | 475 | 91.1 | Plus |
Dsim\GD21063-PA | 288 | GD21063-PA | 1..286 | 1..414 | 278 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16257-PA | 448 | GJ16257-PA | 1..448 | 1..414 | 1172 | 57.5 | Plus |
Dvir\GJ14198-PA | 290 | GJ14198-PA | 112..282 | 161..408 | 270 | 29.8 | Plus |