Clone LD10183 Report

Search the DGRC for LD10183

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:101
Well:83
Vector:pBS SK-
Associated Gene/TranscriptCG31457-RB
Protein status:LD10183.pep: gold
Preliminary Size:1521
Sequenced Size:1339

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4639 2001-01-01 Release 2 assignment
CG31457 2001-11-09 Blastp of sequenced clone
CG31457 2003-01-01 Sim4 clustering to Release 3
CG31457 2008-04-29 Release 5.5 accounting
CG31457 2008-08-15 Release 5.9 accounting
CG31457 2008-12-18 5.12 accounting

Clone Sequence Records

LD10183.complete Sequence

1339 bp (1339 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069400

> LD10183.complete
TTGATGTTTCCTAGTAGGAAATTCCTCCGCTTCCAATTTTAGTTATTTGT
CTTCAAATGTTTTTTTGTTTCATATTCTAAACTGGTTGCTTGGAAAGATT
GCTAGATTGTCCATCATTCCGAATCGTGCCTAATCAGGTGTCCGGCTGCC
ACGCTCCGAATTGCCTTGAAATTCAACATGAATGTTTGTCGCCTGTGCTT
GTCGAAGGAACCCAATTTCCCCGTTTTCGGTGCAAATGGATCGACTGCTC
TGCAGATAATGGTCTGCACATCGCTGGAGATCGAGCCCGGCGACGGTCTG
CCACAGCACATATGCACCATGTGTCGGCTGCAACTGGAGGAGATGCACTG
CTTCCGACGACGCTGCCTCGCAGCCGATCGCAAATTGAGGCGCCACAAGG
CGTTGCAGCGGCAGGGTGTCAAGTCGCAGCTGAGTGAAGTGGAGGAGGAG
CGGGGCTCCGGGGAAGGATGCACGCAAACTGGCTGCGCCGAGAACAATGC
CCAGTGGCGCCAGCAGGCCGCCCAGCTCATTAGCAGCGAGATCGACGCGT
ATAAAAAGGAGCTGCTCAGCACTTGCAAGCAAGCTGTGCGGGCGGAAATC
GAGCTGGAGCTGCGGGCGGAACTCGAAGAGGTCATCATACCCGAAGCCAA
GCAGCAGTTGCGACTGAGCGTTCTTGACGACGTGTTTGTCGAACTGGAAC
GGTACTTTGTGCGCAAGCGCAATGAGGCGACCTATGAGATGAAGATGAAC
TTAAGCAGTCCGCTGCCTGACGAACAGACCGCTGGCTTCTACGAAACAGA
CATGGGCCAGGAGCTAAGGGAGCAGAGCGATAACAGCGTGGTGGAGTTAC
TGGACGATGAACCAGAAGCCAGCAGACAGCCAGCTGCAACGCCACTAGTT
GCTGTGCCCATGGTTGAGATCAACATGAACGACCCGCAGCTGAGTCATCT
GCGCAACGACTATAGCAAGGACACCTTTCTGGGTGCCAACACAACTGCCT
TAGAGGATGTAAAAACCCCATCGCCGTGTCGAAAGAAAGTGCGCTTTATG
AGCCCCAAGCAGACGACCGATAACCTGTGCCGAAAGCACAGTTCCTTCAA
GACAAAATGCAGCAGTTCGTACGCCGATTTCAAAAGTTGTGTGCGCTGTC
GTCTAAGAGGAGCGGATAAGCTAAATAACACCGTGACGTAGCCACGTAAC
AACGAATTTAGTTTAATCCTCTATATTATAAGAATAGTACCTTTTTTTGT
GCACGCATATTTGACTAAGCCATCACCTATTTTAATTGTCATTGTATTCT
ATTAAACTTTAAATATGCAAAAAAAAAAAAAAAAAAAAA

LD10183.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-RB 1422 CG31457-RB 28..1346 1..1319 6580 99.9 Plus
hh-RA 3227 hh-RA 2835..3227 1..393 1965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18950524..18951376 853..1 4250 99.9 Minus
chr3R 27901430 chr3R 18950000..18950465 1318..853 2330 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23127105..23127957 853..1 4250 99.9 Minus
3R 32079331 3R 23126580..23127046 1319..853 2335 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22867936..22868788 853..1 4250 99.8 Minus
3R 31820162 3R 22867411..22867877 1319..853 2335 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:16:35 has no hits.

LD10183.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:36 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18950000..18950464 854..1318 100 <- Minus
chr3R 18950524..18951376 1..853 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:31 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 178..1191 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:51 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 178..1191 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:09 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 178..1191 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:27 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 178..1191 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:54 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 1..1014 178..1191 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:33 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 28..1345 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:51 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 28..1345 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:09 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 25..1342 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:27 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 28..1345 1..1318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:54 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
CG31457-RB 25..1342 1..1318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:36 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23126581..23127045 854..1318 100 <- Minus
3R 23127105..23127957 1..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:36 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23126581..23127045 854..1318 100 <- Minus
3R 23127105..23127957 1..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:36 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23126581..23127045 854..1318 100 <- Minus
3R 23127105..23127957 1..853 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:09 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18952303..18952767 854..1318 100 <- Minus
arm_3R 18952827..18953679 1..853 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:46 Download gff for LD10183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22867412..22867876 854..1318 100 <- Minus
3R 22867936..22868788 1..853 99   Minus

LD10183.pep Sequence

Translation from 177 to 1190

> LD10183.pep
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVT*

LD10183.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18030-PA 336 GF18030-PA 1..336 1..337 676 48.3 Plus
Dana\GF18031-PA 634 GF18031-PA 12..282 2..275 183 24.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12459-PA 335 GG12459-PA 1..335 1..337 1330 77.9 Plus
Dere\GG12460-PA 640 GG12460-PA 13..233 3..212 176 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23860-PA 379 GH23860-PA 5..379 4..333 543 37.8 Plus
Dgri\GH23864-PA 632 GH23864-PA 15..208 4..182 203 30.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 337 CG31457-PB 1..337 1..337 1751 100 Plus
CG31365-PA 639 CG31365-PA 13..286 3..272 187 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24575-PA 328 GI24575-PA 4..320 3..329 564 39.9 Plus
Dmoj\GI24576-PA 638 GI24576-PA 15..232 4..223 186 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13825-PA 371 GL13825-PA 2..366 1..337 666 45.2 Plus
Dper\GL13826-PA 635 GL13826-PA 14..235 3..202 203 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16262-PA 362 GA16262-PA 2..360 1..331 663 45.9 Plus
Dpse\GA16212-PA 635 GA16212-PA 14..231 3..198 201 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23590-PA 340 GM23590-PA 1..340 1..337 1571 90.3 Plus
Dsec\GM23591-PA 640 GM23591-PA 13..286 3..272 164 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18404-PA 340 GD18404-PA 1..340 1..337 1580 90.6 Plus
Dsim\GD18405-PA 640 GD18405-PA 13..222 3..181 162 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22642-PA 401 GJ22642-PA 2..394 1..329 544 35.2 Plus
Dvir\GJ22643-PA 636 GJ22643-PA 15..208 4..181 177 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12834-PA 341 GK12834-PA 1..341 1..337 567 41.1 Plus
Dwil\GK12835-PA 595 GK12835-PA 15..254 3..228 195 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23982-PA 337 GE23982-PA 1..337 1..337 1320 78.2 Plus
Dyak\GE23983-PA 640 GE23983-PA 13..222 3..181 169 28.1 Plus

LD10183.hyp Sequence

Translation from 177 to 1190

> LD10183.hyp
MNVCRLCLSKEPNFPVFGANGSTALQIMVCTSLEIEPGDGLPQHICTMCR
LQLEEMHCFRRRCLAADRKLRRHKALQRQGVKSQLSEVEEERGSGEGCTQ
TGCAENNAQWRQQAAQLISSEIDAYKKELLSTCKQAVRAEIELELRAELE
EVIIPEAKQQLRLSVLDDVFVELERYFVRKRNEATYEMKMNLSSPLPDEQ
TAGFYETDMGQELREQSDNSVVELLDDEPEASRQPAATPLVAVPMVEINM
NDPQLSHLRNDYSKDTFLGANTTALEDVKTPSPCRKKVRFMSPKQTTDNL
CRKHSSFKTKCSSSYADFKSCVRCRLRGADKLNNTVT*

LD10183.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31457-PB 337 CG31457-PB 1..337 1..337 1751 100 Plus
CG31365-PA 639 CG31365-PA 13..286 3..272 187 25.7 Plus