Clone LD10242 Report

Search the DGRC for LD10242

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:102
Well:42
Vector:pBS SK-
Associated Gene/Transcriptisopeptidase-T-3-RA
Protein status:LD10242.pep: gold
Preliminary Size:2562
Sequenced Size:2404

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11025 2001-01-01 Release 2 assignment
CG11025 2003-01-01 Sim4 clustering to Release 3
CG11025 2003-02-27 Blastp of sequenced clone
isopeptidase-T-3 2008-04-29 Release 5.5 accounting
isopeptidase-T-3 2008-08-15 Release 5.9 accounting
isopeptidase-T-3 2008-12-18 5.12 accounting

Clone Sequence Records

LD10242.complete Sequence

2404 bp (2404 high quality bases) assembled on 2003-02-27

GenBank Submission: BT004899

> LD10242.complete
AAAAGTGCCGCAAAATGTAACAAACACCTAGCTGCAGACCCAAGATGATA
CCCTGGATGCGGGAGAAGTTCAACGAGAAACGGGCCAAGTGGTTGGCGCG
TAGCAAGCGCAGCGGTGGTTCTCCGGCTGACGAAAGCCCTCGGAGCAGCA
GTCATAGCCACAGCCAGCGGACAGACGCCAGCGATGCGGAGAGCCTGAGC
GGATCCTCGTTGAATGTCCACACGGCGGAATCTGAAACGCAGACGGATGG
CGGGATATCCGCTTCCAATTCGCGGCCCCTTGTGGGCGGGGGCAGTTGCG
TCCTAAGGACTCCATCGCCCGCTCGCCGACGTCGCATTCACCTTGAGCTA
CAGCTGCAGCGACGAGAGGAACGTGCTGAGCATCAGAAGGTGGTGCCACA
GGACTCGCCCACGCCCACTCACCAACAGCAGGCTAATGCGAAATCAGCCC
ATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGATGCCAGC
AGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTCTCGGGT
TCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGAAGAGTG
AGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTATTTGCC
CCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGCGGAATA
CTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAAAAGTTC
GCAACAATGAGACTTTCATACTCTCCCCACGACGCAATACTCTGCCGCAG
ACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCTGGTGGA
GAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCACCATCG
ATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTGCGAAAG
GTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGCTGGCCC
TTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCAATCGCC
GAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGCTTCAAG
CGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTACTCGAC
CACGATGGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCACAGGAAC
CGCCGGGCATGAATATGCAGCACAGTCTATCTTCCATCTCACCCTCCACG
ATTGTCACCAATAATGAAACCATTGAAAACACTGCTGCCTTGATTGAGAT
TGTACGAATCTACAGCCACCGGGATTCCCCTCCCAGCGATGAGATTGTGG
AATCGCTTACAGAAATGGGCTTCGAGGAGACGGCAGTGCTCGCGGCACTG
AAGAAAACTGGCAACAACAAGGCGTCCGCGTGCGAATGGTTGTGCGACAA
TCGATCGGGTAGCGTTATTGAACTGCGTGAAGGCTTGGCGCCCGATTCGC
CCATCCTAAAGGTGATCCTGGAAATGCCACAAGTCCAGATGACCCTAAGC
AATCCAAAGACTTTTTTGGCATTTCTGGGCATCCTGGAAAACGAACATGC
GATACGCGTGTGGCGTGGCGACAACGACACAACCTCGGTCATCACACATA
TCCTTCAAAAGTACCATGAGGAGAAGCATGTGCTTGGCATCAATCAGTTC
TATACGAACCGCTGGTGAAAGATGCCGCTAAGTGGCTTTACTATGAGATT
AACCAAATTATATTTATACATATACATACACAATCACACACCCGAAGTGC
ATGGCTGTAGCTTGGTCCATTTTGGGGCTCTAATTATACATTGTGTATGT
GCCCGTATGTAAAGAGTATTTTTGTAGCCAAAAACCATGAAAGTAAACTG
CACAAAGCCAAAAGATGCAATCGCTTCGCCAAGAGCACGCGGCTGCACTC
TACAAACGCTTACCGATCAGTACGAATTGCATTTTATACATACATATACA
TATATATACATACATACACATATATATACATACATACATATATATATATA
TATATATATATATATAAATATAAAATGTATCTATATCTAGTCAGGCCTTC
ATCCTACAATTGTATTAGGTTAAACAATAATTACTCTATTCATCTAGTTT
GCTAGCTCATCTTCAGCCGAATCTCGCACTACATTTAGAAAATGTCACAT
ACTGCATCCCACAGAAACAACCCATCAGTTTATAAGCGCTCGTACGTGTG
GTGATTTAAGTGCGTTGTAATCCCAGGTTGTTTAAACCATCAACTTGAAC
TCAAAGTATTATTTTGTAAACCAAATATTCAAATTTGCATAGTTTTAACA
AAATGCAAATAAATCAATTAGTTTTTGATACAAAACAAAAAAAAAAAAAA
AAAA

LD10242.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RA 2560 isopeptidase-T-3-RA 170..2559 1..2390 11950 100 Plus
isopeptidase-T-3.b 2660 isopeptidase-T-3.b 714..2660 440..2386 9735 100 Plus
isopeptidase-T-3.a 2490 isopeptidase-T-3.a 544..2490 440..2386 9735 100 Plus
isopeptidase-T-3.b 2660 isopeptidase-T-3.b 129..568 1..440 2200 100 Plus
isopeptidase-T-3.a 2490 isopeptidase-T-3.a 93..531 1..439 2195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15559905..15560722 1569..2386 4060 99.8 Plus
chr2R 21145070 chr2R 15558606..15559095 440..929 2420 99.6 Plus
chr2R 21145070 chr2R 15557955..15558394 1..440 2185 99.8 Plus
chr2R 21145070 chr2R 15559151..15559487 930..1266 1685 100 Plus
chr2R 21145070 chr2R 15559539..15559842 1266..1569 1475 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19672660..19673481 1569..2390 4110 100 Plus
2R 25286936 2R 19671361..19671850 440..929 2450 100 Plus
2R 25286936 2R 19670711..19671150 1..440 2200 100 Plus
2R 25286936 2R 19671906..19672242 930..1266 1685 100 Plus
2R 25286936 2R 19672294..19672597 1266..1569 1520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19673859..19674680 1569..2390 4110 100 Plus
2R 25260384 2R 19672560..19673049 440..929 2450 100 Plus
2R 25260384 2R 19671910..19672349 1..440 2200 100 Plus
2R 25260384 2R 19673105..19673441 930..1266 1685 100 Plus
2R 25260384 2R 19673493..19673796 1266..1569 1520 100 Plus
Blast to na_te.dros performed 2019-03-16 15:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Circe 7450 Circe CIRC 7450bp 4186..4256 1773..1843 121 63.4 Plus

LD10242.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:11:01 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15557955..15558393 1..439 99 -> Plus
chr2R 15558606..15559095 440..929 99 -> Plus
chr2R 15559151..15559486 930..1265 100 -> Plus
chr2R 15559539..15559842 1266..1569 99 -> Plus
chr2R 15559906..15560320 1570..1984 100 == Plus
chr2R 15560409..15560722 2073..2386 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:33 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 45..1718 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:47:31 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 45..1718 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:13 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 45..1718 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:54 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 45..1718 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:57 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 45..1718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:59:27 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 93..2478 1..2386 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:47:31 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 93..2478 1..2386 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:13 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 94..2479 1..2386 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:54 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 93..2478 1..2386 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:57 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 94..2479 1..2386 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:01 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19670711..19671149 1..439 100 -> Plus
2R 19671361..19671850 440..929 100 -> Plus
2R 19671906..19672241 930..1265 100 -> Plus
2R 19672294..19672597 1266..1569 100 -> Plus
2R 19672661..19673477 1570..2386 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:01 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19670711..19671149 1..439 100 -> Plus
2R 19671361..19671850 440..929 100 -> Plus
2R 19671906..19672241 930..1265 100 -> Plus
2R 19672294..19672597 1266..1569 100 -> Plus
2R 19672661..19673477 1570..2386 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:01 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19670711..19671149 1..439 100 -> Plus
2R 19671361..19671850 440..929 100 -> Plus
2R 19671906..19672241 930..1265 100 -> Plus
2R 19672294..19672597 1266..1569 100 -> Plus
2R 19672661..19673477 1570..2386 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:13 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558216..15558654 1..439 100 -> Plus
arm_2R 15558866..15559355 440..929 100 -> Plus
arm_2R 15559411..15559746 930..1265 100 -> Plus
arm_2R 15559799..15560102 1266..1569 100 -> Plus
arm_2R 15560166..15560982 1570..2386 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:09:13 Download gff for LD10242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19671910..19672348 1..439 100 -> Plus
2R 19672560..19673049 440..929 100 -> Plus
2R 19673105..19673440 930..1265 100 -> Plus
2R 19673493..19673796 1266..1569 100 -> Plus
2R 19673860..19674676 1570..2386 100   Plus

LD10242.pep Sequence

Translation from 44 to 1717

> LD10242.pep
MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTDASDAES
LSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHL
ELQLQRREERAEHQKVVPQDSPTPTHQQQANAKSAHTNRPGSSTSGEADD
ASRPGESILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQL
FAPDVRHLNPRYRLYRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTL
PQTVSRIREVPGPNEQLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV
RKVLISLAQASAAVIGAGPYAPRLIAMLKQRLINRRNQQADTLQCLVDMG
FKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPGMNMQHSLSSISP
STIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEETAVLA
ALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMT
LSNPKTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGIN
QFYTNRW*

LD10242.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11731-PA 556 GF11731-PA 1..556 1..557 2549 88.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21992-PA 557 GG21992-PA 1..557 1..557 2835 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23012-PA 586 GH23012-PA 1..586 1..557 1930 66.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-PA 557 CG11025-PA 1..557 1..557 2863 100 Plus
isopeptidase-T-3-PC 561 CG11025-PC 1..561 1..557 2848 99.3 Plus
isopeptidase-T-3-PB 435 CG11025-PB 11..435 133..557 2181 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21079-PA 359 GI21079-PA 1..356 1..360 1137 65.2 Plus
Dmoj\GI21080-PA 167 GI21080-PA 1..167 391..557 821 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10356-PA 493 GL10356-PA 1..493 1..557 1503 60.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24943-PA 554 GA24943-PA 1..554 1..557 2244 78 Plus
Dpse\GA24943-PB 436 GA24943-PB 11..436 133..557 1959 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21979-PA 557 GM21979-PA 1..557 1..557 2974 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11475-PA 561 GD11475-PA 1..561 1..557 2948 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20925-PA 572 GJ20925-PA 1..572 1..557 2069 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15885-PA 572 GK15885-PA 1..572 1..557 2216 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12072-PA 557 GE12072-PA 1..557 1..557 2867 96.6 Plus

LD10242.hyp Sequence

Translation from 44 to 1717

> LD10242.hyp
MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTDASDAES
LSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHL
ELQLQRREERAEHQKVVPQDSPTPTHQQQANAKSAHTNRPGSSTSGEADD
ASRPGESILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQL
FAPDVRHLNPRYRLYRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTL
PQTVSRIREVPGPNEQLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV
RKVLISLAQASAAVIGAGPYAPRLIAMLKQRLINRRNQQADTLQCLVDMG
FKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPGMNMQHSLSSISP
STIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEETAVLA
ALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMT
LSNPKTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGIN
QFYTNRW*

LD10242.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-PA 557 CG11025-PA 1..557 1..557 2863 100 Plus
isopeptidase-T-3-PC 561 CG11025-PC 1..561 1..557 2848 99.3 Plus
isopeptidase-T-3-PB 435 CG11025-PB 11..435 133..557 2181 100 Plus