Clone LD10327 Report

Search the DGRC for LD10327

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:103
Well:27
Vector:pBS SK-
Associated Gene/TranscriptCG4825-RA
Protein status:LD10327.pep: gold
Preliminary Size:2108
Sequenced Size:2074

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4825 2001-01-01 Release 2 assignment
CG4825 2001-11-09 Blastp of sequenced clone
CG4825 2003-01-01 Sim4 clustering to Release 3
CG4825 2008-04-29 Release 5.5 accounting
CG4825 2008-08-15 Release 5.9 accounting
CG4825 2008-12-18 5.12 accounting

Clone Sequence Records

LD10327.complete Sequence

2074 bp (2074 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069402

> LD10327.complete
CACCACCGCCGGCAAGTGTCGATTTTTATTGGTCCAAGCCGCGCGCAGCA
TGTTAATTGACAACAACGGACGGTAGCTGGCAAATGATAAAATAAACGTG
CGCCGATCGAACGCGAGTCGAGGATCCAGGAGCCGTGCCCACGCCATAGC
AATCGAGGTCACTCGAGCCGGGAGCCATAGAAACCGCTGCGAGGAGAGCC
GAGTGGCAAGTCTTGGTGGAATCGAATCGAATGTTGCGCAACCTTCAGTC
CCCGCATGTACTTAGCCACCAAACCGATTCCGAGCCACCAACCACCTAAC
AACAACCACATCACGCCACCCGCCTACATTTGATAATCGAATTTGTAGTT
AGGCGATGAAGAAGCGCACTAATTCACGTGGCACCCCGACCTCGTCGGGC
GACGCGCTACTGGACACCTCCTTCTCCTCCGCCGGCGATGCTGAGCGGGA
TCATCCCGCCTACAAATCAGGCGCGGCCAGTGCCCCTGCCACGCCCACCA
AGCGACGGGATGGCAGCGATGGCAGTGTCAGCAGCGCGGGAGCACGCAGG
AAGCGCAAGGACGAGATCGCCCAGACATTTGTGATCGTCAACGAACGTCC
CGTGGACGACATATCGCTGGACTTCTTCTACAAGCCACACACCATCACCT
TGCTGGCTGTTTCGGTGCTCGCCGTCATGTACTTTGCGTTCGTCAGAAAC
GAGGCGAACGTGGATGAGAATCTCTGGGCCGGCCTCCTCTGCATTGTGTT
CTTCTTTCTGATCGTCTCGGTGATTGCATTTCCCAATGGACCCTTCACAC
GACCCCATCCCGCCGTCTGGCGGATATTATTCGGATGCTCTGTGCTGTAC
CTGCTGACGCTACAATTCCTGATGTTCCAAAACTACCCGACTATCAGGAG
CATATTCTACTGGATTGATCCAAAGTTGAAGAACTTCCATATCGATATGG
AAAAGGAGTATGGCGTCAATTGTTCGGACATCAGTTGGGATCGCGTTAAA
GGCCACTTGGACGTCTTTGCCTGGGGTCACTTCTTGGGCTGGGCCTTTAA
GGCCATCCTCATTCGTCACATGGGCATTCTGTGGGCCATTTCTGTGATGT
GGGAGATTACCGAAATAACCTTTGCGCACCTGCTGCCCAACTTCATCGAG
TGCTGGTGGGATGCCCTCATCCTGGATGTGATCATCTGCAACGGTCTCGG
CATTTGGATGGGTCTGAAGATCTGCCAGATTCTGGAGATGCGCGAGTACA
AGTGGGCCAGTATTAAGGACATATCCACCACAACGGGTAAAATCAAGCGT
GCCATGCTGCAATTTACGCCCGAGAGCTGGTCGGCCATTCGCTGGCTGGA
TCCCAAGTCCACGGCGATGAGATTTGCCGCCGTCATTCAGCTTGTGATCT
TCTGGCAGGTCACCGAGCTGAACACATTCTTCTTGAAGCACATCTTTGAG
ATGCCACCGGATCACTTCATTGTGATAGGTCGTCTCATTTTCATCGGTCT
GTTTGTGGCGCCTTCGGTTAGGCAATATTACGTATATGTCACCGACACAC
GCTGCAAGAGAGTCGGCACCCAGTGTTGGGTTTACGGCGCCATCATGGTC
TCCGAAGCTATTCTGTGCATCAAGAATGGCAAGGAGTTGTTTGAGCGCAC
GCAAGCCATCAACATTGTCCTGTGGCTGACTGTCCAAGTAATAATCTCGG
TGGCATTTGTCTACCTCGCGGTTTACTGGCAGCAGCGACAGCTGAAAAAG
GTTTCATCGACGCCCGCAAAAACAAAAGAAACTATTCCTGCCAGCTCATC
ATCGCCCTCGAAAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAAT
AAGAAGTTGATATAAATAAACTTTAAAGCTGCAGAAACAAAGTGGATCGG
GCCATTCTTTAAATTAAAAACCAAAACAGAGAAGAGAATTATGTACATAA
ACTAAAGAAAACTGTACTGATTAAATTAAATACATAACATGTAAATATAT
ATATATATATGTATAAAAGATATATATATATATATATATATATTTATTAA
AAAGACAAAAAAAAAAAAAAAAAA

LD10327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-RA 2298 CG4825-RA 126..2185 1..2060 10300 100 Plus
CG5104-RB 1235 CG5104-RB 913..1160 2060..1813 1240 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20514476..20515171 696..1 3480 100 Minus
chr3L 24539361 chr3L 20512619..20513187 1522..954 2845 100 Minus
chr3L 24539361 chr3L 20513244..20513506 956..694 1315 100 Minus
chr3L 24539361 chr3L 20511430..20511673 2056..1813 1220 100 Minus
chr3L 24539361 chr3L 20512342..20512556 1732..1518 1075 100 Minus
chr3L 24539361 chr3L 20512190..20512277 1817..1730 440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20525486..20526181 696..1 3480 100 Minus
3L 28110227 3L 20523629..20524197 1522..954 2845 100 Minus
3L 28110227 3L 20524254..20524516 956..694 1315 100 Minus
3L 28110227 3L 20522436..20522683 2060..1813 1240 100 Minus
3L 28110227 3L 20523352..20523566 1732..1518 1075 100 Minus
3L 28110227 3L 20523200..20523287 1817..1730 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20518586..20519281 696..1 3480 100 Minus
3L 28103327 3L 20516729..20517297 1522..954 2845 100 Minus
3L 28103327 3L 20517354..20517616 956..694 1315 100 Minus
3L 28103327 3L 20515536..20515783 2060..1813 1240 100 Minus
3L 28103327 3L 20516452..20516666 1732..1518 1075 100 Minus
3L 28103327 3L 20516300..20516387 1817..1730 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:01:50 has no hits.

LD10327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:03:10 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20511496..20511671 1815..1990 100 <- Minus
chr3L 20512193..20512274 1733..1814 100 <- Minus
chr3L 20512342..20512552 1522..1732 100 <- Minus
chr3L 20512620..20513185 956..1521 100 <- Minus
chr3L 20513245..20513503 697..955 100 <- Minus
chr3L 20514476..20515171 1..696 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:40 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 356..1852 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:58 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 356..1852 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:25:47 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 356..1852 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:35 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 356..1852 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:01 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 356..1852 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:22 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..2056 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:58 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 14..2069 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:47 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RB 1..2046 8..2056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:35 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..2056 1..2056 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:01 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RB 1..2046 8..2056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:10 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20522440..20522681 1815..2056 100 <- Minus
3L 20523203..20523284 1733..1814 100 <- Minus
3L 20523352..20523562 1522..1732 100 <- Minus
3L 20523630..20524195 956..1521 100 <- Minus
3L 20524255..20524513 697..955 100 <- Minus
3L 20525486..20526181 1..696 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:10 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20522440..20522681 1815..2056 100 <- Minus
3L 20523203..20523284 1733..1814 100 <- Minus
3L 20523352..20523562 1522..1732 100 <- Minus
3L 20523630..20524195 956..1521 100 <- Minus
3L 20524255..20524513 697..955 100 <- Minus
3L 20525486..20526181 1..696 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:10 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20522440..20522681 1815..2056 100 <- Minus
3L 20523203..20523284 1733..1814 100 <- Minus
3L 20523352..20523562 1522..1732 100 <- Minus
3L 20523630..20524195 956..1521 100 <- Minus
3L 20524255..20524513 697..955 100 <- Minus
3L 20525486..20526181 1..696 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:47 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20516303..20516384 1733..1814 100 <- Minus
arm_3L 20515540..20515781 1815..2056 100 <- Minus
arm_3L 20516452..20516662 1522..1732 100 <- Minus
arm_3L 20516730..20517295 956..1521 100 <- Minus
arm_3L 20517355..20517613 697..955 100 <- Minus
arm_3L 20518586..20519281 1..696 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:45 Download gff for LD10327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20515540..20515781 1815..2056 100 <- Minus
3L 20516303..20516384 1733..1814 100 <- Minus
3L 20516452..20516662 1522..1732 100 <- Minus
3L 20516730..20517295 956..1521 100 <- Minus
3L 20517355..20517613 697..955 100 <- Minus
3L 20518586..20519281 1..696 100   Minus

LD10327.pep Sequence

Translation from 355 to 1851

> LD10327.pep
MKKRTNSRGTPTSSGDALLDTSFSSAGDAERDHPAYKSGAASAPATPTKR
RDGSDGSVSSAGARRKRKDEIAQTFVIVNERPVDDISLDFFYKPHTITLL
AVSVLAVMYFAFVRNEANVDENLWAGLLCIVFFFLIVSVIAFPNGPFTRP
HPAVWRILFGCSVLYLLTLQFLMFQNYPTIRSIFYWIDPKLKNFHIDMEK
EYGVNCSDISWDRVKGHLDVFAWGHFLGWAFKAILIRHMGILWAISVMWE
ITEITFAHLLPNFIECWWDALILDVIICNGLGIWMGLKICQILEMREYKW
ASIKDISTTTGKIKRAMLQFTPESWSAIRWLDPKSTAMRFAAVIQLVIFW
QVTELNTFFLKHIFEMPPDHFIVIGRLIFIGLFVAPSVRQYYVYVTDTRC
KRVGTQCWVYGAIMVSEAILCIKNGKELFERTQAINIVLWLTVQVIISVA
FVYLAVYWQQRQLKKVSSTPAKTKETIPASSSSPSKGKLSPQKEKKLK*

LD10327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24124-PA 489 GF24124-PA 1..489 1..498 2469 93.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13301-PA 498 GG13301-PA 1..498 1..498 2593 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17010-PA 487 GH17010-PA 1..487 1..498 2188 84.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-PA 498 CG4825-PA 1..498 1..498 2630 100 Plus
CG4825-PB 497 CG4825-PB 1..497 1..498 2613 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11904-PA 492 GI11904-PA 1..492 1..498 2239 84.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12769-PA 487 GL12769-PA 1..460 1..475 2244 88.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18460-PA 374 GA18460-PA 1..374 1..389 1839 88.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22203-PA 498 GM22203-PA 1..498 1..498 2616 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12178-PA 347 GD12178-PA 1..285 1..285 1495 96.5 Plus
Dsim\GD12178-PA 347 GD12178-PA 286..347 437..498 289 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13778-PA 487 GJ13778-PA 1..487 1..498 2317 87.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10791-PA 500 GK10791-PA 1..499 1..495 2223 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22393-PA 498 GE22393-PA 1..498 1..498 2605 97.8 Plus

LD10327.hyp Sequence

Translation from 355 to 1851

> LD10327.hyp
MKKRTNSRGTPTSSGDALLDTSFSSAGDAERDHPAYKSGAASAPATPTKR
RDGSDGSVSSAGARRKRKDEIAQTFVIVNERPVDDISLDFFYKPHTITLL
AVSVLAVMYFAFVRNEANVDENLWAGLLCIVFFFLIVSVIAFPNGPFTRP
HPAVWRILFGCSVLYLLTLQFLMFQNYPTIRSIFYWIDPKLKNFHIDMEK
EYGVNCSDISWDRVKGHLDVFAWGHFLGWAFKAILIRHMGILWAISVMWE
ITEITFAHLLPNFIECWWDALILDVIICNGLGIWMGLKICQILEMREYKW
ASIKDISTTTGKIKRAMLQFTPESWSAIRWLDPKSTAMRFAAVIQLVIFW
QVTELNTFFLKHIFEMPPDHFIVIGRLIFIGLFVAPSVRQYYVYVTDTRC
KRVGTQCWVYGAIMVSEAILCIKNGKELFERTQAINIVLWLTVQVIISVA
FVYLAVYWQQRQLKKVSSTPAKTKETIPASSSSPSKGKLSPQKEKKLK*

LD10327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-PA 498 CG4825-PA 1..498 1..498 2630 100 Plus
CG4825-PB 497 CG4825-PB 1..497 1..498 2613 99.8 Plus