Clone LD10347 Report

Search the DGRC for LD10347

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:103
Well:47
Vector:pBS SK-
Associated Gene/TranscriptCG31381-RA
Protein status:LD10347.pep: gold
Sequenced Size:4041

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31381 2003-01-01 Sim4 clustering to Release 3
CG11089 2008-04-29 Release 5.5 accounting
CG11089 2008-08-15 Release 5.9 accounting
CG31381 2008-08-15 Release 5.9 accounting
CG11089 2008-12-18 5.12 accounting
CG31381 2008-12-18 5.12 accounting

Clone Sequence Records

LD10347.complete Sequence

4041 bp assembled on 2007-03-16

GenBank Submission: BT030439.1

> LD10347.complete
AATACCAATTACTTGTAAGCACAAAAAACAGCTGACGGCAACAAGTGGTT
CGGTCCCCATCGGAATACACGTGCTCAAAACGTGTGGGTTTTATTTGCCT
TAATTGACTTAAATTCACTCGCAATAAGTGGAAATGATTCGAAAGGTGCC
GCTAATTGTAGTCCTGGGCTCCACGGGCACCGGAAAGACGAAACTGTCTT
TGCAACTGGCCGAACGCTTCGGAGGAGAAATAATCAGCGCTGACTCCATG
CAGGTTTACACCCACCTGGACATCGCCACCGCCAAGGCAACCAAGGAGGA
GCAGTCCCGGGCACGACATCATCTACTGGACGTGGCCACACCGGCCGAAC
CCTTCACAGTCACTCACTTTCGTAACGCAGCACTGCCCATTGTGGAGCGC
CTGCTCGCCAAGGACACTTCTCCGATTGTGGTGGGCGGCACGAATTACTA
CATAGAATCCCTACTTTGGGATATTCTGGTTGACTCGGATGTCAAGCCGG
ACGAAGGCAAACATTCGGGGGAGCATCTTAAGGATGCCGAACTGAATGCT
TTGTCCACCCTCGAGCTGCATCAGCACCTTGCCAAGATCGACGCAGGTAG
TGCCAACCGTATTCACCCCAACAACCGGCGCAAGATCATCCGGGCTATCG
AAGTGTATCAGAGCACCGGGCAGACTTTGAGCCAGATGCTGGCGGAACAG
CGGGCACAGCCGGGAGGAAACCGCCTGGGTGGACCCCTTCGCTATCCACA
CATCGTTCTCCTTTGGTTGCGTTGCCAGCAGGATGTTCTAAACGAGCGAT
TGGATTCCCGCGTAGATGGCATGCTGGCCCAAGGGCTGCTCCCTGAACTA
CGACAGTTTCACAATGCCCACCATGCTACCACTGTGCAAGCCTATACGTC
GGGAGTTCTGCAGACGATTGGCTACAAGGAGTTTATTCCCTATCTGATCA
AGTACGACCAGCAGCAGGACGAAAAGATAGAGGAGTACCTCAAAACCCAT
AGTTACAAGCTGCCAGGCCCAGAAAAACTGAAAGAAGAAGGTCTTCCAGA
TGGCTTGGAACTCCTACGCAATTGTTGCGAAGAACTAAAGTTAGTCACTC
GCCGATACTCAAAGAAGCAGCTGAAGTGGATCAACAATCGATTCCTGGCC
AGCAAAGATCGTCAAGTGCCGGATCTCTACGAACTGGACACCAGTGATGT
GTCAGCTTGGCAGGTGGCAGTCTACAAGCGGGCAGAGACCATCATAGAAA
GCTATCGAAACGAAGAGGCTTGCGAGATACTACCAATGGCCAAGCGGGAG
CATCCTGGAGCGGATTTGGATGAGGAGACTAGCCATTTTTGTCAAATATG
CGAACGGCATTTCGTTGGGGAGTACCAATGGGGACTGCATATGAAGTCCA
ACAAACACAAGCGAAGAAAGGAGGGACAGCGCAAGCGGCAAAGGGATCAC
GAAACAATGCTCTCAACGGATCTAGCGAAGAAGCAAAAGGAGGAGAAAGA
GGAGGCAGGAAAGGCGGAGACTCAGCCACCACCCAGCCGAGTCAATGATA
CTGATAAGGCAATGTAACACTAGACGCGGCTTGGCAATAAATGAACCTAC
GTAAATTTGAGTCATTTGTTGTTGTTTTGAATCTCAATCCCACCGTTTTG
CTGCTGATGCAAGCGGCTTGAGGAGTATCTGATAACCCTACACCTCGCTA
ATGGGGACCACAGACCGCAGGGGAGGTCGTTGCCTAGCCAGAAAAGCGAA
AACGCGTAAACATGTTTGTGCACCGAACAACCAGCCCACACAATCGCCAT
CGCCCACTGACTGATCTCGTCTTTCATTTGCATTTCAGTTGCCCAGCGGT
TCAGACGCAATTAGAGAAACCAATCATCAACCATGAGCTCCAGCAAGATT
GCTCTTCTCAGTGTGTCGGACAAGACGGGCCTGCTCGACTTGGGCAAGAG
TTTGGTGGCACTGGGCTTTGACCTGGTTGCCAGTGGAGGCACTGCAACTA
GCTTGCGTGGCGCTGGCCTGAAGGTGAGGGATGTCTCGGAGATTACAGGA
GCACCTGAGATGCTCGGTGGACGTGTGAAGACGCTGCACCCGGCTGTGCA
TGCTGGAATCCTTTCCCGCACCACCGACTCTGATCTGGCTGACATGCGCA
AGCAGGGCTTCGATCTTATCCAGCTGGTGGTCTGCAATCTGTACCCCTTC
GCCAGCACCGTAGCGAAGCCTGATGTTACGCTGGCCGATGCCGTGGAGAA
CATCGATATTGGAGGCGTTACTCTGCTCCGGGCGGCTGCTAAGAATCACC
AGCGAGTCACAGTTGTCTGCGAAGCAGTGGATTATGATCGTGTCCTGTCG
GAGTTGAAGGCTTCGGGGAATACCACCGTGGAGACGCGTCAGGCTCTGGC
TCTCAAGGCATTCACGCACACCGCCACCTACGATGATGCCATCTCAGATT
ACTTCAGGAAACAGTATGGATCTGGGGTGTCCCAGCTACCGTTGCGCTAT
GGCATGAATCCCCACCAGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAA
GCTTCCACTGACGGTCCTCAATGCCTCGCCGGGATTTATCAACCTGTGCG
ACGCCCTCAACGGTTGGCAGTTGGTTAGGGAACTGAAGAAGGCTCTGCAG
CTGCCGGCGGCCACCAGCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGT
TGGAGTGCCTCTAAATCCGGCACAGGCCAAGCTGTGCATGGTGGATGATC
TGTACGAGCAGTTGACACCTCTGGCAACGGCCTATGCTCGTGCCCGTGGA
GCCGACCGCATGAGCTCCTTCGGCGACTTTGTGGCCCTCTCTGATGTGTG
CGATGTTGTGACGGCCAGGATAATCTCGCGAGAGGTGTCCGATGGTATTA
TTGCCGCGGGTTATGAGCCCGAAGCTCTGGAGATCCTGAAGAAAAAGAAG
AATGGCGGCTACTGTATACTGCAGATGGACCCCAACTACGAACCCTCCGC
GGTGGAGCGCAAGACTATTTTTGGTCTGACGCTGGAGCAGAAGCGCAACG
ATGCTGTCATCGACGCCTCGCTCTTTTCCAATGTGGTGAGCAAGCGTGGT
CCTCTGCCCGAGGTGGCTGTGCGGGATCTGATCGTGGCCACCATTGCCTT
GAAGTACACTCAGAGCAACTCCGTGTGCTACGCCCGCGATGGCCAGGTCG
TGGGCATCGGTGCCGGCCAGCAGTCGAGGATTCACTGCACCCGCTTGGCG
GGCGAGAAGGCGGACAACTGGTGGCTGCGTCAGCATCCCAGCGTGGCCGG
CATGAAGTTCAAGGCTGGTGTGAAGCGGGCGGAGATCTCTAATGCAATCG
ACAATTACGTAAACGGAACTGTGGGCAAGGACATGCCTTTGTCGCAGTTC
GAGGGAATGTTCGATAAGGCACCAGCCCAACTGACCAGTGAGCAAAAAGT
GGAATGGTTAAAGCAGCTGAGTGGCGTGGCCTTGGGATCCGATGCCTTCT
TCCCCTTCCGTGATAATATCGATCGCGCTAGCCTGAGCGGCGTCTCCTAC
ATAGCCAGTCCCGCAGGATCCACCAATGATGCTGGTGTCATTGCCGCCTG
CGATGAGCACGGTATCATCATGGCCCATACCAATCTGCGATTGTTCCACC
ATTAGGTTCAACACACTCTTGAGTATACGATTCATTCCCAGTTTTTAAGC
TCTTTCTTTGATTTCCATAAAGTTCAACTTTAAATCCCAACTTCTCAAGT
CGAATACATAAGAGAATTGTAAATAATTCTCAATTCAGTTAATTTGATTT
ACGTTCTAAACTGAAATCTATAACCTACGTAGAAAGGCATTTTTAAATAT
GTAGCAAAATTACATATCTGAAATAATTGTAGTTGTATTTGAAATATTTT
TGATAACATTTGTAGCGTTTTAAGTATTTTTATAGAAACACCCTGTTAAT
CAAACCCCATCAAACTGCCTTATGACCATTCCAAGCTCAATAAAACCACT
TGCCTTTAGTTAGTTAAACGAAAAAAAAAAAAAAAAAAAAA

LD10347.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089.b 4089 CG11089.b 70..4089 1..4020 20100 100 Plus
CG11089.a 2251 CG11089.a 67..2251 1836..4020 10925 100 Plus
CG11089-RA 2278 CG11089-RA 89..2272 1839..4022 10920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20700405..20702305 1..1901 9505 100 Plus
chr3R 27901430 chr3R 20702362..20703435 1901..2974 5370 100 Plus
chr3R 27901430 chr3R 20704179..20704664 3535..4020 2430 100 Plus
chr3R 27901430 chr3R 20703497..20703934 2973..3410 2190 100 Plus
chr3R 27901430 chr3R 20703992..20704118 3409..3535 635 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24877219..24879119 1..1901 9505 100 Plus
3R 32079331 3R 24879176..24880249 1901..2974 5370 100 Plus
3R 32079331 3R 24880993..24881480 3535..4022 2440 100 Plus
3R 32079331 3R 24880311..24880748 2973..3410 2190 100 Plus
3R 32079331 3R 24880806..24880932 3409..3535 635 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24618050..24619950 1..1901 9505 100 Plus
3R 31820162 3R 24620007..24621080 1901..2974 5370 100 Plus
3R 31820162 3R 24621824..24622311 3535..4022 2440 100 Plus
3R 31820162 3R 24621142..24621579 2973..3410 2190 100 Plus
3R 31820162 3R 24621637..24621763 3409..3535 635 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:27:42 has no hits.

LD10347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:29 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20700405..20702305 1..1901 100 -> Plus
chr3R 20702363..20703435 1902..2974 100 -> Plus
chr3R 20703499..20703932 2975..3408 100 -> Plus
chr3R 20703992..20704118 3409..3535 100 -> Plus
chr3R 20704180..20704664 3536..4020 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:41 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 1883..3655 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:06:34 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RC 1..1773 1883..3655 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:15 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RC 1..1773 1883..3655 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:16:25 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 1883..3655 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:16 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1..1773 1883..3655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-27 15:32:28 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 58..2249 1827..4020 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:06:34 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG31381-RC 68..4087 1..4020 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:15 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RD 91..4110 1..4020 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:16:25 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 58..2249 1827..4020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:16 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RB 1..2195 1826..4020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:29 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877219..24879119 1..1901 100 -> Plus
3R 24879177..24880249 1902..2974 100 -> Plus
3R 24880313..24880746 2975..3408 100 -> Plus
3R 24880806..24880932 3409..3535 100 -> Plus
3R 24880994..24881478 3536..4020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:29 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877219..24879119 1..1901 100 -> Plus
3R 24879177..24880249 1902..2974 100 -> Plus
3R 24880313..24880746 2975..3408 100 -> Plus
3R 24880806..24880932 3409..3535 100 -> Plus
3R 24880994..24881478 3536..4020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:29 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24877219..24879119 1..1901 100 -> Plus
3R 24879177..24880249 1902..2974 100 -> Plus
3R 24880313..24880746 2975..3408 100 -> Plus
3R 24880806..24880932 3409..3535 100 -> Plus
3R 24880994..24881478 3536..4020 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:15 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20702941..20704841 1..1901 100 -> Plus
arm_3R 20704899..20705971 1902..2974 100 -> Plus
arm_3R 20706035..20706468 2975..3408 100 -> Plus
arm_3R 20706528..20706654 3409..3535 100 -> Plus
arm_3R 20706716..20707200 3536..4020 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:39:58 Download gff for LD10347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24621637..24621763 3409..3535 100 -> Plus
3R 24618050..24619950 1..1901 100 -> Plus
3R 24620008..24621080 1902..2974 100 -> Plus
3R 24621144..24621577 2975..3408 100 -> Plus
3R 24621825..24622309 3536..4020 100   Plus

LD10347.pep Sequence

Translation from 133 to 1566

> LD10347.pep
MIRKVPLIVVLGSTGTGKTKLSLQLAERFGGEIISADSMQVYTHLDIATA
KATKEEQSRARHHLLDVATPAEPFTVTHFRNAALPIVERLLAKDTSPIVV
GGTNYYIESLLWDILVDSDVKPDEGKHSGEHLKDAELNALSTLELHQHLA
KIDAGSANRIHPNNRRKIIRAIEVYQSTGQTLSQMLAEQRAQPGGNRLGG
PLRYPHIVLLWLRCQQDVLNERLDSRVDGMLAQGLLPELRQFHNAHHATT
VQAYTSGVLQTIGYKEFIPYLIKYDQQQDEKIEEYLKTHSYKLPGPEKLK
EEGLPDGLELLRNCCEELKLVTRRYSKKQLKWINNRFLASKDRQVPDLYE
LDTSDVSAWQVAVYKRAETIIESYRNEEACEILPMAKREHPGADLDEETS
HFCQICERHFVGEYQWGLHMKSNKHKRRKEGQRKRQRDHETMLSTDLAKK
QKEEKEEAGKAETQPPPSRVNDTDKAM*

LD10347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16308-PA 478 GF16308-PA 1..478 1..477 2017 77.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11331-PA 466 GG11331-PA 1..464 1..465 2264 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14052-PA 461 GH14052-PA 1..436 1..437 1775 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31381-PB 477 CG31381-PB 1..477 1..477 2489 100 Plus
CG31381-PA 477 CG31381-PA 1..477 1..477 2489 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24427-PA 449 GI24427-PA 1..446 1..442 1831 75.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24457-PA 456 GL24457-PA 1..423 1..423 1834 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16221-PA 454 GA16221-PA 1..423 1..423 1863 79.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26639-PA 458 GM26639-PA 1..458 1..477 2221 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21141-PA 477 GD21141-PA 1..477 1..477 2384 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10702-PA 462 GJ10702-PA 1..441 1..438 1829 77.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12971-PA 449 GK12971-PA 1..438 1..436 1792 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23526-PA 477 GE23526-PA 1..477 1..477 2347 91.2 Plus

LD10347.hyp Sequence

Translation from 1882 to 3654

> LD10347.hyp
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*

LD10347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PB 590 CG11089-PB 1..590 1..590 2998 100 Plus
CG11089-PA 590 CG11089-PA 1..590 1..590 2998 100 Plus