BDGP Sequence Production Resources |
Search the DGRC for LD10408
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 104 |
Well: | 8 |
Vector: | pBS SK- |
Associated Gene/Transcript | Su(var)205-RA |
Protein status: | LD10408.pep: gold |
Preliminary Size: | 1190 |
Sequenced Size: | 1026 |
Gene | Date | Evidence |
---|---|---|
CG8409 | 2001-01-01 | Release 2 assignment |
CG8409 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8409 | 2003-01-15 | Blastp of sequenced clone |
Su(var)205 | 2008-04-29 | Release 5.5 accounting |
Su(var)205 | 2008-08-15 | Release 5.9 accounting |
Su(var)205 | 2008-12-18 | 5.12 accounting |
1026 bp (1026 high quality bases) assembled on 2003-01-15
GenBank Submission: AY061119
> LD10408.complete CCACGCGTACTTTCGCACACTGTTCGGCCGGCGTCATTTTAGAACGCGCA TTTTTTTGCAGATTTTTCATTTTGTGGAAAGTCTTCTAGCGCCAACACAC AGGCTTATAAAAACCAATTTAGCTGCGTGCATAAAGTGTAGATCTTATTT AATCTAGTATTTTAATAAAAACAAAATGGGCAAGAAAATCGACAACCCTG AGAGCTCGGCAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCC GTGGAAAAGATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTA TCTGAAATGGAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGA ACAATCTCGACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAG GATGAGGAGAAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGC CAAGGCCAAGGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAA GCAAGCGAAAGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAA CGTACCACAGATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGG ATTCGATCGCGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATA ATGGCCGCCTGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAA ATGGTGCCCTCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCA CTTCTACGAAGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAACAG TTGGATCATCGAAAGCGAAAAAGAACGATTATACATTTAACGAAAAATTA CCCACTTAGAATTATAGCTCCTTGCAGGCGCTTTCAAAACCACCCAACCA ACTCTTAAGGCATCGGACTTTTTTCCATAAATGTCCAGAGTCAGTGTCTG TATTTATGATAACCATTTTCAATAAATAAAAAAAACCTTTATTCTGCTGG AGCCTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Su(var)205-RA | 1180 | Su(var)205-RA | 143..1148 | 1..1006 | 5030 | 100 | Plus |
Su(var)205-RB | 1257 | Su(var)205-RB | 375..1225 | 156..1006 | 4255 | 100 | Plus |
Su(var)205-RB | 1257 | Su(var)205-RB | 103..259 | 1..157 | 785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8208604..8209085 | 1005..526 | 2345 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 8209959..8210115 | 157..1 | 785 | 100 | Minus |
chr2L | 23010047 | chr2L | 8209707..8209843 | 292..156 | 685 | 100 | Minus |
chr2L | 23010047 | chr2L | 8209333..8209455 | 527..405 | 615 | 100 | Minus |
chr2L | 23010047 | chr2L | 8209529..8209648 | 407..288 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8209625..8210105 | 1006..526 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 8210979..8211135 | 157..1 | 785 | 100 | Minus |
2L | 23513712 | 2L | 8210727..8210863 | 292..156 | 685 | 100 | Minus |
2L | 23513712 | 2L | 8210353..8210475 | 527..405 | 615 | 100 | Minus |
2L | 23513712 | 2L | 8210549..8210668 | 407..288 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8209625..8210105 | 1006..526 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 8210979..8211135 | 157..1 | 785 | 100 | Minus |
2L | 23513712 | 2L | 8210727..8210863 | 292..156 | 685 | 100 | Minus |
2L | 23513712 | 2L | 8210353..8210475 | 527..405 | 615 | 100 | Minus |
2L | 23513712 | 2L | 8210549..8210668 | 407..288 | 600 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8209333..8209453 | 407..527 | 100 | <- | Minus |
chr2L | 8209530..8209646 | 290..406 | 100 | <- | Minus |
chr2L | 8209710..8209841 | 158..289 | 100 | <- | Minus |
chr2L | 8209959..8210115 | 1..157 | 100 | Minus | |
chr2L | 8208604..8209083 | 528..1005 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RB | 1..621 | 176..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RB | 1..621 | 176..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..621 | 176..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RB | 1..621 | 176..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..621 | 176..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..968 | 3..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..1003 | 3..1005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..992 | 14..1005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..968 | 3..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Su(var)205-RA | 1..992 | 14..1005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8209626..8210103 | 528..1005 | 100 | <- | Minus |
2L | 8210353..8210473 | 407..527 | 100 | <- | Minus |
2L | 8210550..8210666 | 290..406 | 100 | <- | Minus |
2L | 8210730..8210861 | 158..289 | 100 | <- | Minus |
2L | 8210979..8211135 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8209626..8210103 | 528..1005 | 100 | <- | Minus |
2L | 8210353..8210473 | 407..527 | 100 | <- | Minus |
2L | 8210550..8210666 | 290..406 | 100 | <- | Minus |
2L | 8210730..8210861 | 158..289 | 100 | <- | Minus |
2L | 8210979..8211135 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8209626..8210103 | 528..1005 | 100 | <- | Minus |
2L | 8210353..8210473 | 407..527 | 100 | <- | Minus |
2L | 8210550..8210666 | 290..406 | 100 | <- | Minus |
2L | 8210730..8210861 | 158..289 | 100 | <- | Minus |
2L | 8210979..8211135 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8209626..8210103 | 528..1005 | 100 | <- | Minus |
arm_2L | 8210353..8210473 | 407..527 | 100 | <- | Minus |
arm_2L | 8210550..8210666 | 290..406 | 100 | <- | Minus |
arm_2L | 8210730..8210861 | 158..289 | 100 | <- | Minus |
arm_2L | 8210979..8211135 | 1..157 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8210979..8211135 | 1..157 | 100 | Minus | |
2L | 8209626..8210103 | 528..1005 | 100 | <- | Minus |
2L | 8210353..8210473 | 407..527 | 100 | <- | Minus |
2L | 8210550..8210666 | 290..406 | 100 | <- | Minus |
2L | 8210730..8210861 | 158..289 | 100 | <- | Minus |
Translation from 175 to 795
> LD10408.pep MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW YSDNED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15276-PA | 210 | GF15276-PA | 1..210 | 1..206 | 726 | 72.6 | Plus |
Dana\GF19189-PA | 227 | GF19189-PA | 3..154 | 23..202 | 390 | 43.3 | Plus |
Dana\GF16710-PA | 231 | GF16710-PA | 5..133 | 21..195 | 270 | 34.7 | Plus |
Dana\GF22550-PA | 367 | GF22550-PA | 161..240 | 22..101 | 157 | 38.8 | Plus |
Dana\GF13301-PA | 132 | GF13301-PA | 7..110 | 89..198 | 152 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23468-PA | 205 | GG23468-PA | 1..205 | 1..206 | 930 | 92.2 | Plus |
Dere\GG18283-PA | 238 | GG18283-PA | 3..154 | 23..202 | 396 | 43.9 | Plus |
Dere\GG16196-PA | 170 | GG16196-PA | 1..161 | 1..200 | 273 | 33 | Plus |
Dere\GG11164-PA | 237 | GG11164-PA | 5..139 | 21..202 | 252 | 32.2 | Plus |
Dere\GG24367-PA | 106 | GG24367-PA | 16..82 | 142..206 | 185 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10251-PA | 203 | GH10251-PA | 1..203 | 1..206 | 703 | 69.4 | Plus |
Dgri\GH17802-PA | 215 | GH17802-PA | 3..153 | 23..202 | 399 | 45 | Plus |
Dgri\GH18923-PA | 238 | GH18923-PA | 5..133 | 21..195 | 239 | 31.2 | Plus |
Dgri\GH16158-PA | 392 | GH16158-PA | 9..60 | 24..75 | 157 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Su(var)205-PB | 206 | CG8409-PB | 1..206 | 1..206 | 1059 | 100 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 1..206 | 1..206 | 1059 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PC | 240 | CG7041-PC | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PA | 240 | CG7041-PA | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1c-PA | 237 | CG6990-PA | 3..134 | 19..196 | 252 | 31.8 | Plus |
HP1e-PA | 174 | CG8120-PA | 22..166 | 19..201 | 239 | 31.1 | Plus |
HP6-PA | 106 | CG15636-PA | 4..83 | 127..206 | 184 | 45 | Plus |
rhi-PA | 418 | CG10683-PA | 1..126 | 1..121 | 163 | 33.1 | Plus |
Pc-PA | 390 | CG32443-PA | 26..131 | 24..115 | 159 | 34.9 | Plus |
Oxp-PA | 84 | CG18186-PA | 12..71 | 14..72 | 141 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15430-PA | 226 | GI15430-PA | 1..226 | 1..206 | 736 | 70.4 | Plus |
Dmoj\GI15142-PA | 211 | GI15142-PA | 3..154 | 23..202 | 397 | 44.4 | Plus |
Dmoj\GI20276-PA | 180 | GI20276-PA | 3..149 | 23..203 | 332 | 39.2 | Plus |
Dmoj\GI24000-PA | 171 | GI24000-PA | 11..162 | 14..198 | 325 | 38.4 | Plus |
Dmoj\GI23231-PA | 234 | GI23231-PA | 5..133 | 21..195 | 256 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19396-PA | 205 | GL19396-PA | 1..205 | 1..206 | 751 | 79.4 | Plus |
Dper\GL12976-PA | 266 | GL12976-PA | 3..152 | 23..201 | 365 | 41.3 | Plus |
Dper\GL23765-PA | 229 | GL23765-PA | 5..141 | 21..204 | 259 | 32.4 | Plus |
Dper\GL15653-PA | 133 | GL15653-PA | 2..85 | 112..200 | 175 | 45.1 | Plus |
Dper\GL13026-PA | 310 | GL13026-PA | 141..271 | 71..201 | 164 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\HP1A-PA | 205 | GA21056-PA | 1..205 | 1..206 | 751 | 79.4 | Plus |
Dpse\HP1B-PA | 234 | GA20053-PA | 3..152 | 23..201 | 363 | 41.3 | Plus |
Dpse\HP1C-PA | 229 | GA20011-PA | 5..141 | 21..204 | 261 | 32.4 | Plus |
Dpse\GA26074-PA | 140 | GA26074-PA | 2..85 | 112..200 | 171 | 46.2 | Plus |
Dpse\GA29223-PA | 140 | GA29223-PA | 2..85 | 112..200 | 166 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13138-PA | 206 | GM13138-PA | 1..206 | 1..206 | 1047 | 96.6 | Plus |
Dsec\GM13712-PA | 240 | GM13712-PA | 3..153 | 23..201 | 397 | 44.1 | Plus |
Dsec\GM23793-PA | 176 | GM23793-PA | 22..169 | 19..204 | 262 | 33.3 | Plus |
Dsec\GM26466-PA | 237 | GM26466-PA | 5..139 | 21..202 | 252 | 31.7 | Plus |
Dsec\GM18083-PA | 99 | GM18083-PA | 25..81 | 142..198 | 200 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22433-PA | 206 | GD22433-PA | 1..206 | 1..206 | 1043 | 96.1 | Plus |
Dsim\GD16926-PA | 240 | GD16926-PA | 3..153 | 23..201 | 400 | 44.7 | Plus |
Dsim\GD18604-PA | 176 | GD18604-PA | 1..166 | 1..201 | 258 | 30.9 | Plus |
Dsim\GD20982-PA | 237 | GD20982-PA | 5..139 | 21..202 | 251 | 31.7 | Plus |
Dsim\HP6-PA | 112 | GD22699-PA | 25..93 | 142..206 | 197 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Su(var)205-PA | 213 | GJ17281-PA | 1..213 | 1..206 | 764 | 75.2 | Plus |
Dvir\GJ22004-PA | 183 | GJ22004-PA | 3..152 | 23..203 | 325 | 40.3 | Plus |
Dvir\GJ23632-PA | 174 | GJ23632-PA | 1..160 | 5..198 | 311 | 38.1 | Plus |
Dvir\GJ22891-PA | 235 | GJ22891-PA | 5..141 | 21..204 | 272 | 33 | Plus |
Dvir\GJ19002-PA | 128 | GJ19002-PA | 13..73 | 142..202 | 219 | 59 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14980-PA | 205 | GK14980-PA | 1..205 | 1..206 | 673 | 72.5 | Plus |
Dwil\GK16242-PA | 277 | GK16242-PA | 3..156 | 23..202 | 381 | 43.9 | Plus |
Dwil\GK13747-PA | 176 | GK13747-PA | 16..176 | 15..199 | 358 | 45.2 | Plus |
Dwil\GK11473-PA | 239 | GK11473-PA | 5..139 | 21..202 | 267 | 33.9 | Plus |
Dwil\GK15187-PA | 369 | GK15187-PA | 15..163 | 22..206 | 262 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Su(var)205-PA | 205 | GE11133-PA | 1..205 | 1..206 | 986 | 94.2 | Plus |
Dyak\GE15815-PA | 240 | GE15815-PA | 3..154 | 23..202 | 396 | 43.9 | Plus |
Dyak\GE25940-PA | 173 | GE25940-PA | 1..164 | 1..200 | 261 | 31.5 | Plus |
Dyak\GE10331-PA | 238 | GE10331-PA | 5..139 | 21..202 | 252 | 32.2 | Plus |
Dyak\GE14704-PA | 108 | GE14704-PA | 15..74 | 141..200 | 205 | 56.7 | Plus |
Translation from 175 to 795
> LD10408.hyp MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW YSDNED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Su(var)205-PB | 206 | CG8409-PB | 1..206 | 1..206 | 1059 | 100 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 1..206 | 1..206 | 1059 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PC | 240 | CG7041-PC | 3..154 | 23..202 | 395 | 44.4 | Plus |
HP1b-PA | 240 | CG7041-PA | 3..154 | 23..202 | 395 | 44.4 | Plus |