Clone LD10408 Report

Search the DGRC for LD10408

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:8
Vector:pBS SK-
Associated Gene/TranscriptSu(var)205-RA
Protein status:LD10408.pep: gold
Preliminary Size:1190
Sequenced Size:1026

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8409 2001-01-01 Release 2 assignment
CG8409 2003-01-01 Sim4 clustering to Release 3
CG8409 2003-01-15 Blastp of sequenced clone
Su(var)205 2008-04-29 Release 5.5 accounting
Su(var)205 2008-08-15 Release 5.9 accounting
Su(var)205 2008-12-18 5.12 accounting

Clone Sequence Records

LD10408.complete Sequence

1026 bp (1026 high quality bases) assembled on 2003-01-15

GenBank Submission: AY061119

> LD10408.complete
CCACGCGTACTTTCGCACACTGTTCGGCCGGCGTCATTTTAGAACGCGCA
TTTTTTTGCAGATTTTTCATTTTGTGGAAAGTCTTCTAGCGCCAACACAC
AGGCTTATAAAAACCAATTTAGCTGCGTGCATAAAGTGTAGATCTTATTT
AATCTAGTATTTTAATAAAAACAAAATGGGCAAGAAAATCGACAACCCTG
AGAGCTCGGCAAAGGTTTCCGATGCCGAAGAGGAGGAGGAGGAGTACGCC
GTGGAAAAGATCATCGACAGGCGGGTGCGCAAGGGAAAGGTGGAGTACTA
TCTGAAATGGAAGGGCTATCCCGAAACTGAGAACACGTGGGAGCCGGAGA
ACAATCTCGACTGCCAGGATCTTATCCAGCAGTACGAGGCGAGCCGCAAG
GATGAGGAGAAGTCAGCCGCCTCCAAGAAGGATCGACCCAGCAGCAGCGC
CAAGGCCAAGGAAACTCAAGGACGCGCCAGCAGTTCGACGTCCACAGCAA
GCAAGCGAAAGTCCGAAGAACCAACAGCGCCCTCTGGCAATAAATCAAAA
CGTACCACAGATGCGGAGCAGGACACCATTCCCGTTTCAGGATCTACCGG
ATTCGATCGCGGCCTGGAGGCCGAAAAGATCTTGGGTGCCTCCGACAATA
ATGGCCGCCTGACATTCCTCATTCAGTTCAAAGGCGTGGACCAAGCAGAA
ATGGTGCCCTCCTCAGTGGCCAATGAAAAAATCCCACGAATGGTAATCCA
CTTCTACGAAGAGCGCCTATCCTGGTACTCTGATAATGAAGATTAAACAG
TTGGATCATCGAAAGCGAAAAAGAACGATTATACATTTAACGAAAAATTA
CCCACTTAGAATTATAGCTCCTTGCAGGCGCTTTCAAAACCACCCAACCA
ACTCTTAAGGCATCGGACTTTTTTCCATAAATGTCCAGAGTCAGTGTCTG
TATTTATGATAACCATTTTCAATAAATAAAAAAAACCTTTATTCTGCTGG
AGCCTAAAAAAAAAAAAAAAAAAAAA

LD10408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-RA 1180 Su(var)205-RA 143..1148 1..1006 5030 100 Plus
Su(var)205-RB 1257 Su(var)205-RB 375..1225 156..1006 4255 100 Plus
Su(var)205-RB 1257 Su(var)205-RB 103..259 1..157 785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8208604..8209085 1005..526 2345 99.6 Minus
chr2L 23010047 chr2L 8209959..8210115 157..1 785 100 Minus
chr2L 23010047 chr2L 8209707..8209843 292..156 685 100 Minus
chr2L 23010047 chr2L 8209333..8209455 527..405 615 100 Minus
chr2L 23010047 chr2L 8209529..8209648 407..288 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:56:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8209625..8210105 1006..526 2405 100 Minus
2L 23513712 2L 8210979..8211135 157..1 785 100 Minus
2L 23513712 2L 8210727..8210863 292..156 685 100 Minus
2L 23513712 2L 8210353..8210475 527..405 615 100 Minus
2L 23513712 2L 8210549..8210668 407..288 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8209625..8210105 1006..526 2405 100 Minus
2L 23513712 2L 8210979..8211135 157..1 785 100 Minus
2L 23513712 2L 8210727..8210863 292..156 685 100 Minus
2L 23513712 2L 8210353..8210475 527..405 615 100 Minus
2L 23513712 2L 8210549..8210668 407..288 600 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:51:29 has no hits.

LD10408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:52:52 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8209333..8209453 407..527 100 <- Minus
chr2L 8209530..8209646 290..406 100 <- Minus
chr2L 8209710..8209841 158..289 100 <- Minus
chr2L 8209959..8210115 1..157 100   Minus
chr2L 8208604..8209083 528..1005 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:47 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 1..621 176..796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:29 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 1..621 176..796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:37 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..621 176..796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:24 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RB 1..621 176..796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:43:08 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..621 176..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:14 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..968 3..970 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:29 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..1003 3..1005 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:37 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..992 14..1005 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:24 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..968 3..970 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:43:08 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)205-RA 1..992 14..1005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:52:52 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8209626..8210103 528..1005 100 <- Minus
2L 8210353..8210473 407..527 100 <- Minus
2L 8210550..8210666 290..406 100 <- Minus
2L 8210730..8210861 158..289 100 <- Minus
2L 8210979..8211135 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:52:52 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8209626..8210103 528..1005 100 <- Minus
2L 8210353..8210473 407..527 100 <- Minus
2L 8210550..8210666 290..406 100 <- Minus
2L 8210730..8210861 158..289 100 <- Minus
2L 8210979..8211135 1..157 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:52:52 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8209626..8210103 528..1005 100 <- Minus
2L 8210353..8210473 407..527 100 <- Minus
2L 8210550..8210666 290..406 100 <- Minus
2L 8210730..8210861 158..289 100 <- Minus
2L 8210979..8211135 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:37 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8209626..8210103 528..1005 100 <- Minus
arm_2L 8210353..8210473 407..527 100 <- Minus
arm_2L 8210550..8210666 290..406 100 <- Minus
arm_2L 8210730..8210861 158..289 100 <- Minus
arm_2L 8210979..8211135 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:39 Download gff for LD10408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8210979..8211135 1..157 100   Minus
2L 8209626..8210103 528..1005 100 <- Minus
2L 8210353..8210473 407..527 100 <- Minus
2L 8210550..8210666 290..406 100 <- Minus
2L 8210730..8210861 158..289 100 <- Minus

LD10408.pep Sequence

Translation from 175 to 795

> LD10408.pep
MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE
TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR
ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE
KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW
YSDNED*

LD10408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15276-PA 210 GF15276-PA 1..210 1..206 726 72.6 Plus
Dana\GF19189-PA 227 GF19189-PA 3..154 23..202 390 43.3 Plus
Dana\GF16710-PA 231 GF16710-PA 5..133 21..195 270 34.7 Plus
Dana\GF22550-PA 367 GF22550-PA 161..240 22..101 157 38.8 Plus
Dana\GF13301-PA 132 GF13301-PA 7..110 89..198 152 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23468-PA 205 GG23468-PA 1..205 1..206 930 92.2 Plus
Dere\GG18283-PA 238 GG18283-PA 3..154 23..202 396 43.9 Plus
Dere\GG16196-PA 170 GG16196-PA 1..161 1..200 273 33 Plus
Dere\GG11164-PA 237 GG11164-PA 5..139 21..202 252 32.2 Plus
Dere\GG24367-PA 106 GG24367-PA 16..82 142..206 185 50.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10251-PA 203 GH10251-PA 1..203 1..206 703 69.4 Plus
Dgri\GH17802-PA 215 GH17802-PA 3..153 23..202 399 45 Plus
Dgri\GH18923-PA 238 GH18923-PA 5..133 21..195 239 31.2 Plus
Dgri\GH16158-PA 392 GH16158-PA 9..60 24..75 157 59.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-PB 206 CG8409-PB 1..206 1..206 1059 100 Plus
Su(var)205-PA 206 CG8409-PA 1..206 1..206 1059 100 Plus
HP1b-PB 240 CG7041-PB 3..154 23..202 395 44.4 Plus
HP1b-PC 240 CG7041-PC 3..154 23..202 395 44.4 Plus
HP1b-PA 240 CG7041-PA 3..154 23..202 395 44.4 Plus
HP1c-PA 237 CG6990-PA 3..134 19..196 252 31.8 Plus
HP1e-PA 174 CG8120-PA 22..166 19..201 239 31.1 Plus
HP6-PA 106 CG15636-PA 4..83 127..206 184 45 Plus
rhi-PA 418 CG10683-PA 1..126 1..121 163 33.1 Plus
Pc-PA 390 CG32443-PA 26..131 24..115 159 34.9 Plus
Oxp-PA 84 CG18186-PA 12..71 14..72 141 45 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15430-PA 226 GI15430-PA 1..226 1..206 736 70.4 Plus
Dmoj\GI15142-PA 211 GI15142-PA 3..154 23..202 397 44.4 Plus
Dmoj\GI20276-PA 180 GI20276-PA 3..149 23..203 332 39.2 Plus
Dmoj\GI24000-PA 171 GI24000-PA 11..162 14..198 325 38.4 Plus
Dmoj\GI23231-PA 234 GI23231-PA 5..133 21..195 256 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19396-PA 205 GL19396-PA 1..205 1..206 751 79.4 Plus
Dper\GL12976-PA 266 GL12976-PA 3..152 23..201 365 41.3 Plus
Dper\GL23765-PA 229 GL23765-PA 5..141 21..204 259 32.4 Plus
Dper\GL15653-PA 133 GL15653-PA 2..85 112..200 175 45.1 Plus
Dper\GL13026-PA 310 GL13026-PA 141..271 71..201 164 32.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\HP1A-PA 205 GA21056-PA 1..205 1..206 751 79.4 Plus
Dpse\HP1B-PA 234 GA20053-PA 3..152 23..201 363 41.3 Plus
Dpse\HP1C-PA 229 GA20011-PA 5..141 21..204 261 32.4 Plus
Dpse\GA26074-PA 140 GA26074-PA 2..85 112..200 171 46.2 Plus
Dpse\GA29223-PA 140 GA29223-PA 2..85 112..200 166 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13138-PA 206 GM13138-PA 1..206 1..206 1047 96.6 Plus
Dsec\GM13712-PA 240 GM13712-PA 3..153 23..201 397 44.1 Plus
Dsec\GM23793-PA 176 GM23793-PA 22..169 19..204 262 33.3 Plus
Dsec\GM26466-PA 237 GM26466-PA 5..139 21..202 252 31.7 Plus
Dsec\GM18083-PA 99 GM18083-PA 25..81 142..198 200 61.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22433-PA 206 GD22433-PA 1..206 1..206 1043 96.1 Plus
Dsim\GD16926-PA 240 GD16926-PA 3..153 23..201 400 44.7 Plus
Dsim\GD18604-PA 176 GD18604-PA 1..166 1..201 258 30.9 Plus
Dsim\GD20982-PA 237 GD20982-PA 5..139 21..202 251 31.7 Plus
Dsim\HP6-PA 112 GD22699-PA 25..93 142..206 197 53.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Su(var)205-PA 213 GJ17281-PA 1..213 1..206 764 75.2 Plus
Dvir\GJ22004-PA 183 GJ22004-PA 3..152 23..203 325 40.3 Plus
Dvir\GJ23632-PA 174 GJ23632-PA 1..160 5..198 311 38.1 Plus
Dvir\GJ22891-PA 235 GJ22891-PA 5..141 21..204 272 33 Plus
Dvir\GJ19002-PA 128 GJ19002-PA 13..73 142..202 219 59 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14980-PA 205 GK14980-PA 1..205 1..206 673 72.5 Plus
Dwil\GK16242-PA 277 GK16242-PA 3..156 23..202 381 43.9 Plus
Dwil\GK13747-PA 176 GK13747-PA 16..176 15..199 358 45.2 Plus
Dwil\GK11473-PA 239 GK11473-PA 5..139 21..202 267 33.9 Plus
Dwil\GK15187-PA 369 GK15187-PA 15..163 22..206 262 34.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Su(var)205-PA 205 GE11133-PA 1..205 1..206 986 94.2 Plus
Dyak\GE15815-PA 240 GE15815-PA 3..154 23..202 396 43.9 Plus
Dyak\GE25940-PA 173 GE25940-PA 1..164 1..200 261 31.5 Plus
Dyak\GE10331-PA 238 GE10331-PA 5..139 21..202 252 32.2 Plus
Dyak\GE14704-PA 108 GE14704-PA 15..74 141..200 205 56.7 Plus

LD10408.hyp Sequence

Translation from 175 to 795

> LD10408.hyp
MGKKIDNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPE
TENTWEPENNLDCQDLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQGR
ASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGSTGFDRGLEAE
KILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSW
YSDNED*

LD10408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)205-PB 206 CG8409-PB 1..206 1..206 1059 100 Plus
Su(var)205-PA 206 CG8409-PA 1..206 1..206 1059 100 Plus
HP1b-PB 240 CG7041-PB 3..154 23..202 395 44.4 Plus
HP1b-PC 240 CG7041-PC 3..154 23..202 395 44.4 Plus
HP1b-PA 240 CG7041-PA 3..154 23..202 395 44.4 Plus