Clone LD10434 Report

Search the DGRC for LD10434

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:34
Vector:pBS SK-
Associated Gene/TranscriptCG6769-RA
Protein status:LD10434.pep: gold
Preliminary Size:1351
Sequenced Size:1451

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6769 2001-01-01 Release 2 assignment
CG6769 2001-10-10 Blastp of sequenced clone
CG6769 2003-01-01 Sim4 clustering to Release 3
CG6769 2008-04-29 Release 5.5 accounting
CG6769 2008-08-15 Release 5.9 accounting
CG6769 2008-12-18 5.12 accounting

Clone Sequence Records

LD10434.complete Sequence

1451 bp (1451 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061122

> LD10434.complete
TTTTTTAATCATCACCATTAAATTGAGCAGCCTTACTTTCCATTGTGAAA
TACGCCATTCCAGAGTGCCAACGAAAACGAGAGTGCCAGTCAAGCGATCA
TCGAATCCACTCAGCGCCACAATGTCGCACTTCACCTGCCTGAACTGCGA
TGCCCGCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACT
GGCATCGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACG
GCCGAGGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGC
GGCACTCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCC
AATTCGCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCAC
AAGGAGCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGG
CAGCGCCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGC
GGCCCCATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCC
TTCGCGGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGA
GGACGACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATG
AGTGGGACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTC
TGCACACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGT
GGCGCACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGG
GCCTTCTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTG
TTCTGCAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAA
ACACATGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGC
TGGCCGAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAAT
AATGAGGGCATGGACATTGACGAAGAGGTGGTGCCGGATCTGCTCGATGG
CGATGAGTATCAGCTGGTGCTGCCCTCAGGCGCGGTCATTGGTCATCGCT
CCCTGCTTCGCTACTACAAGCAGCGTCTTCGTCCGGAACGCGCCGTCGTC
ATCAAGAAGTCCGACCGCAAACTGCACCGCGTGCTCAGCGAGTACCGGGC
TCTGGGCTGGACGCAAACGCAGCAGCTGTCCGCCGCCCGCAAGGCACGCG
ACATTCATCTGATGAAGCGCGTCCAGTCCAAGTGGCAGATGAAGCTCGGC
TGCAAGGCCAATAAGCTGCAGAAGCACTATCGTGCACAGGTTCTGATCTA
ATCATCGCTTGCTTTTCTTTCCAAATGCTATTGGCCTCCCCCCTACTTGT
ACAATAAAAAGTTTTTGAGTTTTGCTTAAAAAAAAAAAAAAAAAAAAAAA
A

LD10434.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RA 1617 CG6769-RA 116..1545 1..1430 7150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17750388..17751026 1..639 3195 100 Plus
chrX 22417052 chrX 17751619..17752045 1001..1427 2135 100 Plus
chrX 22417052 chrX 17751181..17751545 636..1000 1825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861043..17861681 1..639 3195 100 Plus
X 23542271 X 17862274..17862703 1001..1430 2150 100 Plus
X 23542271 X 17861836..17862200 636..1000 1825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17869141..17869779 1..639 3195 100 Plus
X 23527363 X 17870372..17870801 1001..1430 2150 100 Plus
X 23527363 X 17869934..17870298 636..1000 1825 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:23:32 has no hits.

LD10434.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:24:11 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17750388..17751024 1..637 100 -> Plus
chrX 17751183..17751545 638..1000 100 -> Plus
chrX 17751619..17752045 1001..1427 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:50 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 122..1351 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:30 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 122..1351 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:01:55 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 122..1351 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:32 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 122..1351 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:29:49 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 122..1351 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:13 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 116..1542 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:30 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 116..1542 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:01:55 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 42..1468 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:32 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 116..1542 1..1427 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:29:49 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 42..1468 1..1427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:11 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
X 17861043..17861679 1..637 100 -> Plus
X 17861838..17862200 638..1000 100 -> Plus
X 17862274..17862700 1001..1427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:11 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
X 17861043..17861679 1..637 100 -> Plus
X 17861838..17862200 638..1000 100 -> Plus
X 17862274..17862700 1001..1427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:11 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
X 17861043..17861679 1..637 100 -> Plus
X 17861838..17862200 638..1000 100 -> Plus
X 17862274..17862700 1001..1427 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:01:55 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755076..17755712 1..637 100 -> Plus
arm_X 17755871..17756233 638..1000 100 -> Plus
arm_X 17756307..17756733 1001..1427 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:38 Download gff for LD10434.complete
Subject Subject Range Query Range Percent Splice Strand
X 17869141..17869777 1..637 100 -> Plus
X 17869936..17870298 638..1000 100 -> Plus
X 17870372..17870798 1001..1427 100   Plus

LD10434.hyp Sequence

Translation from 0 to 1350

> LD10434.hyp
FLIITIKLSSLTFHCEIRHSRVPTKTRVPVKRSSNPLSATMSHFTCLNCD
ARFASADVQRNHYKTDWHRYNLKRRVAQLPPVTAEEFQQRVLSARSATDA
ALEEQNLSVYCHACRRQFASQKAHDNHLNSRKHKELLARFEREQMTASGG
SASTATSVCTRSVVEQRPHPALAAAAAGKGRLAFAERVVKANNDEEMVDE
DDDDFEDIEEEEVDSDEWDKIPENPLTERDCLFCTHASEDLVENLKHMSV
AHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRGKTFYSLDAVRK
HMIDKGHCQMLHEGVALAEYAEYYDYSSSYPDNNEGMDIDEEVVPDLLDG
DEYQLVLPSGAVIGHRSLLRYYKQRLRPERAVVIKKSDRKLHRVLSEYRA
LGWTQTQQLSAARKARDIHLMKRVQSKWQMKLGCKANKLQKHYRAQVLI*

LD10434.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PB 409 CG6769-PB 1..409 41..449 2163 100 Plus
CG6769-PA 409 CG6769-PA 1..409 41..449 2163 100 Plus

LD10434.pep Sequence

Translation from 121 to 1350

> LD10434.pep
MSHFTCLNCDARFASADVQRNHYKTDWHRYNLKRRVAQLPPVTAEEFQQR
VLSARSATDAALEEQNLSVYCHACRRQFASQKAHDNHLNSRKHKELLARF
EREQMTASGGSASTATSVCTRSVVEQRPHPALAAAAAGKGRLAFAERVVK
ANNDEEMVDEDDDDFEDIEEEEVDSDEWDKIPENPLTERDCLFCTHASED
LVENLKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRGK
TFYSLDAVRKHMIDKGHCQMLHEGVALAEYAEYYDYSSSYPDNNEGMDID
EEVVPDLLDGDEYQLVLPSGAVIGHRSLLRYYKQRLRPERAVVIKKSDRK
LHRVLSEYRALGWTQTQQLSAARKARDIHLMKRVQSKWQMKLGCKANKLQ
KHYRAQVLI*

LD10434.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21415-PA 410 GF21415-PA 1..410 1..409 1797 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19137-PA 409 GG19137-PA 1..409 1..409 2167 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12142-PA 407 GH12142-PA 1..407 1..409 1771 80.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PB 409 CG6769-PB 1..409 1..409 2163 100 Plus
CG6769-PA 409 CG6769-PA 1..409 1..409 2163 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16198-PA 400 GI16198-PA 1..400 1..409 1677 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14756-PA 409 GL14756-PA 1..409 1..409 1667 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19851-PA 409 GA19851-PA 1..409 1..409 1667 85.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22862-PA 409 GM22862-PA 1..409 1..409 2184 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17371-PA 409 GD17371-PA 1..409 1..409 2173 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15890-PA 403 GJ15890-PA 1..403 1..409 1663 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25039-PA 403 GK25039-PA 1..403 1..409 1709 84.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17694-PA 410 GE17694-PA 1..410 1..409 2156 97.6 Plus