Clone LD10453 Report

Search the DGRC for LD10453

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:53
Vector:pBS SK-
Associated Gene/TranscriptLnk-RA
Protein status:LD10453.pep: gold
Preliminary Size:2833
Sequenced Size:2934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17367 2001-01-01 Release 2 assignment
CG17367 2001-11-29 Blastp of sequenced clone
CG17367 2003-01-01 Sim4 clustering to Release 3
Lnk 2008-04-29 Release 5.5 accounting
Lnk 2008-08-15 Release 5.9 accounting
Lnk 2008-12-18 5.12 accounting

Clone Sequence Records

LD10453.complete Sequence

2934 bp (2934 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069404

> LD10453.complete
TCGATTTTCGTCCGGCTCTAATTTTCACGGTCGAGGTTTTTTCGTTTTAA
ATCGCAAAAAACACAAACAAATCAGTGATAAATAATATTGCAACCAGACG
GTAGCTCAAGCGGAACTGGCAACCAATGATTACGAATTAACAACAAACAA
GTCGCTTTTGAAACGGACTCCAGCTGGGTAACTCGTGTGGCAAACTGAAC
CGGAACCGGCAGAGGCAGCGGCAGCAGGAGCAGGAGGAGGACCTGGACCA
GCGGAACTGGCAACCACCTGGCCAAATGGGTGGCAATAGCACAGGAGCGA
ATACGAGCGCCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGC
AGTCATCACAGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGG
AAGTGACCTGATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGT
CTTCGTATGCATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACAC
GCCAGAGTGGCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAA
TGGCAATCTGCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTG
CTCAGAAATTTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTC
AAGCGGAGGAGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGA
GGAGCACGAGGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTAT
CATTCAAAGGACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGAT
GACTTGGATGGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGC
CAAGATCGTTGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGC
CGGAAAGTCTGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGA
CTTGTACTGGTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCC
GCACAAGGCGACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGG
AGGCTCGCGAAACAACGGCACTTGAGATGCCGGACAGGCTGAACACATTC
GTCCTCAAGGCAGACAACAACATGGAGTATGTGATTGAGGCGGAGAGCGC
GGAGGAGATGCGGAGTTGGCTAGCCACAATACGGTACTGCATGCGAACGC
CACCCACTCAGCAGCCAACGATCGAGTCGGATGGTGTTATGGCGTCCGCC
ATGCAAACATCGCCGACACTTCCGAGTCCCAATCCCATTGGTGGGATTCA
GAATCCGCAGTACCAGCAGCAGCGCGGCTCGAATGGCAATCTGGTGGGAG
GTGGAGCTCCGCTCACCTCATCGCTGTCTGCAGACAGTGCTTTGGGCCAG
GGAGGAGCCACTTCTGCCAGCGAACTAAATGTCATCAACGAATTGGGCAC
CTCACCGACCTCCGGGCCACCTGACATACCTGTAAGACCCCATCGAGGTG
AACAGCGCCTGTCCGCCTCAAGCAACTTCGATGGCATCGAGGGCACGGAA
AATGATGCAGATGTGGCGGATCTGACGGCTGAGATGAGCGTGTTTCCCTG
GTTCCACGGCACACTGACGCGATCAGAAGCTGCCAGAATGGTACTCCATT
CGGATGCAGCCGGACATGGATACTTTTTGGTGCGACAGAGCGAAACGCGC
CGCGGCGAGTTCGTTCTGACCTTTAACTTCCAAGGACGAGCCAAGCATTT
GCGGCTCACCATTTCGGAGAAGGGTCAGTGTCGGGTGCAGCACCTGTGGT
TTCCCTCGATCCAGGAAATGCTCGAACACTTCCGCCACAACCCGATACCA
CTGGAATCGGGCGGCACTTCGGATGTGACTCTTACCGAATGGGTGCACTC
ACACAGCAGACTGAATGACCCGACGACGGCAGCAAATCATGACTCAGGAC
AACTCAACGATCTTTCGACAAATGGGAATGGCAATGGGAACGGCAATGGC
TACGATAATGGTCAGGGTTCATCGACGGCATCGAATGCGGCGGGAGGAAC
TGCATCGGGAGCTGCTGGCGGTGGCCATCCGTCGCCGAGACATTGCAACG
AAGTGATTACCATGAATTTGAGTGTTCGCCTAAAGACAAATGAAATCGAA
CTGCCACAGGAGCCAACACACGTCTATTTTCCGGAGCAAGTCTATTTCCA
TTTGGATCCCACAACGCTAACAGTGCACGGATCACCGCCACCGGCCCAGA
ATTTCCTGGACCAGCCACATCTGCGGGCTTCGAACGCCTCCCTTCAGGCA
GCTGCCCACCATCAGGCGGGTTCCTCCGGCAACCGGCATCCCAGCGATGG
CGGCAGCAACAGCGGCGGAGCAGGAGGCGGATCGGGATCCAGTGGAGGAG
CCGAGTGCACCGGACGGGCCGTCGATAATCAGTACAGCTTCACCTAAGTC
CGCGCGATCGATCATCAACTGCATTTCGCGGCTTAACCAGCGGAACTTTA
CTTTTGTGCCATTTTAATCATTGTCCTAAAGGAGAGGAAAATTGTGTTTT
TTTTCGCATCAATGTGCGTTCTTTGCTTTCTTGATTCACTTGTTTCTATT
TTAGTTAGTACCTCTTTTGGAAGACATGAAGTAACTGAACATTATTATGT
ATACATTATATAGCTAAATGTGTGTGTTCATTTTAAGTACATCAATGTTG
TATGTATAGAAAAGAAGAACCTAAAAAAAAAAAAACGCAAAAGAAAATTG
TACGATTTTTGTGGGCACCAAAGGTGCGACTCATGCGAATCCTAAAACTT
CCTGCTTTACAAAACAAAAATACATACATATATACCATACTTATAAATAT
AAATTATATATACATAAATATATATTGAAATTGGTAAACTACAATAAATG
AAGTTATGTAAAAGTAAAAAAAAAAAAAAAAAAA

LD10453.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RB 2994 Lnk-RB 73..2990 1..2918 14590 100 Plus
Lnk.b 3222 Lnk.b 420..2360 153..2093 9705 100 Plus
Lnk.a 3167 Lnk.a 987..2305 775..2093 6595 100 Plus
Lnk.a 3167 Lnk.a 2338..3163 2093..2918 4130 100 Plus
Lnk.b 3222 Lnk.b 2393..3218 2093..2918 4130 100 Plus
Lnk.a 3167 Lnk.a 350..973 153..776 3120 100 Plus
Lnk.a 3167 Lnk.a 3..154 1..152 760 100 Plus
Lnk.b 3222 Lnk.b 73..224 1..152 760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21713681..21714999 775..2093 6535 99.7 Plus
chr3R 27901430 chr3R 21715410..21716232 2090..2915 3975 99 Plus
chr3R 27901430 chr3R 21712620..21713244 153..777 3065 99.4 Plus
chr3R 27901430 chr3R 21711511..21711662 1..152 745 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25890716..25892034 775..2093 6595 100 Plus
3R 32079331 3R 25892445..25893273 2090..2918 4130 99.9 Plus
3R 32079331 3R 25889655..25890279 153..777 3125 100 Plus
3R 32079331 3R 25888545..25888696 1..152 760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25631547..25632865 775..2093 6595 100 Plus
3R 31820162 3R 25633276..25634104 2090..2918 4130 99.8 Plus
3R 31820162 3R 25630486..25631110 153..777 3125 100 Plus
3R 31820162 3R 25629376..25629527 1..152 760 100 Plus
Blast to na_te.dros performed 2019-03-16 10:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 615..766 2688..2542 162 61.9 Minus
TART-A 13424 TART-A 13424bp 368..475 2295..2407 138 64.3 Plus
TART-A 13424 TART-A 13424bp 11546..11653 2295..2407 138 64.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..202 337..405 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9232 337..405 118 66.7 Plus

LD10453.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:41 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21711511..21711662 1..152 99 -> Plus
chr3R 21712620..21713243 153..776 99 -> Plus
chr3R 21713683..21714999 777..2093 99 -> Plus
chr3R 21715414..21716136 2094..2819 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:53 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 1..2172 276..2447 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:00 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 1..2172 276..2447 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:14 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 1..2172 276..2447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:36 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 1..2172 276..2447 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:04 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 1..2172 276..2447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:57:55 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1..2912 4..2915 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:00 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1..2912 4..2915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:14 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 4..2918 1..2915 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:37 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1..2912 4..2915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:04 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 4..2918 1..2915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:41 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25888545..25888696 1..152 100 -> Plus
3R 25889655..25890278 153..776 100 -> Plus
3R 25890718..25892034 777..2093 100 -> Plus
3R 25892449..25893270 2094..2915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:41 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25888545..25888696 1..152 100 -> Plus
3R 25889655..25890278 153..776 100 -> Plus
3R 25890718..25892034 777..2093 100 -> Plus
3R 25892449..25893270 2094..2915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:41 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25888545..25888696 1..152 100 -> Plus
3R 25889655..25890278 153..776 100 -> Plus
3R 25890718..25892034 777..2093 100 -> Plus
3R 25892449..25893270 2094..2915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:14 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21714267..21714418 1..152 100 -> Plus
arm_3R 21715377..21716000 153..776 100 -> Plus
arm_3R 21716440..21717756 777..2093 100 -> Plus
arm_3R 21718171..21718992 2094..2915 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:00 Download gff for LD10453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25630486..25631109 153..776 100 -> Plus
3R 25631549..25632865 777..2093 100 -> Plus
3R 25633280..25634101 2094..2915 100   Plus
3R 25629376..25629527 1..152 100 -> Plus

LD10453.pep Sequence

Translation from 275 to 2446

> LD10453.pep
MGGNSTGANTSAFSAGGYIGPTSASSHHSLGTSSAAAAAAAGSDLIPAPI
GTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLPPEEA
RNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLL
SKSLLRRLSFKGLRKGKAFFHKNSDDLDGSGGSGKQSKTKLAKIVVECRK
EGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYMLEFYTPHKATKPRS
GVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLA
TIRYCMRTPPTQQPTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQR
GSNGNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPD
IPVRPHRGEQRLSASSNFDGIEGTENDADVADLTAEMSVFPWFHGTLTRS
EAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKG
QCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT
TAANHDSGQLNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGG
HPSPRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTV
HGSPPPAQNFLDQPHLRASNASLQAAAHHQAGSSGNRHPSDGGSNSGGAG
GGSGSSGGAECTGRAVDNQYSFT*

LD10453.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16779-PA 719 GF16779-PA 1..719 1..723 3008 84.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11431-PA 727 GG11431-PA 1..727 1..723 3744 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22307-PA 744 GH22307-PA 17..744 17..723 2445 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-PA 723 CG17367-PA 1..723 1..723 3807 100 Plus
Lnk-PB 723 CG17367-PB 1..723 1..723 3807 100 Plus
Lnk-PC 723 CG17367-PC 1..723 1..723 3807 100 Plus
Lnk-PD 728 CG17367-PD 1..728 1..723 3791 99.3 Plus
Lnk-PF 608 CG17367-PF 1..606 1..606 3178 100 Plus
Lnk-PE 613 CG17367-PE 1..611 1..606 3162 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22976-PA 723 GI22976-PA 1..723 1..723 2466 67.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21796-PA 722 GL21796-PA 18..722 17..723 2651 77.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14482-PA 718 GA14482-PA 18..718 17..723 2645 77.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10272-PA 724 GM10272-PA 1..724 1..723 3819 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21241-PA 723 GD21241-PA 1..723 1..723 3832 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22738-PA 765 GJ22738-PA 41..765 1..723 2479 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12864-PA 769 GK12864-PA 1..769 1..723 2605 71.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23626-PA 731 GE23626-PA 1..731 1..723 3760 97.1 Plus

LD10453.hyp Sequence

Translation from 275 to 2446

> LD10453.hyp
MGGNSTGANTSAFSAGGYIGPTSASSHHSLGTSSAAAAAAAGSDLIPAPI
GTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLPPEEA
RNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLL
SKSLLRRLSFKGLRKGKAFFHKNSDDLDGSGGSGKQSKTKLAKIVVECRK
EGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYMLEFYTPHKATKPRS
GVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLA
TIRYCMRTPPTQQPTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQR
GSNGNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPD
IPVRPHRGEQRLSASSNFDGIEGTENDADVADLTAEMSVFPWFHGTLTRS
EAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKG
QCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT
TAANHDSGQLNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGG
HPSPRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTV
HGSPPPAQNFLDQPHLRASNASLQAAAHHQAGSSGNRHPSDGGSNSGGAG
GGSGSSGGAECTGRAVDNQYSFT*

LD10453.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-PA 723 CG17367-PA 1..723 1..723 3807 100 Plus
Lnk-PB 723 CG17367-PB 1..723 1..723 3807 100 Plus
Lnk-PC 723 CG17367-PC 1..723 1..723 3807 100 Plus
Lnk-PD 728 CG17367-PD 1..728 1..723 3791 99.3 Plus
Lnk-PF 608 CG17367-PF 1..606 1..606 3178 100 Plus