Clone LD10456 Report

Search the DGRC for LD10456

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:56
Vector:pBS SK-
Associated Gene/TranscriptTif-IA-RA
Protein status:LD10456.pep: gold
Preliminary Size:2265
Sequenced Size:2112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3278 2001-01-01 Release 2 assignment
CG16938 2001-01-01 Release 2 assignment
CG3278 2001-10-10 Blastp of sequenced clone
CG3278 2003-01-01 Sim4 clustering to Release 3
Tif-IA 2008-04-29 Release 5.5 accounting
Tif-IA 2008-08-15 Release 5.9 accounting
Tif-IA 2008-12-18 5.12 accounting

Clone Sequence Records

LD10456.complete Sequence

2112 bp (2112 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061123

> LD10456.complete
AAACAACGTGCATATTTCCAAGTAAAATTCTTACGATTTGTGCTTTAAAA
ATAAAAATGAAATTCTCTTTCAAAAATAATTTATTATCTAGAACTTATTT
GTATGCATTTTACGTCAGTGTGGATTATCCTTTCGAACATTAAGTTCAAA
CAGAAATAAAGCTATTATTAATTTAATATGTCCTTCTACACGAGTAAGAC
GGATGTGACTTCCATTTTAAAGACGTTTTCTGGCGTAAAACGAAATCAGG
CAAATGCCGTGGCCATCAACAAAGTTCGATTTTCCACACCCAAAGAGAAG
GGGCTCGCAGAATCAGTGCGCGTTGCCCTAGAAGAACGAAATTTCCATCT
GGTCAAGGAGTTCACATACTTCCTCCGGGAAGCAGAACTCAGCGATGATG
AGGTTGTAATAATCATAAAAGATGCTAAACGAATTGTTCATAATTTGACT
CCAGAATTTGTAACCGTTGTCGAGGCGTTACTGTCCCTTAACTGGAAGAA
AAGAAGTTCAGAGATAATCGAAGCTTATACTGAATTTTGTATCGAACTAA
TGGTGACCCATAATAGATATTTACCGATTGGAGTCTCTAAACTAATTGTC
CACTGGATTCCTGGAGATATGGATGAATCCGATTGGGTCCACGGATGCCC
TTCGGAGCACGTGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATC
GCATCTTAACTGCCGTGCCAATGGCTTTCGATATTATCATAGATGCCATA
TCCGCCAAATTCCCCTATTTCAAAAAGCCGTACCATGTGACGGCAGGGTA
TCTGTATAACGTGCTTTGGTTATTAGAATACAAGCCTATTTTCGAAGAAC
TTGTTTTTCAACTAGTTTTACAAAAGCTTTTATTATTAGATGTTAATGCT
CCAAAAGATGAAATTGAATTAGAAATGAATGATGAGGAGGAAAAGGTGGA
AGCGGACACCTTGTTTGAAATCGACGATGTATGCGCCGAAAATGTACCCA
AATCTGAAAAATCTGTGAGTCATCCTGTTGGCAAAACCTTGGATGTATGC
CTATTCTTGCTTTATAAGTTTTTTGATGGCAAATGTCGCCTTAATGAAAA
TAGTAGCGAAGAACAGCGAAGGACTGCCAACCGATTGTTTAAGATGTTAC
TTTATTTGTTCGACGAGGTGTTATTGCCCAGCCACAACACGCATCATGTG
CAATTCATCCTATTTTATGCAACTAGTCTGCGGTCGGTATATTCCGAAGC
TTTTCTTGATTCCTTATGGACGAAAGTCCAAAATCCGAATGTATCCGCTG
TAATTCGACATGCTGCGGTGGGATACATGGCTAGCTTTTTATCTCGCGCA
CGATTTTTGCCGCTTAGCACTGTTACTTTCTACCTAAAAGAGTTGACAAG
GTGGGCTCATACATACATAGATGACTCCGATGCATATAAGCAGAACTGCT
CTCTGAAAGCCAATTTGGTTTTCTATTCTGTTTGCCAAGCTGTGTTTTAT
TTAATTGCATTTCGCGCAAAAGATTTGACGGCCAGTTCAAAAGATTTGCT
CTTCCTCCAATCCCTCCAACTATCGCGCCTTGCTATGTGTCATTTAAATC
CCCTGCGGTATTGTTTAGCCCCAGTGGCCACAGCATTTGCTGGTGTTACA
AGAACTTACCAGCTGGCCTATTGTCATACTGTTTTGGAGCGCAACGCTCG
CCGTAAACTGGCTACAGTTTACGGTCATGAAAAATGCATGCCCGATGAGA
CGCTGGAATCGTTTTTTCCCTTCGATCCTTATGTACTTAAGTTATCAAAA
AAATATATTGAGACTAATTATATGGTTTACCAGAGCAATGACACGGATGA
GTATGTCTATGGGTCTAACAAATACGGGCATTCTAGGAAACGTGGTGACT
CTGAAATGCTAGAGGAAGACGAATTCCTAATTGTCGACAAACGTCCAAAG
AATTTTGATCTGTCTAAAAGTCAGGAATTTGACAAACAATTTCATTTCGG
ATCTTCGCCATGATTTTACGAATAAGTCGTATTTGTTCAAAATTACTTAT
AAAAAAGAAATTATAAATGCAATAAATTTTTTACTCTGGGTTGCAAAAAA
AAAAAAAAAAAA

LD10456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA.h 2507 Tif-IA.h 62..2156 1..2095 10475 100 Plus
Tif-IA-RA 2243 Tif-IA-RA 62..2156 1..2095 10475 100 Plus
Tif-IA.d 2090 Tif-IA.d 1059..2085 1069..2095 5135 100 Plus
Tif-IA.d 2090 Tif-IA.d 45..1058 1..1014 5070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22251729..22252220 876..1367 2460 100 Plus
chr2L 23010047 chr2L 22248904..22249386 394..876 2415 100 Plus
chr2L 23010047 chr2L 22248454..22248847 1..394 1970 100 Plus
chr2L 23010047 chr2L 22256492..22256792 1794..2094 1505 100 Plus
chr2L 23010047 chr2L 22256183..22256434 1542..1793 1260 100 Plus
chr2L 23010047 chr2L 22252277..22252456 1364..1543 900 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22253194..22253685 876..1367 2460 100 Plus
2L 23513712 2L 22250372..22250854 394..876 2415 100 Plus
2L 23513712 2L 22249922..22250315 1..394 1970 100 Plus
2L 23513712 2L 22257960..22258261 1794..2095 1510 100 Plus
2L 23513712 2L 22257651..22257902 1542..1793 1260 100 Plus
2L 23513712 2L 22253742..22253921 1364..1543 900 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22253194..22253685 876..1367 2460 100 Plus
2L 23513712 2L 22250372..22250854 394..876 2415 100 Plus
2L 23513712 2L 22249922..22250315 1..394 1970 100 Plus
2L 23513712 2L 22257960..22258261 1794..2095 1510 100 Plus
2L 23513712 2L 22257651..22257902 1542..1793 1260 100 Plus
2L 23513712 2L 22253742..22253921 1364..1543 900 100 Plus
Blast to na_te.dros performed 2019-03-16 19:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 4066..4173 198..81 125 61.9 Minus
1360 3409 1360 1360 3409bp 2446..2542 9..107 121 59.6 Plus

LD10456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:09:46 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22248454..22248846 1..393 100 -> Plus
chr2L 22248904..22249385 394..875 100 -> Plus
chr2L 22251729..22252220 876..1367 100 -> Plus
chr2L 22252281..22252456 1368..1543 100 -> Plus
chr2L 22256185..22256434 1544..1793 100 -> Plus
chr2L 22256492..22256792 1794..2094 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:54 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 178..2013 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:09 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 178..2013 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:38 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 178..2013 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:55 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 178..2013 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:42 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 1..1836 178..2013 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:52 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 45..2138 1..2094 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:09 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 45..2138 1..2094 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:38 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 47..2140 1..2094 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:55 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 45..2138 1..2094 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:42 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
Tif-IA-RA 47..2140 1..2094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:46 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22257960..22258260 1794..2094 100   Plus
2L 22249922..22250314 1..393 100 -> Plus
2L 22250372..22250853 394..875 100 -> Plus
2L 22253194..22253685 876..1367 100 -> Plus
2L 22253746..22253921 1368..1543 100 -> Plus
2L 22257653..22257902 1544..1793 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:46 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22257960..22258260 1794..2094 100   Plus
2L 22249922..22250314 1..393 100 -> Plus
2L 22250372..22250853 394..875 100 -> Plus
2L 22253194..22253685 876..1367 100 -> Plus
2L 22253746..22253921 1368..1543 100 -> Plus
2L 22257653..22257902 1544..1793 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:46 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22257960..22258260 1794..2094 100   Plus
2L 22249922..22250314 1..393 100 -> Plus
2L 22250372..22250853 394..875 100 -> Plus
2L 22253194..22253685 876..1367 100 -> Plus
2L 22253746..22253921 1368..1543 100 -> Plus
2L 22257653..22257902 1544..1793 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:38 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22249922..22250314 1..393 100 -> Plus
arm_2L 22250372..22250853 394..875 100 -> Plus
arm_2L 22253194..22253685 876..1367 100 -> Plus
arm_2L 22253746..22253921 1368..1543 100 -> Plus
arm_2L 22257653..22257902 1544..1793 100 -> Plus
arm_2L 22257960..22258260 1794..2094 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:46 Download gff for LD10456.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22249922..22250314 1..393 100 -> Plus
2L 22250372..22250853 394..875 100 -> Plus
2L 22253194..22253685 876..1367 100 -> Plus
2L 22253746..22253921 1368..1543 100 -> Plus
2L 22257653..22257902 1544..1793 100 -> Plus
2L 22257960..22258260 1794..2094 100   Plus

LD10456.pep Sequence

Translation from 177 to 2012

> LD10456.pep
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSP*

LD10456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22755-PA 608 GF22755-PA 1..603 1..610 2320 69.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21453-PA 615 GG21453-PA 1..611 1..611 2931 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13629-PA 617 GH13629-PA 1..613 1..611 1988 63.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-PA 611 CG3278-PA 1..611 1..611 3178 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11780-PA 617 GI11780-PA 1..613 1..611 2088 64.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21145-PA 596 GL21145-PA 1..592 1..611 2157 67.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17133-PA 609 GA17133-PA 1..605 1..611 2204 68.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18796-PA 615 GM18796-PA 1..610 1..610 3195 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21614-PA 210 GD21614-PA 1..200 1..200 968 92.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13145-PA 617 GJ13145-PA 1..613 1..611 2125 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23990-PA 627 GK23990-PA 1..623 1..611 2216 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Tif-IA-PA 615 GE12956-PA 1..611 1..611 2890 92 Plus

LD10456.hyp Sequence

Translation from 177 to 2012

> LD10456.hyp
MSFYTSKTDVTSILKTFSGVKRNQANAVAINKVRFSTPKEKGLAESVRVA
LEERNFHLVKEFTYFLREAELSDDEVVIIIKDAKRIVHNLTPEFVTVVEA
LLSLNWKKRSSEIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGDMDE
SDWVHGCPSEHVRNELKPIHKVLDRILTAVPMAFDIIIDAISAKFPYFKK
PYHVTAGYLYNVLWLLEYKPIFEELVFQLVLQKLLLLDVNAPKDEIELEM
NDEEEKVEADTLFEIDDVCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFD
GKCRLNENSSEEQRRTANRLFKMLLYLFDEVLLPSHNTHHVQFILFYATS
LRSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYMASFLSRARFLPLSTVT
FYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRAKDL
TASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCH
TVLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIETNYMV
YQSNDTDEYVYGSNKYGHSRKRGDSEMLEEDEFLIVDKRPKNFDLSKSQE
FDKQFHFGSSP*

LD10456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tif-IA-PA 611 CG3278-PA 1..611 1..611 3178 100 Plus