Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD10495.complete Sequence
1929 bp (1929 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061124
> LD10495.complete
TAAAGTCTTCTTATTTGGGATTTTACACATCAATAAAAATATCCAATCAA
TGTGTAAAATTTAAATGATTCTTTTTCTTGCGGCTCATATGTACATTAGA
TCTTTAAAAAGATGTCAAGAAGATGAATTAATCGAGTGGATTGCCTACTT
CTCGGCTTTGGAAAAATTAAATAGATCCGCACAACCTGTTTCCGACTCGA
CCAGGCCAACAAAACTTGGCCAAAAGCACTCCAGAGAGTATATACACATA
TAGAACAAAGCAAACAACGGGTGCGAGTTTTGTTTGCTGACCCCAAAAAA
GAACGCCAGCCGAACAAAAAAAAAAAAAACACTAAAAACACTGGGAAAGT
GGCCAAAAGTGGGCGAGGGCATGGTCTATACGGTCCGTGGTCCCCATATA
GTTTATGGTATTGGGGTTGGTCTGGTGAGTGCGACTGGAAAACGAAACAT
TTCCGGCCTGGACATGAATAATAAAACAAAGCCAACGAGCAGGAAAGATA
GTGTGAAAAGAAAAGGGAGAAATTGTGGATACAAGAGCGACAAAGAAGGG
CATCGAAATAATCAATTTGATGTCGCAAAGTTCGTGGTCGCCCATGCACT
GGAAGAAAAAGAAAAGCCCAGAAGATAACATTTCCAAACTTTTCGACAAT
GCCAACTAAAATAATGTGAGCATTGACCCGATCTTGATGGCGTCTTGATG
ATGTCTTGACCTGATCACGATGGCGATACGATATTCAAATTCTAATTTAC
CATAACATATCTACGATACAGGATTTTCTCTCAGTGTGATTATTGACAGT
GGTCAACCAACCGATGACAGGCAGTCAGTCTGACGTCCACGATGATGATC
ATAATGCGCTAGTGATGTGGACTGTTACTCAACACTTTGCATATTGACTG
CACTGCCACAATGTCTTTGGCGTGCGCCTAATAACGATAATGATGATAGC
GGCGCAAGTGACACACATCAGTCACAAAAACAAACAAGGCCAACACTTCC
TCGTCATTATCATCAACTCTTCGGGGGTGTGCAGCAGCAACACAAAAAAA
GCAATGTAAATCAGTTGAGTGTTAACGAAATGCAAATACCCTAAAAACGG
AATGAACATTTACCACCCAGAATAGAGAAAAGAGTGCTTGTTCTTGGCCT
CGGTCAAAGAAATTTTTAAAAAACGTTGGCCTATCTATTCTATTCCGAAT
ATCTACAGCGTAGCAAATGAAGAGTTGTCCGGTCTTGAATATCGACGAGC
GCCACCTAGCGGAGGATATACGTATTACTCATATTTCCTGACGTCGTTCT
AAAAATCTTCATTTATTTAAAACTTATTTTTTTAACAAATTCTTTTGTTC
TTTTTGGTGATTAGCTAGCTAGTTGAAGTATAGGTAGATGTTTGGAATAC
ATATATTAGATAGAATTGGTAGAATTTGGCCAGAAAATTAGGAAAAAGCA
TTAATAGGGGGGGCGTTCAAAATTTAAATTTCAATATTGCACTGCACTGT
CACTTGAATCTGTAATCTAAGTCCAAATATTCCAGATCATAAAGTTCACG
TTCATACGGACAATCAATAAATTGCTTATGGATAATACAAGCACAATATA
ATTCAATTTTTTATATTTTATGGACTTTAGGTCCGTGTTGAAATAACAAT
TTTTTAAGATATGTGCATACATATTTATGTATATAAAGTAATGTTTATAA
TATATGGTGATTTTGGTTTGGTTTATTGGTTTAATGCTTTCTCCCGAGCG
CGCCCAAACTCAAAAACTCCAAATACTTTCCATAAAGGGTATATCCACAC
CAACGCACGCACACACATTGTGTGGCAACAACAAAAATGTGGGCAGAGAA
GATGAAGTCATCGCTTTGTTGCCTTGAAAAAAAAAAAACACACACACATA
CAACACGAAAAAAAAAAAAAAAAAAAAAA
LD10495.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 20:09:26 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 20923139..20924871 | 1907..173 | 8575 | 99.9 | Minus |
chrX | 22417052 | chrX | 20926931..20927102 | 172..1 | 860 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21057964..21059714 | 1925..173 | 8635 | 99.8 | Minus |
X | 23542271 | X | 21061774..21061945 | 172..1 | 860 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 21043056..21044806 | 1925..173 | 8655 | 99.7 | Minus |
X | 23527363 | X | 21046866..21047037 | 172..1 | 860 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 13:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 403..429 | 1..27 | 135 | 100 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 9066..9092 | 1..27 | 126 | 96.3 | Plus |
Dbuz\ISBu2 | 726 | Dbuz\ISBu2 ISBU2 726bp | 267..435 | 1550..1718 | 125 | 59.3 | Plus |
412 | 7567 | 412 412 7567bp | 1173..1224 | 1659..1711 | 118 | 71.7 | Plus |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 59..115 | 1196..1139 | 116 | 69 | Minus |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 6099..6166 | 1466..1540 | 116 | 66.7 | Plus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 986..1071 | 111..26 | 114 | 62.1 | Minus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 936..985 | 1710..1655 | 113 | 73.2 | Minus |
LD10495.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:25:24 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 20923172..20924871 | 173..1873 | 99 | <- | Minus |
chrX | 20926931..20927075 | 28..172 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:59 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10987-RA | 1..258 | 371..628 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:56 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10987-RA | 1..258 | 371..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:54 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10987-RA | 1..1905 | 1..1907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:56 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10987-RA | 1..1905 | 1..1907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21057982..21059714 | 173..1907 | 99 | <- | Minus |
X | 21061774..21061945 | 1..172 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21057982..21059714 | 173..1907 | 99 | <- | Minus |
X | 21061774..21061945 | 1..172 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21057982..21059714 | 173..1907 | 99 | <- | Minus |
X | 21061774..21061945 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20929009..20930741 | 173..1907 | 99 | <- | Minus |
arm_X | 20932801..20932972 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20929009..20930741 | 173..1907 | 99 | <- | Minus |
arm_X | 20932801..20932972 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20929009..20930741 | 173..1907 | 99 | <- | Minus |
arm_X | 20932801..20932972 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:48 Download gff for
LD10495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21043074..21044806 | 173..1907 | 99 | <- | Minus |
X | 21046866..21047037 | 1..172 | 100 | | Minus |
LD10495.pep Sequence
Translation from 370 to 627
> LD10495.pep
MVYTVRGPHIVYGIGVGLVSATGKRNISGLDMNNKTKPTSRKDSVKRKGR
NCGYKSDKEGHRNNQFDVAKFVVAHALEEKEKPRR*
Sequence LD10495.pep has no blast hits.
LD10495.hyp Sequence
Translation from 370 to 627
> LD10495.hyp
MVYTVRGPHIVYGIGVGLVSATGKRNISGLDMNNKTKPTSRKDSVKRKGR
NCGYKSDKEGHRNNQFDVAKFVVAHALEEKEKPRR*
Sequence LD10495.hyp has no blast hits.