Clone LD10495 Report

Search the DGRC for LD10495

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:95
Vector:pBS SK-
Associated Gene/TranscriptCG10987-RA
Protein status:LD10495.pep: validated full length
Preliminary Size:2103
Sequenced Size:1929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10987 2001-01-01 Release 2 assignment
CG10987 2001-10-10 Blastp of sequenced clone
CG10987 2003-01-01 Sim4 clustering to Release 3
CG10987 2008-04-29 Release 5.5 accounting
CG10987 2008-08-15 Release 5.9 accounting
CG10987 2008-12-18 5.12 accounting

Clone Sequence Records

LD10495.complete Sequence

1929 bp (1929 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061124

> LD10495.complete
TAAAGTCTTCTTATTTGGGATTTTACACATCAATAAAAATATCCAATCAA
TGTGTAAAATTTAAATGATTCTTTTTCTTGCGGCTCATATGTACATTAGA
TCTTTAAAAAGATGTCAAGAAGATGAATTAATCGAGTGGATTGCCTACTT
CTCGGCTTTGGAAAAATTAAATAGATCCGCACAACCTGTTTCCGACTCGA
CCAGGCCAACAAAACTTGGCCAAAAGCACTCCAGAGAGTATATACACATA
TAGAACAAAGCAAACAACGGGTGCGAGTTTTGTTTGCTGACCCCAAAAAA
GAACGCCAGCCGAACAAAAAAAAAAAAAACACTAAAAACACTGGGAAAGT
GGCCAAAAGTGGGCGAGGGCATGGTCTATACGGTCCGTGGTCCCCATATA
GTTTATGGTATTGGGGTTGGTCTGGTGAGTGCGACTGGAAAACGAAACAT
TTCCGGCCTGGACATGAATAATAAAACAAAGCCAACGAGCAGGAAAGATA
GTGTGAAAAGAAAAGGGAGAAATTGTGGATACAAGAGCGACAAAGAAGGG
CATCGAAATAATCAATTTGATGTCGCAAAGTTCGTGGTCGCCCATGCACT
GGAAGAAAAAGAAAAGCCCAGAAGATAACATTTCCAAACTTTTCGACAAT
GCCAACTAAAATAATGTGAGCATTGACCCGATCTTGATGGCGTCTTGATG
ATGTCTTGACCTGATCACGATGGCGATACGATATTCAAATTCTAATTTAC
CATAACATATCTACGATACAGGATTTTCTCTCAGTGTGATTATTGACAGT
GGTCAACCAACCGATGACAGGCAGTCAGTCTGACGTCCACGATGATGATC
ATAATGCGCTAGTGATGTGGACTGTTACTCAACACTTTGCATATTGACTG
CACTGCCACAATGTCTTTGGCGTGCGCCTAATAACGATAATGATGATAGC
GGCGCAAGTGACACACATCAGTCACAAAAACAAACAAGGCCAACACTTCC
TCGTCATTATCATCAACTCTTCGGGGGTGTGCAGCAGCAACACAAAAAAA
GCAATGTAAATCAGTTGAGTGTTAACGAAATGCAAATACCCTAAAAACGG
AATGAACATTTACCACCCAGAATAGAGAAAAGAGTGCTTGTTCTTGGCCT
CGGTCAAAGAAATTTTTAAAAAACGTTGGCCTATCTATTCTATTCCGAAT
ATCTACAGCGTAGCAAATGAAGAGTTGTCCGGTCTTGAATATCGACGAGC
GCCACCTAGCGGAGGATATACGTATTACTCATATTTCCTGACGTCGTTCT
AAAAATCTTCATTTATTTAAAACTTATTTTTTTAACAAATTCTTTTGTTC
TTTTTGGTGATTAGCTAGCTAGTTGAAGTATAGGTAGATGTTTGGAATAC
ATATATTAGATAGAATTGGTAGAATTTGGCCAGAAAATTAGGAAAAAGCA
TTAATAGGGGGGGCGTTCAAAATTTAAATTTCAATATTGCACTGCACTGT
CACTTGAATCTGTAATCTAAGTCCAAATATTCCAGATCATAAAGTTCACG
TTCATACGGACAATCAATAAATTGCTTATGGATAATACAAGCACAATATA
ATTCAATTTTTTATATTTTATGGACTTTAGGTCCGTGTTGAAATAACAAT
TTTTTAAGATATGTGCATACATATTTATGTATATAAAGTAATGTTTATAA
TATATGGTGATTTTGGTTTGGTTTATTGGTTTAATGCTTTCTCCCGAGCG
CGCCCAAACTCAAAAACTCCAAATACTTTCCATAAAGGGTATATCCACAC
CAACGCACGCACACACATTGTGTGGCAACAACAAAAATGTGGGCAGAGAA
GATGAAGTCATCGCTTTGTTGCCTTGAAAAAAAAAAAACACACACACATA
CAACACGAAAAAAAAAAAAAAAAAAAAAA

LD10495.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 20:09:26 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20923139..20924871 1907..173 8575 99.9 Minus
chrX 22417052 chrX 20926931..20927102 172..1 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21057964..21059714 1925..173 8635 99.8 Minus
X 23542271 X 21061774..21061945 172..1 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21043056..21044806 1925..173 8655 99.7 Minus
X 23527363 X 21046866..21047037 172..1 860 100 Minus
Blast to na_te.dros performed 2019-03-15 13:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 403..429 1..27 135 100 Plus
roo 9092 roo DM_ROO 9092bp 9066..9092 1..27 126 96.3 Plus
Dbuz\ISBu2 726 Dbuz\ISBu2 ISBU2 726bp 267..435 1550..1718 125 59.3 Plus
412 7567 412 412 7567bp 1173..1224 1659..1711 118 71.7 Plus
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 59..115 1196..1139 116 69 Minus
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 6099..6166 1466..1540 116 66.7 Plus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 986..1071 111..26 114 62.1 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 936..985 1710..1655 113 73.2 Minus

LD10495.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:25:24 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20923172..20924871 173..1873 99 <- Minus
chrX 20926931..20927075 28..172 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:43:59 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
CG10987-RA 1..258 371..628 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:56 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
CG10987-RA 1..258 371..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:54 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
CG10987-RA 1..1905 1..1907 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:56 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
CG10987-RA 1..1905 1..1907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
X 21057982..21059714 173..1907 99 <- Minus
X 21061774..21061945 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
X 21057982..21059714 173..1907 99 <- Minus
X 21061774..21061945 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:25:24 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
X 21057982..21059714 173..1907 99 <- Minus
X 21061774..21061945 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20929009..20930741 173..1907 99 <- Minus
arm_X 20932801..20932972 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20929009..20930741 173..1907 99 <- Minus
arm_X 20932801..20932972 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:04 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20929009..20930741 173..1907 99 <- Minus
arm_X 20932801..20932972 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:48 Download gff for LD10495.complete
Subject Subject Range Query Range Percent Splice Strand
X 21043074..21044806 173..1907 99 <- Minus
X 21046866..21047037 1..172 100   Minus

LD10495.pep Sequence

Translation from 370 to 627

> LD10495.pep
MVYTVRGPHIVYGIGVGLVSATGKRNISGLDMNNKTKPTSRKDSVKRKGR
NCGYKSDKEGHRNNQFDVAKFVVAHALEEKEKPRR*
Sequence LD10495.pep has no blast hits.

LD10495.hyp Sequence

Translation from 370 to 627

> LD10495.hyp
MVYTVRGPHIVYGIGVGLVSATGKRNISGLDMNNKTKPTSRKDSVKRKGR
NCGYKSDKEGHRNNQFDVAKFVVAHALEEKEKPRR*
Sequence LD10495.hyp has no blast hits.