Clone LD10519 Report

Search the DGRC for LD10519

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:105
Well:19
Vector:pBS SK-
Associated Gene/TranscriptplexA-RE
Protein status:LD10519.pep: wuzgold
Preliminary Size:2740
Sequenced Size:2743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11081 2003-04-01 Blastp of sequenced clone
plexA 2008-04-29 Release 5.5 accounting
plexA 2008-08-15 Release 5.9 accounting
plexA 2008-12-18 5.12 accounting

Clone Sequence Records

LD10519.complete Sequence

2743 bp (2743 high quality bases) assembled on 2003-04-01

GenBank Submission: BT006027

> LD10519.complete
CGAAAATAGACAGAAATTATGTTCAGTGACTTGCGATGTAAAGAAATAAT
AGTTAATGAGTGAAATATAGGAAAACAAACAGTTTACATGATGGTCATAC
AAGTTATTGCTCCAAGTTAAATTATCTTGAATGGAACGGATAATAAAAAT
TGCAAGAATGACACCAACGCAAAGGAAATTTTAATATTTACGTAAAATTT
CAAATAAATAAGGGACATACAAGCGCCTACAAGTAACAATTTCATAAATA
AGGTAGCTTTGATAGTCCTGTTTAAGGAGCGATTGTGGAGATGAATTTTG
TTCTTAGTGTGTTGTTAATAGCAATTCTTAAAGATAAGTATGATTACTGG
CTGCCATCGAGGACAGGTTGTCAAACCCTGGCAGCAAATATATGGTCTGA
CAAGACGACTGCGCAAAATGAGCCGATAAATTTGACTAATGCAAATGCAC
CGATAAAGAATGCAAAGAATCTGAATTCTACGATTACAAATGTAGCTGCG
TTTGACACCAAATTGAATCACCTATTAGTGGACACCATTACTGGACGAGT
CTTCGTTGGTGGTGTTAACAGGTTGTATCAGTTGTCGCCTGATTTGGAGC
TTTCCGAAACTGTGAAAACGGGGCCTCAAAATGATTCCGTCGAGTGTAGC
ATTCTTGATTGTCCATTAAATGCAGTTCGCAGTCCGACGGACAATTATAA
TAAGGTCTTGCTCATTGATCGTGCAACTTCAAGACTTATTGCGTGTGGAT
CACTATTTCAAGGTACATGCACAGTTCGTAATCTTCAAAATGTCAGCATA
ATTGAGCATGAAGTTCCTGATGCTGTTGTGGCTAATGATGCCAACTCCTC
AACCGTAGCTTTTATTGCGCCGGGACCTCCACAACATCCGGTGACTAATG
TGATGTACGTCGGAGTTACATACACAAATAATTCACCGTACCGCAGTGAA
ATTCCCGCAGTTGCATCCCGCTCCCTCGAAAAGACTAAAATGTTTCAGAT
TGCTTCCTCGGCAGTTACAACTGGAACGAGAACTTTTATAAACTCATACG
CACGTGAAACATATTTTGTCAACTATGTTTATGGATTCAGTTCTGAGCGA
TTTTCTTACTTTCTAACAACACAGTTAAAGCACAGTCACCATTCTTCTCC
TAAAGAGTACATAACGAAACTCGTACGAATATGTCAGGAAGACTCGAACT
ATTATTCTTACACTGAAATTCCAGTGGAATGTATAAGTGATGCTCAAGGC
GGCACTAAATTCAACTTGGTTCAGGCTGGATTCTTGGGAAAACCTAGCTC
AGACCTGGCTCAAAGCTTAGGTATATCTATTCAAGATGATGTCCTCTTTG
CTGTTTTTTCAAAAGGAGAAGGGAATACACCAACGAACAATTCTGCACTC
TGCATTTACTCATTAAAATCTATTCGTCGAAAGTTTATGCAAAACATAAA
ATCCTGTTTTAACGGAAGTGGCATGAGGGGCCTGGACTTTATATCACCCA
GCATGCCATGTGTTCTAACGAGTGGAGAACAGGCGCTACTGGGCGAGTAA
TTCTGTACGATGAGGACGTAACATCAAAAACGGAGAGCGAATGGAAAAAG
CTCAACACTTTGCAGCACTATAATGTTCCGGATGGAGCCGGGCTAAGCTT
AGTACCAAAGCAAAGTTCCATTTATAACTTCAGTATTTTATCGGACAAAA
ATGAAAAATCGCACAAGTATGAAACTCTTAATATATCGAAATACACCTCC
TCCTCTCCGACATTTAGCCGCGCAGGAAGTCCTCTTAACAATGATATGCA
TGAAAATGGTCTGAGATACTGGCATCTAGTAAAACATCATGATAGTGATA
TGCAAAAAGAAGGGGAACGGGTTAACAAATTAGTGTCAGAGATTTACTTA
ACCAGGCTATTGGCTACTAAAGGAACGCTTCAGAAATTTGTAGATGATCT
CTTTGAAACGATATTTAGCACCGCTCACCGTGGATCGGCACTTCCATTAG
CTATAAAGTACATGTTTGATTTTCTTGACGATCAAGCTCAATTGCACGGT
ATTACTGATCCAGAAGTTGTGCATACTTGGAAAAGTAACAGCTTACCATT
GAGGTTTTGGGTGAACTTAATTAAAAATCCAAATTTTGTCTTTGACATCC
ATAAATCGAACATAGTGGATTCCTGCCTGTCAGTAGTAGCTCAAACTTTT
ATGGATTCTTGTTCGACTTCTGATCATCGATTGGGCAAAGACTCACCAAG
CTCGAAACTTCTGTATGCAAAAGATATACCAGAGTATCGAAAATGGGTAG
ATCGCTATTATAGAGACATTCGGGATATGTCCCCCATTTCAGATCAGGAC
ATGAACGCCATGCTTGCGGAAGAGTCAAGGCTGCACACAACAGAATTTAA
TACGAATTGTGCTTTACATGAGCTATACACATACGCTGTGAAGTACAATG
AACAACTAACTGTTACACTTGAAGAGGATGAATTTTCGCAAAAGCAGCGA
TTGGCTTTTAAATTAGAGCAAGTTCACAACATAATGTCGTCAGAATAAGA
GCTGCGCCATCCTACCAAGATGACAACAAAATACTAAAAGTTCAACATTA
TGAAAATCATTTGTATATGTCGTATTTGCTCATTAATTACTTAATAGTAT
GTTATTGTATGTATGTATGTATTTAATTTAAGTAAACTCATGTAAGATCT
AATATGCAAGACAAGTAATCTAACTAAAAAAAAAAAAAAAAAA

LD10519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
plexA-RE 2979 plexA-RE 94..2825 1..2732 13645 99.9 Plus
plexA-RA 6887 plexA-RA 94..1614 1..1521 7590 99.9 Plus
plexA.c 7390 plexA.c 61..1581 1..1521 7590 99.9 Plus
plexA-RA 6887 plexA-RA 5193..6405 1520..2732 6065 100 Plus
plexA.c 7390 plexA.c 5160..6372 1520..2732 6065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 1042773..1044211 1520..82 7150 99.8 Minus
chr4 1351717 chr4 1035507..1035896 2106..1717 1950 100 Minus
chr4 1351717 chr4 1034860..1035071 2591..2380 1060 100 Minus
chr4 1351717 chr4 1035966..1036165 1719..1520 1000 100 Minus
chr4 1351717 chr4 1035127..1035273 2380..2234 735 100 Minus
chr4 1351717 chr4 1034172..1034307 2725..2590 680 100 Minus
chr4 1351717 chr4 1035321..1035454 2235..2102 670 100 Minus
chr4 1351717 chr4 1047476..1047558 83..1 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1022242..1023680 1520..82 7180 99.9 Minus
4 1348131 4 1014963..1015352 2106..1717 1950 100 Minus
4 1348131 4 1014316..1014527 2591..2380 1060 100 Minus
4 1348131 4 1015422..1015621 1719..1520 1000 100 Minus
4 1348131 4 1014583..1014729 2380..2234 735 100 Minus
4 1348131 4 1013626..1013768 2732..2590 715 100 Minus
4 1348131 4 1014777..1014910 2235..2102 670 100 Minus
4 1348131 4 1026961..1027043 83..1 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 1022242..1023680 1520..82 7180 99.9 Minus
4 1331231 4 1014963..1015352 2106..1717 1950 100 Minus
4 1331231 4 1014316..1014527 2591..2380 1060 100 Minus
4 1331231 4 1015422..1015621 1719..1520 1000 100 Minus
4 1331231 4 1014583..1014729 2380..2234 735 100 Minus
4 1331231 4 1013626..1013768 2732..2590 715 100 Minus
4 1331231 4 1014777..1014910 2235..2102 670 100 Minus
4 1331231 4 1026961..1027043 83..1 415 100 Minus
Blast to na_te.dros performed 2019-03-16 01:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 3322..3411 2200..2117 129 65.6 Minus
invader3 5484 invader3 INVADER3 5484bp 5073..5152 2642..2722 123 64.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1653..1724 2677..2611 122 69.4 Minus

LD10519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:53:23 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 1034172..1034307 2590..2725 100 <- Minus
chr4 1034862..1035070 2381..2589 100 <- Minus
chr4 1035127..1035272 2235..2380 100 <- Minus
chr4 1035322..1035452 2104..2234 100 <- Minus
chr4 1035510..1035896 1717..2103 100 <- Minus
chr4 1035969..1036164 1521..1716 100 <- Minus
chr4 1042773..1044211 82..1520 99 <- Minus
chr4 1047478..1047558 1..81 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:21:15 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..1260 291..1550 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:30 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..1260 291..1550 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:43 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RA 1..1233 291..1522 99 -- Plus
plexA-RA 4813..5838 1523..2548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:57 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..1260 291..1550 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:49:14 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
PlexA-RA 1..1233 291..1522 99 -- Plus
PlexA-RA 4813..5838 1523..2548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:21:15 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..2725 1..2725 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:30 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..2725 1..2725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:43 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RA 59..1581 1..1522 99 -- Plus
plexA-RA 5161..6363 1523..2725 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:57 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
plexA-RE 1..2725 1..2725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:49:14 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
PlexA-RA 59..1581 1..1522 99 -- Plus
PlexA-RA 5161..6363 1523..2725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:23 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
4 1013633..1013768 2590..2725 100 <- Minus
4 1014318..1014526 2381..2589 100 <- Minus
4 1014583..1014728 2235..2380 100 <- Minus
4 1014778..1014908 2104..2234 100 <- Minus
4 1014966..1015352 1717..2103 100 <- Minus
4 1015425..1015620 1521..1716 100 <- Minus
4 1022242..1023680 82..1520 99 <- Minus
4 1026963..1027043 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:23 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
4 1013633..1013768 2590..2725 100 <- Minus
4 1014318..1014526 2381..2589 100 <- Minus
4 1014583..1014728 2235..2380 100 <- Minus
4 1014778..1014908 2104..2234 100 <- Minus
4 1014966..1015352 1717..2103 100 <- Minus
4 1015425..1015620 1521..1716 100 <- Minus
4 1022242..1023680 82..1520 99 <- Minus
4 1026963..1027043 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:23 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
4 1013633..1013768 2590..2725 100 <- Minus
4 1014318..1014526 2381..2589 100 <- Minus
4 1014583..1014728 2235..2380 100 <- Minus
4 1014778..1014908 2104..2234 100 <- Minus
4 1014966..1015352 1717..2103 100 <- Minus
4 1015425..1015620 1521..1716 100 <- Minus
4 1022242..1023680 82..1520 99 <- Minus
4 1026963..1027043 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:43 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1034259..1034394 2590..2725 100 <- Minus
arm_4 1034944..1035152 2381..2589 100 <- Minus
arm_4 1035209..1035354 2235..2380 100 <- Minus
arm_4 1035404..1035534 2104..2234 100 <- Minus
arm_4 1035592..1035978 1717..2103 100 <- Minus
arm_4 1036051..1036246 1521..1716 100 <- Minus
arm_4 1042868..1044306 82..1520 99 <- Minus
arm_4 1047589..1047669 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:01 Download gff for LD10519.complete
Subject Subject Range Query Range Percent Splice Strand
4 1014318..1014526 2381..2589 100 <- Minus
4 1014583..1014728 2235..2380 100 <- Minus
4 1014778..1014908 2104..2234 100 <- Minus
4 1014966..1015352 1717..2103 100 <- Minus
4 1015425..1015620 1521..1716 100 <- Minus
4 1022242..1023680 82..1520 99 <- Minus
4 1026963..1027043 1..81 100   Minus
4 1013633..1013768 2590..2725 100 <- Minus

LD10519.pep Sequence

Translation from 290 to 1549

> LD10519.pep
MNFVLSVLLIAILKDKYDYWLPSRTGCQTLAANIWSDKTTAQNEPINLTN
ANAPIKNAKNLNSTITNVAAFDTKLNHLLVDTITGRVFVGGVNRLYQLSP
DLELSETVKTGPQNDSVECSILDCPLNAVRSPTDNYNKVLLIDRATSRLI
ACGSLFQGTCTVRNLQNVSIIEHEVPDAVVANDANSSTVAFIAPGPPQHP
VTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIASSAVTTGTRTFI
NSYARETYFVNYVYGFSSERFSYFLTTQLKHSHHSSPKEYITKLVRICQE
DSNYYSYTEIPVECISDAQGGTKFNLVQAGFLGKPSSDLAQSLGISIQDD
VLFAVFSKGEGNTPTNNSALCIYSLKSIRRKFMQNIKSCFNGSGMRGLDF
ISPSMPCVLTSGEQALLGE*

LD10519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19331-PA 2057 GF19331-PA 93..419 77..405 537 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16425-PA 1945 GG16425-PA 1..410 1..410 2108 96.3 Plus
Dere\GG16467-PA 2052 GG16467-PA 69..415 59..405 543 36.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23973-PA 1913 GH23973-PA 29..377 62..410 1766 94.3 Plus
Dgri\GH23993-PA 2067 GH23993-PA 111..435 77..402 546 37.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
PlexA-PF 1928 CG11081-PF 1..410 1..410 2122 100 Plus
PlexA-PA 1945 CG11081-PA 1..410 1..410 2122 100 Plus
PlexB-PB 2051 CG17245-PB 14..412 4..402 539 33.4 Plus
PlexB-PA 2051 CG17245-PA 14..412 4..402 539 33.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14102-PA 1895 GI14102-PA 11..359 62..410 1762 94.3 Plus
Dmoj\GI14120-PA 2056 GI14120-PA 97..424 77..405 528 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17574-PA 1909 GL17574-PA 6..374 42..410 1850 93.8 Plus
Dper\GL18389-PA 2069 GL18389-PA 100..423 77..402 539 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10747-PA 1628 GA10747-PA 1..411 1..410 1907 87.9 Plus
Dpse\GA14409-PA 2069 GA14409-PA 100..423 77..402 540 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13016-PA 1364 GM13016-PA 1..409 1..410 2118 97.8 Plus
Dsec\GM23238-PA 2004 GM23238-PA 89..412 77..402 538 37 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\plexA-PA 900 GD24364-PA 1..409 1..410 2151 98 Plus
Dsim\GD24393-PA 950 GD24393-PA 5..321 87..405 525 36.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20569-PA 1955 GJ20569-PA 54..419 46..410 1808 92.9 Plus
Dvir\GJ14688-PA 2069 GJ14688-PA 115..439 77..402 525 36 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13684-PA 1950 GK13684-PA 61..414 59..410 1732 93.5 Plus
Dwil\GK13667-PA 2061 GK13667-PA 66..420 49..402 532 34.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14494-PA 1945 GE14494-PA 1..410 1..410 2135 97.1 Plus
Dyak\GE14532-PA 2052 GE14532-PA 69..415 59..405 531 34.9 Plus

LD10519.hyp Sequence

Translation from 290 to 1549

> LD10519.hyp
MNFVLSVLLIAILKDKYDYWLPSRTGCQTLAANIWSDKTTAQNEPINLTN
ANAPIKNAKNLNSTITNVAAFDTKLNHLLVDTITGRVFVGGVNRLYQLSP
DLELSETVKTGPQNDSVECSILDCPLNAVRSPTDNYNKVLLIDRATSRLI
ACGSLFQGTCTVRNLQNVSIIEHEVPDAVVANDANSSTVAFIAPGPPQHP
VTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIASSAVTTGTRTFI
NSYARETYFVNYVYGFSSERFSYFLTTQLKHSHHSSPKEYITKLVRICQE
DSNYYSYTEIPVECISDAQGGTKFNLVQAGFLGKPSSDLAQSLGISIQDD
VLFAVFSKGEGNTPTNNSALCIYSLKSIRRKFMQNIKSCFNGSGMRGLDF
ISPSMPCVLTSGEQALLGE*

LD10519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
PlexA-PF 1928 CG11081-PF 1..410 1..410 2122 100 Plus
PlexA-PA 1945 CG11081-PA 1..410 1..410 2122 100 Plus
PlexB-PB 2051 CG17245-PB 14..412 4..402 539 33.4 Plus
PlexB-PA 2051 CG17245-PA 14..412 4..402 539 33.4 Plus