Clone LD10670 Report

Search the DGRC for LD10670

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:106
Well:70
Vector:pBS SK-
Associated Gene/TranscriptCG17556-RA
Protein status:LD10670.pep: gold
Sequenced Size:1196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17556 2009-08-18 Manual selection by Sue Celniker

Clone Sequence Records

LD10670.complete Sequence

1196 bp assembled on 2009-10-23

GenBank Submission: BT100172.1

> LD10670.complete
AAATCGCTAGTTAATGATTACAATTGGGAAATTAAATTAAATTGATGAGA
TATTTAAGTCCGCCTAAGTGAATATGTCGCTAGATTATGAGAAGATGAGC
TGGTCGGATGTACGGGATCAGTTCAGAACGTGGCGCGAGGAGACGGGTCG
CCACAGCGAGGAGGTGGTCCAGCTGTGGGTTGCTGTGCTAGAGGACAAGG
TGCACAAGACCGGCAACGAGCGGCATCTCATCCTGGAGCAGGTGATCATC
GCGGCATTGGATACGGCTCGCTTTGACATCGCCACCAAGTGTACCAAGCA
GCTGTCCCTCGAGTTCCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGA
TGCGCTACGAGGCCCTGGAGCAGTACGATGAGGCCGACGAGGTCCTGGAT
GCAATCATTGCTAAGGACGAGACAAATGCCGCGCCCAGGAAGCGCAAGAT
TGCCATCCTTAAGGCCCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCA
ACGAGTATCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTG
TGCAACATGTATCTGGCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCAT
GGAGGAGGTTTTGCTGCACAATCCGCATAGCCATCTAATACACCAGCGTT
TGGCAGAAATACGATACACAATGGGTGGCGTCGAGAATATGGAATCGGCT
CGCACTTACTATTCGCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGC
CCTTTATGGCATTTACTTGTGCTGCAACCATTTGGACAACTCTCGAGCCG
TGAGCTCCAAACGGAAGGAGCTGCAAAAGTTGAGTCAGTGGGCCCTCGAA
CAACTTTTGACTAAACAAACGATTGTACCCTTGGAGGCTGCTTTTGGAAA
CCTGGAAATCAAATCGAATTGACCAACATAAGCACTACAAATTTGTGCAA
TAGATGCCAGAATGTAATGGTTCCAAATATTTTCAGATGTGGGTTTCCAG
TTTCTGTTCTTTAAGCAAGTTACATAGATAAACAATTAAAGAAATAGGAG
TAAAAACAATTTTATAGTCAGTGCATCCAAGCAACTGTTTTTGGTGGTCT
AGTATTGTTGACGGCATTGAAAAACATTTATTATTGAGGTAGGCAAAAAT
AGTCCTGTAATAAATTTAGATTAAACGCAAAAAAAAAAAAAAAAAA

LD10670.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-RA 1341 CG17556-RA 90..1211 1..1122 5445 99 Plus
CG3678-RA 1077 CG3678-RA 28..1077 1..1050 5085 98.9 Plus
CG17556-RA 1341 CG17556-RA 1223..1282 1121..1180 300 100 Plus
CG31274-RB 1496 CG31274-RB 1389..1448 1180..1121 300 100 Minus
CG31274-RB 1496 CG31274-RB 1460..1496 1122..1086 185 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12814820..12815325 1178..673 2515 99.8 Minus
chr3R 27901430 chr3R 12819028..12819546 1178..673 2200 95.4 Minus
chr3R 27901430 chr3R 12819889..12820300 518..107 2045 99.8 Minus
chr3R 27901430 chr3R 12815668..12816079 518..107 2000 99 Minus
chr3R 27901430 chr3R 12815386..12815543 674..517 790 100 Minus
chr3R 27901430 chr3R 12819607..12819764 674..517 790 100 Minus
chr3R 27901430 chr3R 12820412..12820518 107..1 535 100 Minus
chr3R 27901430 chr3R 12816220..12816326 107..1 430 93.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16990332..16990839 1180..673 2540 100 Minus
3R 32079331 3R 16994540..16995060 1180..673 2210 95.4 Minus
3R 32079331 3R 16995403..16995814 518..107 2060 100 Minus
3R 32079331 3R 16991182..16991593 518..107 2000 99 Minus
3R 32079331 3R 16990900..16991057 674..517 790 100 Minus
3R 32079331 3R 16995121..16995278 674..517 790 100 Minus
3R 32079331 3R 16995926..16996032 107..1 535 100 Minus
3R 32079331 3R 16991734..16991840 107..1 430 93.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16731163..16731670 1180..673 2540 100 Minus
3R 31820162 3R 16735442..16735891 1122..673 2085 97.5 Minus
3R 31820162 3R 16736234..16736645 518..107 2060 100 Minus
3R 31820162 3R 16732013..16732424 518..107 2000 99 Minus
3R 31820162 3R 16735952..16736109 674..517 790 100 Minus
3R 31820162 3R 16731731..16731888 674..517 790 100 Minus
3R 31820162 3R 16736757..16736863 107..1 535 100 Minus
3R 31820162 3R 16732565..16732671 107..1 430 93.4 Minus
3R 31820162 3R 16735371..16735430 1180..1121 300 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:39:21 has no hits.

LD10670.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:40:12 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12814820..12815324 674..1178 99 <- Minus
chr3R 12815387..12815543 517..673 100 <- Minus
chr3R 12819891..12820299 108..516 99 <- Minus
chr3R 12820412..12820518 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-23 18:46:22 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RA 1..849 74..922 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:47:02 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RA 1..849 74..922 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:03 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RA 1..849 74..922 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:18 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RA 1..849 74..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-23 18:46:22 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 57..1178 1..1122 99 <- Plus
CG17556-RA 1192..1247 1123..1178 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:47:02 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 57..1178 1..1122 99 <- Plus
CG17556-RA 1192..1247 1123..1178 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:03 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RB 39..1216 1..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:18 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
CG3678-RB 39..1216 1..1178 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:12 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16990334..16990838 674..1178 100 <- Minus
3R 16990901..16991057 517..673 100 <- Minus
3R 16995405..16995813 108..516 100 <- Minus
3R 16995926..16996032 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:12 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16990334..16990838 674..1178 100 <- Minus
3R 16990901..16991057 517..673 100 <- Minus
3R 16995405..16995813 108..516 100 <- Minus
3R 16995926..16996032 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:40:12 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16990334..16990838 674..1178 100 <- Minus
3R 16990901..16991057 517..673 100 <- Minus
3R 16995405..16995813 108..516 100 <- Minus
3R 16995926..16996032 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:03 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12816056..12816560 674..1178 100 <- Minus
arm_3R 12816623..12816779 517..673 100 <- Minus
arm_3R 12821127..12821535 108..516 100 <- Minus
arm_3R 12821648..12821754 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:26:51 Download gff for LD10670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16731165..16731669 674..1178 100 <- Minus
3R 16731732..16731888 517..673 100 <- Minus
3R 16736236..16736644 108..516 100 <- Minus
3R 16736757..16736863 1..107 100   Minus

LD10670.pep Sequence

Translation from 73 to 921

> LD10670.pep
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLSLEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSN*

LD10670.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17917-PA 293 GF17917-PA 1..293 1..282 1350 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16802-PA 282 GG16802-PA 1..282 1..282 1480 97.5 Plus
Dere\GG16801-PA 282 GG16801-PA 1..282 1..282 1480 97.5 Plus
Dere\GG11068-PA 159 GG11068-PA 1..159 1..159 826 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18069-PA 293 GH18069-PA 1..293 1..282 1261 80.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-PB 282 CG17556-PB 1..282 1..282 1459 100 Plus
CG17556-PA 282 CG17556-PA 1..282 1..282 1459 100 Plus
CG3678-PB 282 CG3678-PB 1..282 1..282 1456 99.6 Plus
CG3678-PA 282 CG3678-PA 1..282 1..282 1456 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23748-PA 293 GI23748-PA 1..293 1..282 1294 82.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22995-PA 293 GL22995-PA 1..293 1..282 1348 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14552-PA 293 GA14552-PA 1..293 1..282 1348 86.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15395-PA 282 GM15395-PA 1..282 1..282 1485 97.9 Plus
Dsec\GM24122-PA 278 GM24122-PA 8..278 12..282 1426 98.2 Plus
Dsec\GM22065-PA 120 GM22065-PA 2..120 30..148 603 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20261-PA 282 GD20261-PA 1..282 1..282 1496 98.6 Plus
Dsim\GD20260-PA 282 GD20260-PA 1..282 1..282 1495 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10594-PA 293 GJ10594-PA 1..293 1..282 1282 81.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12757-PA 293 GK12757-PA 1..293 1..282 1275 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26117-PA 282 GE26117-PA 1..282 1..282 1471 96.8 Plus
Dyak\GE26119-PA 282 GE26119-PA 1..282 1..282 1471 96.8 Plus

LD10670.hyp Sequence

Translation from 73 to 921

> LD10670.hyp
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLSLEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSN*

LD10670.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-PB 282 CG17556-PB 1..282 1..282 1459 100 Plus
CG17556-PA 282 CG17556-PA 1..282 1..282 1459 100 Plus
CG3678-PB 282 CG3678-PB 1..282 1..282 1456 99.6 Plus
CG3678-PA 282 CG3678-PA 1..282 1..282 1456 99.6 Plus