Clone LD10773 Report

Search the DGRC for LD10773

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:107
Well:73
Vector:pBS SK-
Associated Gene/TranscriptNs4-RA
Protein status:LD10773.pep: gold
Preliminary Size:1939
Sequenced Size:1963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9320 2001-01-01 Release 2 assignment
CG9320 2002-05-31 Blastp of sequenced clone
CG9320 2003-01-01 Sim4 clustering to Release 3
CG9320 2008-04-29 Release 5.5 accounting
CG9320 2008-08-15 Release 5.9 accounting
CG9320 2008-12-18 5.12 accounting

Clone Sequence Records

LD10773.complete Sequence

1963 bp (1963 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118506

> LD10773.complete
AACAACATTCAATCCCAATTAACTACAACTAACAGTTGGCCACCGCTGCT
GGACGAAACCAAATTGACCGGGAGTGAGACCAGGACGTGACCCAAAAACG
ATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCGGCAAGAAGAAGAAGGA
CCAGATGTTGCAAAAGCGCAACACAAAAGGTCCCCCAAAGTATCTGAGGA
GCACGCAGGAGTCGTATGAGGACAGCGATGTGCCGGAAACGACCAGGAAA
CTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACCGAAACAAGAACGTCAA
TCGCTATAATTTGCAATTCTACCAGGAGGGCAAAAAGGAACTGGAGCAAA
TGAAACAAGAGGGCTTTAAACCGTTCGAGAAACTCAGTCCCGCTCAGCGG
GAAGTGGACGACCGATACTTTGCCGGCTGCGACTTCCCAGTTCGTCCACC
TTGGACGCTAACGGAGTCCAAGGAAGAGCTTGATCGCACCGAGAATCGCT
ACTTTAAGGAATACGTGGACGAGCTGCAGAAAAAGCAGCGTGCTGGAGAT
TCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGGAAACCTGGCGTCAGCT
ATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTGATCATTGTGGACGTGC
GCTATGCCACGCTGATGTTTCCACCCTCCCTGTACGACTATATTATCAAC
ACGCTAAAGAAACATGCGATAGTGGTGTTCAACAAGGTGGATCTAGTCGA
ACCGCATGCGGTGGTGGCTTGGAGGCAATACTTCCGCGACCGTTACCCCC
AGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCCCCGATCCCGCAAAGGA
AGTCAACGTGGTCCACAGGCTCATCGCAGGAGTATGGAAGGAGTGTATAA
TATCTACAAGGAATGCCAGCGCTATGTCCAAGGAGAGGTGGATCTAACAA
CCTGGGAGCAGAAGATACGAGAGGACATGCGTAGTGATCAGCTTGACATC
CTGGATGAAATATCAACGGCCGTGGAGGGTGAACTCAAGATCAGCAGCAG
CATCGACACCACGCCCCACGAGCACGTTAAATATCACAGTGGGGTCCTGA
CCATTGGCTGCATTGGATTTCCCAATGTCGGAAAGTCGTCGCTGATCAAT
GCCTTAAAGGGACGCAAGGTGGTCAGCGTTAGTCGCACGCCCGGACATAC
GAAGCACTTTCAGACAATTTTCCTCACCCCACTTGTTCGCCTCTGTGATT
GTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAAAAGCCTGCAAGTGCTG
CTGGGCAGTTTCCCCATATCGCAACTGGCTGTTCCATACCGCTCCCTGAA
GTTTCTCGGCGAACATCTGAATCTACCACAGCTTCTGCGTCTCCACCTGC
CCGAGGATTACGATGAGTGGTCTGCGGTGGCCATCTCCGATGCTTGGGCA
TATAAGAGGGGATTCCTCACCGCCAAGGCAGCCAGGCCGGATCGCTACCG
GGCCGCGAATCATATCCTTCGCATGTGCCTGGCCGGCCAACAGATGTTGG
TATTGCAGTTTTATCCGCCCGGATTTGAGGAGCGACGTGAGCACTGGCTC
CAACATCCCGATGTGGGGGAGGTCAAGAAGTACCAGCAAGTCGAATTAGA
TGAGCCGGAGAGCGAGACCAACGGCGACACATCATCCGTCTGCTCGGATA
CTGCCGACAGCGAGGATGAAGACGAGGACAGCTCCAATGACGAGACCAAT
GCTGATGAGGAGGAATGTGGCATCAGGGAAGACGCACCCAGGTCTCGGAA
CGTGTTTGCTCTGCTGGAGGACGATTAAAAGTTGCATTTACTGATTTTGT
TATTGCATCACTAGTTTACACCTATAATTTATTATTACGCTATACAATGT
TTTGCTAACAATAAACTACAACACCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD10773.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
ns4-RA 2074 ns4-RA 123..2049 1..1927 9635 100 Plus
CG9323-RA 3131 CG9323-RA 3053..3131 1927..1849 395 100 Minus
CG9323.a 3135 CG9323.a 3057..3135 1927..1849 395 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20751687..20752880 507..1700 5940 99.8 Plus
chr2L 23010047 chr2L 20751294..20751625 178..509 1660 100 Plus
chr2L 23010047 chr2L 20752946..20753170 1701..1925 1110 99.6 Plus
chr2L 23010047 chr2L 20751027..20751207 1..181 905 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20754365 507..1700 5970 100 Plus
2L 23513712 2L 20752779..20753110 178..509 1660 100 Plus
2L 23513712 2L 20754431..20754657 1701..1927 1135 100 Plus
2L 23513712 2L 20752512..20752692 1..181 905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20754365 507..1700 5970 100 Plus
2L 23513712 2L 20752779..20753110 178..509 1660 100 Plus
2L 23513712 2L 20754431..20754657 1701..1927 1135 100 Plus
2L 23513712 2L 20752512..20752692 1..181 905 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:02:13 has no hits.

LD10773.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:03:19 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20751027..20751205 1..179 100 -> Plus
chr2L 20751296..20751624 180..508 100 -> Plus
chr2L 20751689..20752880 509..1700 99 -> Plus
chr2L 20752946..20753170 1701..1925 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:23 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 1..1728 101..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:27 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
ns4-RA 1..1728 101..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:26:12 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 1..1728 101..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:03 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 1..1728 101..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:22 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 1..1728 101..1828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:39 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 113..2037 1..1925 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:27 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
ns4-RA 113..2037 1..1925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:12 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 37..1961 1..1925 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:03 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 113..2037 1..1925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:22 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 37..1961 1..1925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:19 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20754431..20754655 1701..1925 100   Plus
2L 20753174..20754365 509..1700 100 -> Plus
2L 20752512..20752690 1..179 100 -> Plus
2L 20752781..20753109 180..508 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:19 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20754431..20754655 1701..1925 100   Plus
2L 20753174..20754365 509..1700 100 -> Plus
2L 20752512..20752690 1..179 100 -> Plus
2L 20752781..20753109 180..508 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:19 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20754431..20754655 1701..1925 100   Plus
2L 20753174..20754365 509..1700 100 -> Plus
2L 20752512..20752690 1..179 100 -> Plus
2L 20752781..20753109 180..508 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:12 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20752512..20752690 1..179 100 -> Plus
arm_2L 20752781..20753109 180..508 100 -> Plus
arm_2L 20753174..20754365 509..1700 100 -> Plus
arm_2L 20754431..20754655 1701..1925 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:28 Download gff for LD10773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20752781..20753109 180..508 100 -> Plus
2L 20753174..20754365 509..1700 100 -> Plus
2L 20754431..20754655 1701..1925 100   Plus
2L 20752512..20752690 1..179 100 -> Plus

LD10773.hyp Sequence

Translation from 100 to 1827

> LD10773.hyp
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDD*

LD10773.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-PA 575 CG9320-PA 1..575 1..575 3034 100 Plus
Ns3-PB 606 CG14788-PB 115..510 113..498 392 32.4 Plus
Ns3-PA 606 CG14788-PA 115..510 113..498 392 32.4 Plus
Ns1-PA 581 CG3983-PA 121..424 140..494 177 24.2 Plus
Ns2-PA 674 CG6501-PA 316..509 333..540 174 28.1 Plus

LD10773.pep Sequence

Translation from 100 to 1827

> LD10773.pep
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDD*

LD10773.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15352-PA 575 GF15352-PA 1..575 1..575 2771 90.8 Plus
Dana\GF21278-PA 605 GF21278-PA 114..509 112..498 403 32.9 Plus
Dana\GF17911-PA 581 GF17911-PA 120..347 140..413 201 25.1 Plus
Dana\GF13248-PA 676 GF13248-PA 316..470 333..492 196 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21249-PA 575 GG21249-PA 1..575 1..575 3023 97.6 Plus
Dere\GG12698-PA 607 GG12698-PA 106..511 104..498 381 31.5 Plus
Dere\GG16794-PA 581 GG16794-PA 121..424 140..494 196 23.9 Plus
Dere\GG21043-PA 674 GG21043-PA 316..470 333..492 187 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10880-PA 570 GH10880-PA 1..570 1..575 2143 76.6 Plus
Dgri\GH11875-PA 611 GH11875-PA 113..516 112..498 376 31.8 Plus
Dgri\GH18066-PA 581 GH18066-PA 118..457 137..517 211 23.7 Plus
Dgri\GH20960-PA 682 GH20960-PA 316..476 333..498 198 33.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-PA 575 CG9320-PA 1..575 1..575 3034 100 Plus
Ns3-PB 606 CG14788-PB 115..510 113..498 392 32.4 Plus
Ns3-PA 606 CG14788-PA 115..510 113..498 392 32.4 Plus
Ns1-PA 581 CG3983-PA 121..424 140..494 177 24.2 Plus
Ns2-PA 674 CG6501-PA 316..509 333..540 174 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18253-PA 574 GI18253-PA 1..574 1..575 2238 73.1 Plus
Dmoj\GI15663-PA 613 GI15663-PA 113..518 112..498 384 31.1 Plus
Dmoj\GI21297-PA 678 GI21297-PA 316..470 333..492 197 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18517-PA 577 GL18517-PA 1..577 1..575 2758 90.1 Plus
Dper\GL14378-PA 602 GL14378-PA 115..506 113..498 395 31.7 Plus
Dper\GL21923-PA 583 GL21923-PA 120..348 139..413 199 26.9 Plus
Dper\GL10621-PA 676 GL10621-PA 316..470 333..492 191 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21698-PA 577 GA21698-PA 1..577 1..575 2758 90.1 Plus
Dpse\GA13246-PA 602 GA13246-PA 115..506 113..498 396 31.7 Plus
Dpse\GA26447-PA 583 GA26447-PA 120..348 139..413 199 26.8 Plus
Dpse\GA19643-PA 676 GA19643-PA 316..470 333..492 191 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23366-PA 575 GM23366-PA 1..575 1..575 3046 97.9 Plus
Dsec\GM18974-PA 607 GM18974-PA 114..511 112..498 397 32 Plus
Dsec\GM15388-PA 581 GM15388-PA 121..424 140..494 197 23.9 Plus
Dsec\GM19971-PA 674 GM19971-PA 316..470 333..492 187 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24278-PA 575 GD24278-PA 1..575 1..575 3069 98.8 Plus
Dsim\GD25465-PA 674 GD25465-PA 316..470 333..492 191 34 Plus
Dsim\GD20254-PA 328 GD20254-PA 15..171 333..494 170 29.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17511-PA 576 GJ17511-PA 1..576 1..575 2234 76.6 Plus
Dvir\GJ19196-PA 611 GJ19196-PA 113..516 112..498 369 31.9 Plus
Dvir\GJ20899-PA 682 GJ20899-PA 316..470 333..492 193 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14912-PA 576 GK14912-PA 1..576 1..575 2554 86.5 Plus
Dwil\GK10107-PA 610 GK10107-PA 114..511 112..498 386 31.3 Plus
Dwil\GK21401-PA 681 GK21401-PA 316..490 333..513 202 32.8 Plus
Dwil\GK13906-PA 579 GK13906-PA 142..458 164..517 181 23 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12344-PA 575 GE12344-PA 1..575 1..575 3001 96.5 Plus
Dyak\GE16528-PA 572 GE16528-PA 106..476 104..498 382 30.4 Plus
Dyak\GE26110-PA 581 GE26110-PA 121..348 140..413 196 25.1 Plus
Dyak\GE13986-PA 674 GE13986-PA 316..470 333..492 186 33.9 Plus