Clone LD10783 Report

Search the DGRC for LD10783

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:107
Well:83
Vector:pBS SK-
Associated Gene/TranscriptScpX-RA
Protein status:LD10783.pep: gold
Preliminary Size:1943
Sequenced Size:1916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17320 2001-01-01 Release 2 assignment
CG17320 2001-11-09 Blastp of sequenced clone
CG17320 2003-01-01 Sim4 clustering to Release 3
ScpX 2008-04-29 Release 5.5 accounting
ScpX 2008-08-15 Release 5.9 accounting
ScpX 2008-12-18 5.12 accounting

Clone Sequence Records

LD10783.complete Sequence

1916 bp (1916 high quality bases) assembled on 2001-11-09

GenBank Submission: AY089539

> LD10783.complete
AAGGCTTAAGCCTCCTAATATCGCCAACAATCGCCATTCATTTTAACATT
TAGTTAATTGCTCTTGAGCACTAGTTGTGGTATTACCTGTTTTACTCGCG
ATCCTGTAGCTGCAAAATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGG
GCATGACCAAGTTCGAGAAGCCCGGTCGCCAAGCTGATGTGTGCTACCCG
GATTTCGCTAGGGAGGCCATCACAAAAGCTCTCCAGGATGCGGGCATCAA
GTACGAGGAAGTGCAGCAGGCGGTGGCCGGCTACGTTTATGGAGACTCCA
CCTGCGGACAGCGGGCCATCTACGAGGTCGGAATGACCGGCATTCCGGTC
TATAACGTCAACAACAACTGCTCCACGGGATCCAGTGCTTTGTATTTGGC
CAAGCAGATCGTGGAGAGCGGAAACGCAGATTGCGTCCTGGCTTTGGGAT
TTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGTACTTTGATCGCGCC
AATCCCATGGAGCGTCACATCACCGAGATGGGTGAGCTGGCCGAGATCGG
AGCTGGCCCAATGGCTGCCCAGATCTTCGGCAATGCCGGCAAAGAGCACA
TGAAGAAGTATGGCACTAAGCCCGAGCATTTCGGCAAGATCGCTTGGAAG
AACCACAAGCACTCCGTCAATAATCCCTACTCGCAGTTCCGCGATGAATA
CACCCTGGAGCAGATTATGAAGTCGCCCCAGGTTGTGGAGGGAGTGCTGA
CCAAGCTGCAGTGTTGTCCCACTTCCGATGGATCTGGAGCTGCCATTCTC
GCCTCCGAGGCCTTCGTGCGTCGCCACGGATTGGAAAAGCAGGCTGTCGA
AATTGTAGGCATGGAGATGGCCAGTGACCCGGCGTCCACCTTTGCCGACA
AGAGCTTGATGAAGATTGCTGGAACCGATATGACCCGTCTGGCCACCCAG
CGTCTGTTCGCAAAGAGTGGGTACAAGCCCCAGGATGTCCAGGTTGTGGA
ACTGCACGATTGCTTCTCGGCCAACGAGTTGATCACGTATGAGGCACTTG
GACTGTGTGGAGAGGGCAACGCCGGCGAGTTCATCGACGCTGGAGACAAC
ACCTACGGTGGCAAGTTCGTGGTCAACCCCAGTGGTGGTCTGATCTCGAA
GGGCCATCCTCTGGGCGCCACGGGTCTGGCACAATGTGCTGAGCTCTGCT
GGCAGCTCCGTGGATTGGCTGAGAAGCGCCAGGTGCCCAATGCTCAGTTG
GCTTTGCAGCACAATCTGGGACTGGGTGGTGCCGTTGTGGTTGCCTTGTA
TCGTCTGGGTTTCCCAGCTGCCAACAGCGTGGTTCGCAATCTGACCGCTG
CGGGCAAGGCTGCTACCAGTGAGGATGGCTTTAAGGTTGCGCCCCTGCTG
AAACTATTGGAGCAGGCCATGCAGGAGGATAAGGACAATCTGATCGAAAA
GGTGCGCGCCATTTACGGCTTTAAGGTCAACAACGGACCCAATGGACAGA
CCGGTTTCTGGGTAATTGATGCCAAGCAGGGCAAGGGAAAGATCATCTTC
AATGGAACACAAAAATGTGACGTTACCTTTATCATTAGCGACGATGATGT
CTTTGAGCTGCTAACAGGAAAGCTGCCACCACAGAAGGCCTTTTTCCAGG
GCAAGATCAAGATCCAGGGCAACATGGGCTTTGCCATGAAACTGATGGAC
CTGCAGCGATCCGCCCAAGGCAGGATCGAGGAGCTGCGCTCCAAGCTATA
GGCTCCTCTTCTTGTGCAATGCAGCATCTTGGTGGCTTTGGATCTGTTAA
ACCTAGTTATATGAATATATCCAGCATACGCTTTTTATACGACTTTTGTA
TTATTTCTCTAGATTAAACTGTTATTTTCGTAATCGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

LD10783.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-RA 2027 ScpX-RA 42..1930 1..1889 9430 99.9 Plus
ScpX.d 2615 ScpX.d 42..1930 1..1889 9430 99.9 Plus
ScpX.a 1899 ScpX.a 175..1899 162..1886 8610 99.9 Plus
ScpX.a 1899 ScpX.a 42..174 1..133 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18831115..18831998 677..1560 4390 99.8 Plus
chr2L 23010047 chr2L 18827852..18828490 1315..677 3030 98.3 Minus
chr2L 23010047 chr2L 18830475..18830800 160..485 1615 99.7 Plus
chr2L 23010047 chr2L 18832061..18832386 1561..1886 1615 99.7 Plus
chr2L 23010047 chr2L 18828897..18829216 479..160 1240 92.5 Minus
chr2L 23010047 chr2L 18830858..18831050 484..676 950 99.5 Plus
chr2L 23010047 chr2L 18828641..18828833 676..484 845 95.9 Minus
chr2L 23010047 chr2L 18829980..18830140 1..161 805 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18832361..18833244 677..1560 4420 100 Plus
2L 23513712 2L 18829098..18829736 1315..677 3045 98.4 Minus
2L 23513712 2L 18833305..18833633 1561..1889 1645 100 Plus
2L 23513712 2L 18831721..18832046 160..485 1630 100 Plus
2L 23513712 2L 18830143..18830462 479..160 1240 92.5 Minus
2L 23513712 2L 18832104..18832296 484..676 950 99.5 Plus
2L 23513712 2L 18829887..18830079 676..484 845 95.9 Minus
2L 23513712 2L 18831226..18831386 1..161 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18832361..18833244 677..1560 4420 100 Plus
2L 23513712 2L 18829098..18829736 1315..677 3045 98.4 Minus
2L 23513712 2L 18833305..18833633 1561..1889 1645 100 Plus
2L 23513712 2L 18831721..18832046 160..485 1630 100 Plus
2L 23513712 2L 18830143..18830462 479..160 1240 92.5 Minus
2L 23513712 2L 18832104..18832296 484..676 950 99.4 Plus
2L 23513712 2L 18829887..18830079 676..484 845 95.8 Minus
2L 23513712 2L 18831226..18831386 1..161 805 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:32:47 has no hits.

LD10783.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:33:54 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18829980..18830140 1..161 100 -> Plus
chr2L 18830477..18830800 162..485 99 -> Plus
chr2L 18830860..18831050 486..676 99 -> Plus
chr2L 18831115..18831998 677..1560 99 -> Plus
chr2L 18832061..18832386 1561..1886 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:32 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1635 117..1751 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:52 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1635 117..1751 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:47 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1635 117..1751 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:28 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1635 117..1751 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:41 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1635 117..1751 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:35 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 42..1927 1..1886 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:52 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 42..1927 1..1886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:47 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1883 4..1886 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:28 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 11..1896 1..1886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:41 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
ScpX-RA 1..1883 4..1886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:54 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18832106..18832296 486..676 99 -> Plus
2L 18831226..18831386 1..161 100 -> Plus
2L 18833305..18833630 1561..1886 100   Plus
2L 18831723..18832046 162..485 100 -> Plus
2L 18832361..18833244 677..1560 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:54 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18832106..18832296 486..676 99 -> Plus
2L 18831226..18831386 1..161 100 -> Plus
2L 18833305..18833630 1561..1886 100   Plus
2L 18831723..18832046 162..485 100 -> Plus
2L 18832361..18833244 677..1560 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:54 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18832106..18832296 486..676 99 -> Plus
2L 18831226..18831386 1..161 100 -> Plus
2L 18833305..18833630 1561..1886 100   Plus
2L 18831723..18832046 162..485 100 -> Plus
2L 18832361..18833244 677..1560 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:47 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18831226..18831386 1..161 100 -> Plus
arm_2L 18831723..18832046 162..485 100 -> Plus
arm_2L 18832106..18832296 486..676 99 -> Plus
arm_2L 18832361..18833244 677..1560 100 -> Plus
arm_2L 18833305..18833630 1561..1886 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:47 Download gff for LD10783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18831723..18832046 162..485 100 -> Plus
2L 18832106..18832296 486..676 99 -> Plus
2L 18832361..18833244 677..1560 100 -> Plus
2L 18833305..18833630 1561..1886 100   Plus
2L 18831226..18831386 1..161 100 -> Plus

LD10783.hyp Sequence

Translation from 116 to 1750

> LD10783.hyp
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKL*

LD10783.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-PA 544 CG17320-PA 1..544 1..544 2821 100 Plus
CG17597-PB 407 CG17597-PB 1..402 1..402 2046 96.5 Plus
CG17597-PA 407 CG17597-PA 1..402 1..402 2046 96.5 Plus

LD10783.pep Sequence

Translation from 116 to 1750

> LD10783.pep
MSKTRVYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQ
QAVAGYVYGDSTCGQRAIYEVGMTGIPVYNVNNNCSTGSSALYLAKQIVE
SGNADCVLALGFEKMERGSLSSKYFDRANPMERHITEMGELAEIGAGPMA
AQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQI
MKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGME
MASDPASTFADKSLMKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCF
SANELITYEALGLCGEGNAGEFIDAGDNTYGGKFVVNPSGGLISKGHPLG
ATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFP
AANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIY
GFKVNNGPNGQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLT
GKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRIEELRSKL*

LD10783.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15421-PA 544 GF15421-PA 1..544 1..544 2826 96 Plus
Dana\GF14486-PA 407 GF14486-PA 1..403 1..403 2081 94.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21137-PA 544 GG21137-PA 1..544 1..544 2886 98.5 Plus
Dere\GG21682-PA 407 GG21682-PA 1..402 1..402 2130 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10548-PA 544 GH10548-PA 1..544 1..544 2690 90.8 Plus
Dgri\GH11197-PA 407 GH11197-PA 1..403 1..403 2015 91.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
ScpX-PA 544 CG17320-PA 1..544 1..544 2821 100 Plus
CG17597-PB 407 CG17597-PB 1..402 1..402 2046 96.5 Plus
CG17597-PA 407 CG17597-PA 1..402 1..402 2046 96.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20976-PA 544 GI20976-PA 1..544 1..544 2709 91 Plus
Dmoj\GI18118-PA 407 GI18118-PA 1..403 1..403 2062 93.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19449-PA 544 GL19449-PA 1..544 1..544 2767 94.1 Plus
Dper\GL18688-PA 407 GL18688-PA 1..402 1..402 2064 94.3 Plus
Dper\GL18687-PA 407 GL18687-PA 1..402 1..402 2064 94.3 Plus
Dper\GL15354-PA 298 GL15354-PA 1..293 110..402 1494 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25964-PA 544 GA25964-PA 1..544 1..544 2769 94.1 Plus
Dpse\GA25753-PA 85 GA25753-PA 25..80 347..402 272 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17298-PA 544 GM17298-PA 1..544 1..544 2866 97.8 Plus
Dsec\GM17061-PA 407 GM17061-PA 1..402 1..402 2040 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24161-PA 544 GD24161-PA 1..544 1..544 2896 98.9 Plus
Dsim\GD21807-PA 407 GD21807-PA 1..403 1..403 2125 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16125-PA 543 GJ16125-PA 1..543 1..544 2703 91.4 Plus
Dvir\GJ17742-PA 407 GJ17742-PA 1..403 1..403 2060 93.3 Plus
Dvir\GJ17743-PA 93 GJ17743-PA 2..65 37..113 180 54.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15532-PA 544 GK15532-PA 1..544 1..544 2763 93 Plus
Dwil\GK15533-PA 407 GK15533-PA 1..402 1..402 2055 93.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13211-PA 544 GE13211-PA 1..544 1..544 2898 99.1 Plus
Dyak\GE12703-PA 407 GE12703-PA 1..403 1..403 2129 97 Plus