Clone LD10857 Report

Search the DGRC for LD10857

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:108
Well:57
Vector:pBS SK-
Associated Gene/TranscriptCG8239-RA
Protein status:LD10857.pep: gold
Preliminary Size:1637
Sequenced Size:1518

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8239 2001-11-09 Blastp of sequenced clone
CG8239 2003-01-01 Sim4 clustering to Release 3
CG8239 2008-04-29 Release 5.5 accounting
CG8239 2008-08-15 Release 5.9 accounting
CG8239 2008-12-18 5.12 accounting

Clone Sequence Records

LD10857.complete Sequence

1518 bp (1518 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069410

> LD10857.complete
AGCAGCTGAAAACAAGTGAATTTCTGAATTAAAAACATTTTCAAACATGT
TTTCGGTTACTTGTGTGGCGCCCGTAAACATAGCGCTCATCAAATATTGG
GGAAAGCGGCACGAAGAGCTAATTCTGCCCGTCAATGATTCCATTAGCAT
GACTCTGAGCACCGATGAGCTCTGCGCCAAGACAACAGTGACTGCATCGG
AATCCTTTGAAACGAATCGCATGTGGCTGAATGGGGAGGAGGTGCCTTTT
GAAGAGAGTTCCCGCCTGCAGCGCTGTTTGAATGAAGTTCATCGATTGGC
TGTGGCGAGTGGCTCCCAGAAGGTTCCGCCAACCTGGAAGCTGCACATCG
CATCGGTAAACAATTTCCCCACCGCCGCCGGACTGGCATCCAGTGCAGCT
GGCTACGCCTGCCTGGTGTACTCCCTGTCCCGACTCTACGATATACCGCT
GAATGAGGAGCTGACGACGGTGGCGCGGCAAGGAAGTGGATCGGCATGTC
GCAGTCTGTATGGCGGTTTTGTGCAGTGGCATCGCGGAGCTCTGGATGAT
GGCAGCGATTCGGTGGCGAGGCAAATAGCTCCATCCGACCACTGGCCCAA
CATGCATGTGCTCATCCTGGTCGTTAACGATGCACGCAAGAAGACTGCCT
CGACAAGGGGCATGCAACAGGCGGTGAAGACGTCTCAGTTGATCAAACAT
CGCGTGGATCAAGTGGTTCCCGACCGGATTATCCGATTGAGGGAGGCCAT
CGCAAGCCATGACTTTCAGGCATTCGCCGAGATAACGATGAAGGACTCGA
ATCAGTTCCATGCCATCGCCCTGGACACCTATCCGCCGTGTGTCTACATG
AACGATGTGTCGCACAGTATCGTGTCCTTCGTTCACGATTATAACGAACG
AATGGGTAGCTATCATGCCGCGTACACCTTCGATGCTGGTCCAAATGCAT
GCCTCTATGTCCTGGCGGAGCACGTTCCGCATCTCTTGAGCGCTATCCAA
AAGGTGTTCCCCAATGATTTAGCGGATGGTGGCACCTACTTGCGAGGCCT
TCCCATTCCAAAAGTGCAAGATGCTGAGAGCAGCAAGTTGGATTCACTAG
ATGTTCATGCTAAAAATGCTTTCAGATATATAATCCACACGAAAGTCGGT
GAAGGACCAAAAGAATTAAGCGCTGATAATAGTTTATTGATAAATGGACT
TCCGCTGAAGTGATGAGAGTGATTTTGAGAGTGAATTGCATAGGGAAAGG
CACAGAAATTCTATAAAGGAAATATTTTTTAGAATATATTTATGCGAAAA
TACATTTATCAAAATGTACAATGGGGCACAATGTATAAACATTTAAAATG
CGCACGATTATTCATTATTACGTGACTAAATTTGAATATCTCAATTGCAA
CAACTTAATTTATTCTCTTTATTTATTTTTACCTTATTTATTTATGAATT
CCGGTGAACAAATGATTGGCTATTTTTAAATAAAATTATGAAAAACGGAA
AAAAAAAAAAAAAAAAAA

LD10857.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RA 1574 CG8239-RA 55..1555 1..1501 7505 100 Plus
CG8239.c 1913 CG8239.c 55..1555 1..1501 7505 100 Plus
CG8239.b 1892 CG8239.b 30..1534 1..1501 7440 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15639839..15641051 286..1498 6020 99.8 Plus
chrX 22417052 chrX 15639661..15639780 168..287 600 100 Plus
chrX 22417052 chrX 15639037..15639135 1..99 495 100 Plus
chrX 22417052 chrX 15639196..15639266 99..169 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15751223 286..1501 6080 100 Plus
X 23542271 X 15749830..15749949 168..287 600 100 Plus
X 23542271 X 15749206..15749304 1..99 495 100 Plus
X 23542271 X 15749365..15749435 99..169 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15758106..15759321 286..1501 6080 100 Plus
X 23527363 X 15757928..15758047 168..287 600 100 Plus
X 23527363 X 15757304..15757402 1..99 495 100 Plus
X 23527363 X 15757463..15757533 99..169 355 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:09:18 has no hits.

LD10857.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:09:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15639663..15639780 170..287 100 -> Plus
chrX 15639037..15639134 1..98 100 -> Plus
chrX 15639196..15639266 99..169 100 -> Plus
chrX 15639841..15641051 288..1498 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:33 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 47..1213 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 47..1213 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:59 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 47..1213 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:29 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 47..1213 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:59 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 1..1167 47..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:37 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 30..1527 1..1498 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 30..1527 1..1498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:59 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 41..1538 1..1498 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:30 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 30..1527 1..1498 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:59 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 41..1538 1..1498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
X 15749832..15749949 170..287 100 -> Plus
X 15749365..15749435 99..169 100 -> Plus
X 15749206..15749303 1..98 100 -> Plus
X 15750010..15751220 288..1498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
X 15749832..15749949 170..287 100 -> Plus
X 15749365..15749435 99..169 100 -> Plus
X 15749206..15749303 1..98 100 -> Plus
X 15750010..15751220 288..1498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:54 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
X 15749832..15749949 170..287 100 -> Plus
X 15749365..15749435 99..169 100 -> Plus
X 15749206..15749303 1..98 100 -> Plus
X 15750010..15751220 288..1498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:59 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643865..15643982 170..287 100 -> Plus
arm_X 15643239..15643336 1..98 100 -> Plus
arm_X 15643398..15643468 99..169 100 -> Plus
arm_X 15644043..15645253 288..1498 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:49 Download gff for LD10857.complete
Subject Subject Range Query Range Percent Splice Strand
X 15758108..15759318 288..1498 100   Plus
X 15757304..15757401 1..98 100 -> Plus
X 15757463..15757533 99..169 100 -> Plus
X 15757930..15758047 170..287 100 -> Plus

LD10857.pep Sequence

Translation from 46 to 1212

> LD10857.pep
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLK*

LD10857.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15902-PA 800 GF15902-PA 1..266 59..324 1083 74.4 Plus
Dana\GF19747-PA 50 GF19747-PA 1..42 1..42 204 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17907-PA 388 GG17907-PA 1..387 1..388 1888 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20637-PA 393 GH20637-PA 1..391 1..387 1438 69.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Mvd-PB 388 CG8239-PB 1..388 1..388 2021 100 Plus
Mvd-PA 388 CG8239-PA 1..388 1..388 2021 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19000-PA 379 GI19000-PA 1..377 12..387 1416 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14496-PA 406 GL14496-PA 1..404 1..387 1472 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20922-PA 82 GA20922-PA 1..41 42..82 160 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22575-PA 354 GM22575-PA 1..341 1..341 1794 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19966-PA 390 GJ19966-PA 1..388 1..387 1446 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17667-PA 396 GK17667-PA 1..393 1..387 1472 71.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17215-PA 391 GE17215-PA 1..390 1..388 1885 91.5 Plus

LD10857.hyp Sequence

Translation from 46 to 1212

> LD10857.hyp
MFSVTCVAPVNIALIKYWGKRHEELILPVNDSISMTLSTDELCAKTTVTA
SESFETNRMWLNGEEVPFEESSRLQRCLNEVHRLAVASGSQKVPPTWKLH
IASVNNFPTAAGLASSAAGYACLVYSLSRLYDIPLNEELTTVARQGSGSA
CRSLYGGFVQWHRGALDDGSDSVARQIAPSDHWPNMHVLILVVNDARKKT
ASTRGMQQAVKTSQLIKHRVDQVVPDRIIRLREAIASHDFQAFAEITMKD
SNQFHAIALDTYPPCVYMNDVSHSIVSFVHDYNERMGSYHAAYTFDAGPN
ACLYVLAEHVPHLLSAIQKVFPNDLADGGTYLRGLPIPKVQDAESSKLDS
LDVHAKNAFRYIIHTKVGEGPKELSADNSLLINGLPLK*

LD10857.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PB 388 CG8239-PB 1..388 1..388 2021 100 Plus
CG8239-PA 388 CG8239-PA 1..388 1..388 2021 100 Plus