Clone LD10878 Report

Search the DGRC for LD10878

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:108
Well:78
Vector:pBS SK-
Associated Gene/TranscriptCG11652-RA
Protein status:LD10878.pep: gold
Preliminary Size:1874
Sequenced Size:1774

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11652 2001-01-01 Release 2 assignment
CG11652 2001-11-09 Blastp of sequenced clone
CG11652 2003-01-01 Sim4 clustering to Release 3
CG11652 2008-04-29 Release 5.5 accounting
CG11652 2008-08-15 Release 5.9 accounting
CG11652 2008-12-18 5.12 accounting

Clone Sequence Records

LD10878.complete Sequence

1774 bp (1774 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069411

> LD10878.complete
ATTGGTTCAATCAGCTGTTGTCATTCGACATTCGCACGCGGGATTGGAAA
GAAATAACTAAAACGTTTTTAAAGCACGCTTAAAGATCAAAAATTCACCA
TGTTGGACGTGATCCAACCCAGCAGCAACCTCCCGACCAGCGAAAGCACC
GATATTGTGGTGGTCCGAGCCAGACCAAAGAAGGTGTTCAAGCCAAAGGC
GCGCATCAATCGGATTCCCCAGGAGCTGCTCGATGATCCACTGCTGCAGC
AGGCCATCGACCGTCTGCCCTCGAACTACAACTTCGAGATGCACAAGACG
ATTTGGCGCATACGGGAGATGAAGGCCAAGCGTGTGGCCCTGCAACTGCC
GGAGGGCCTGCTGATGTACGCCATGGTTATCAGCGACATTGTGGAGCGAT
TCACCAGCGCAGATACTGTGATAATGGGCGATGTGACTTACGGAGCTTGC
TGCGTGGACGACTACACTGCCAAGGCGTTGGGAGCTGATCTGCTGGTCCA
CTACGGCCACAGCTGCCTCATTCCCGTAGATCAGACGTGTGGCATCAAGG
TGCTGTACATTTTTGTAGACATCAAAATCGATCCGCTGCACTTCCTGGAC
TCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGCCAAATAGCTTTAGTAAG
CACAATACAGTTCGTGACAACGCTGCAAGCTGCATCTACTGAGCTAAAGG
CAGCCGGCTATGATGTGATAGTACCACAGGCCAAGCCACTTAGTCCTGGA
GAGATTCTTGGGTGCACTTCGCCTCAGCTGCCAGAGACAACGAAGATGAT
AATATATTTGGGTGACGGGCGTTTTCATCTAGAATCCGCAATGATAGCAA
ACCCGTTGCTAAAGGCTTACAAGTACGATCCCTATGAAAAGAAGTTCACC
ACAGAGCAGTACGATCACTCGGCGATGCAGAATCTGCGCCTGGACGCTGT
TCAGCGGGCTAAGAAGGCGCGCCGCATTGGCATCATACTTGGAACACTCG
GAAGACAAGGCAGTTCAAGAGTGCATCGGTTTTTGGAGAAGCGACTTCAT
GCCAAGGGTATTGAAACTACCACATTATTGCTGTCGGAGATCTTCCCACA
GAAATTGGCTCTTTTCGCCGACATCGACGCCTTTGTGCAGATTGCTTGTC
CGCGACTTTCAATCGACTGGGGATCCGCATTTAGCCAACCGTTGCTGAAT
CCTTACGAGCTGTCCGTGGTTTTGGGCGATGTCGAGTGGACGCCGCACAA
CTCGTCGCCGCGCAACAACGCCTATCCCATGGACTTCTACGCTAGCGGCA
GCCTGGGACCCTGGACTCCCAACTTCAAGCCACCAGCGATAGGAGAGTGC
GAGAACAAGCCCTCGGCTGACTGTTGTGGAAGATGCACGCGAGCGGAATT
GGAGAAGGACGATTCCGGCAAGGCAGCGGCTCTGGACGATCTTCTCGACT
TTAAGAAGGGATAAGCGATTTGACCGGCTCGCTTCCAACTGCCCACGGAG
CCCTCCATCTCAATCGATCAGCCACGATCGCCTGCCCAAATATATTGATT
ACCTACTAATTTAGTTAGTACAAATTTGGTTTTTAAGTTCTTACTTTAAG
GGCATCTTTTGTGTTCATCACAGATAGGTTCATAATTTTTATGTTCGCAA
ACACTTTTCTAACAGAGATGCAATTGTTAATTAGCAGCAACAATGTACAG
AATTTTAAACATTAAAATAATGTTTAAAACGAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAAAAAAAAAAAAAA

LD10878.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-RA 1823 CG11652-RA 42..1775 1..1734 8670 100 Plus
CG11652.d 2775 CG11652.d 18..1751 1..1734 8670 100 Plus
CG11652.b 2990 CG11652.b 328..1966 96..1734 8195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11684773..11685644 1734..863 4180 98.6 Minus
chr3L 24539361 chr3L 11685706..11686475 865..96 3820 99.7 Minus
chr3L 24539361 chr3L 11687772..11687866 95..1 430 96.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11693876..11694747 1734..863 4360 100 Minus
3L 28110227 3L 11694809..11695578 865..96 3850 100 Minus
3L 28110227 3L 11696875..11696969 95..1 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11686976..11687847 1734..863 4360 100 Minus
3L 28103327 3L 11687909..11688678 865..96 3850 100 Minus
3L 28103327 3L 11689975..11690069 95..1 475 100 Minus
Blast to na_te.dros performed 2019-03-15 15:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 6711..6764 1701..1752 148 82.1 Plus

LD10878.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:33 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11684782..11685642 865..1725 98 <- Minus
chr3L 11685707..11686475 96..864 99 <- Minus
chr3L 11687772..11687866 1..95 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:35 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 1..1365 100..1464 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:56 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 1..1365 100..1464 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:42:32 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 1..1365 100..1464 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:32 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RB 1..1365 100..1464 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:40 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 1..1365 100..1464 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:40 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 18..1742 1..1725 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:56 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 18..1742 1..1725 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:32 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 1..1719 7..1725 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:32 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 18..1742 1..1725 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:40 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
CG11652-RA 1..1719 7..1725 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:33 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11693885..11694745 865..1725 100 <- Minus
3L 11694810..11695578 96..864 100 <- Minus
3L 11696875..11696969 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:33 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11693885..11694745 865..1725 100 <- Minus
3L 11694810..11695578 96..864 100 <- Minus
3L 11696875..11696969 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:33 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11693885..11694745 865..1725 100 <- Minus
3L 11694810..11695578 96..864 100 <- Minus
3L 11696875..11696969 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:32 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11686985..11687845 865..1725 100 <- Minus
arm_3L 11687910..11688678 96..864 100 <- Minus
arm_3L 11689975..11690069 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:52 Download gff for LD10878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11687910..11688678 96..864 100 <- Minus
3L 11686985..11687845 865..1725 100 <- Minus
3L 11689975..11690069 1..95 100   Minus

LD10878.hyp Sequence

Translation from 99 to 1463

> LD10878.hyp
MLDVIQPSSNLPTSESTDIVVVRARPKKVFKPKARINRIPQELLDDPLLQ
QAIDRLPSNYNFEMHKTIWRIREMKAKRVALQLPEGLLMYAMVISDIVER
FTSADTVIMGDVTYGACCVDDYTAKALGADLLVHYGHSCLIPVDQTCGIK
VLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTELK
AAGYDVIVPQAKPLSPGEILGCTSPQLPETTKMIIYLGDGRFHLESAMIA
NPLLKAYKYDPYEKKFTTEQYDHSAMQNLRLDAVQRAKKARRIGIILGTL
GRQGSSRVHRFLEKRLHAKGIETTTLLLSEIFPQKLALFADIDAFVQIAC
PRLSIDWGSAFSQPLLNPYELSVVLGDVEWTPHNSSPRNNAYPMDFYASG
SLGPWTPNFKPPAIGECENKPSADCCGRCTRAELEKDDSGKAAALDDLLD
FKKG*

LD10878.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11652-PC 454 CG11652-PC 1..454 1..454 2363 100 Plus
CG11652-PB 454 CG11652-PB 1..454 1..454 2363 100 Plus
CG11652-PA 454 CG11652-PA 1..454 1..454 2363 100 Plus
CG7265-PA 469 CG7265-PA 36..369 59..396 254 25.1 Plus

LD10878.pep Sequence

Translation from 99 to 1463

> LD10878.pep
MLDVIQPSSNLPTSESTDIVVVRARPKKVFKPKARINRIPQELLDDPLLQ
QAIDRLPSNYNFEMHKTIWRIREMKAKRVALQLPEGLLMYAMVISDIVER
FTSADTVIMGDVTYGACCVDDYTAKALGADLLVHYGHSCLIPVDQTCGIK
VLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTELK
AAGYDVIVPQAKPLSPGEILGCTSPQLPETTKMIIYLGDGRFHLESAMIA
NPLLKAYKYDPYEKKFTTEQYDHSAMQNLRLDAVQRAKKARRIGIILGTL
GRQGSSRVHRFLEKRLHAKGIETTTLLLSEIFPQKLALFADIDAFVQIAC
PRLSIDWGSAFSQPLLNPYELSVVLGDVEWTPHNSSPRNNAYPMDFYASG
SLGPWTPNFKPPAIGECENKPSADCCGRCTRAELEKDDSGKAAALDDLLD
FKKG*

LD10878.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24524-PA 456 GF24524-PA 1..456 1..454 2299 95 Plus
Dana\GF18124-PA 472 GF18124-PA 38..372 59..396 249 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13898-PA 454 GG13898-PA 1..454 1..454 2424 99.6 Plus
Dere\GG21012-PA 468 GG21012-PA 36..368 59..396 226 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15073-PA 461 GH15073-PA 1..461 1..454 2195 88.3 Plus
Dgri\GH19238-PA 482 GH19238-PA 37..383 63..396 239 24.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dph1-PC 454 CG11652-PC 1..454 1..454 2363 100 Plus
Dph1-PB 454 CG11652-PB 1..454 1..454 2363 100 Plus
Dph1-PA 454 CG11652-PA 1..454 1..454 2363 100 Plus
CG7265-PA 469 CG7265-PA 36..369 59..396 254 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13721-PA 458 GI13721-PA 1..458 1..454 2182 89.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16342-PA 465 GL16342-PA 1..465 1..454 2277 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11120-PA 464 GA11120-PA 1..464 1..454 2276 91.8 Plus
Dpse\GA20222-PA 481 GA20222-PA 42..381 63..396 245 24.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24722-PA 454 GM24722-PA 1..454 1..454 2406 98.9 Plus
Dsec\GM25818-PA 469 GM25818-PA 36..369 59..396 260 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12784-PA 454 GD12784-PA 1..454 1..454 2412 99.1 Plus
Dsim\GD20394-PA 469 GD20394-PA 36..369 59..396 245 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14065-PA 455 GJ14065-PA 1..455 1..454 2178 89 Plus
Dvir\GJ10845-PA 478 GJ10845-PA 34..380 63..396 239 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12405-PA 464 GK12405-PA 1..464 1..454 2221 87.9 Plus
Dwil\GK13830-PA 476 GK13830-PA 40..389 63..411 249 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20188-PA 454 GE20188-PA 1..454 1..454 2426 99.3 Plus
Dyak\GE26423-PA 469 GE26423-PA 36..369 59..396 241 24.7 Plus