Clone LD10908 Report

Search the DGRC for LD10908

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:109
Well:8
Vector:pBS SK-
Associated Gene/TranscriptElba2-RA
Protein status:LD10908.pep: gold
Preliminary Size:1609
Sequenced Size:1529

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9883 2001-01-01 Release 2 assignment
CG9883 2001-11-09 Blastp of sequenced clone
CG9883 2003-01-01 Sim4 clustering to Release 3
CG9883 2008-04-29 Release 5.5 accounting
CG9883 2008-08-15 Release 5.9 accounting
CG9883 2008-12-18 5.12 accounting

Clone Sequence Records

LD10908.complete Sequence

1529 bp (1529 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069412

> LD10908.complete
CAGCCCTGCAAGATTAAGATTTTCGGATTCTCAGGTATCTGGCGCAAGGA
ACAATAACTGTTAAGCCGGGCCATAAAACACCAATTTTTCCAACGAATAA
TACGCAAAATAAGCCAAGAAAGCCGACGCAGCTGCGTTTTTTGCCAGAAA
TAAACCTTTTTGCCTTTACCTGTTGCCAAAATCCGCGTGCAAATGGCCGG
CGGATTTCGACCGTACGATCAGGACTCGTGTCCTAACCTTACAAATAGCG
AGGCTCCGGAATTCAGCATGTCAGTCGTTTGCAAAACGGAGCCGCACTAC
TTTCATCCGCAGACTGCTATCCTGCCCAGCGTCCAGTACTCCCACCCATA
TCACCACTATCTGAGCCAGTTCGCCCCGAACTTCGTGCCCTACTACTACC
GCCTGCTCTCGCGGCCCATAATGAAGCAGGAGGAGATGGACATCGAGAAC
TACATCAACTACGAGGTGGCCGCCCAGCAGACCATGATGCGCCAGCGGAC
CCTGAAGCCCCTGGGTCAGCTGCAGATCCAAATGCCGCCTCCCATAATAG
TCAACCAGCCAGTTAAGCCAGTTCCCGTTAAGGCAGTGCCAGTCCGCCGA
AGCTCTCCGCCCAAGCGACGCGTCATCAATGCCCAGTTGGTAGCGGTAGC
CACCGCTTCCGGGGGCATTAAGAACATCGAACCGCGGGTGGAGCCACTGC
CTCGCCTGGAGGAATCCTTTAAGCAGCAAGTGGCCAAAATCCAGAAGAGT
CAGCACCACTACGAACAACTCTTTGGTCGTCTCACTTCCATGCTAAAGAC
CCTGAATCAGCGGTACGACAACGATGCCGAGGATGTGCCCGCGCCGCCCT
CCAAGAGACCGCGCCACATGTCCACCAGTTCGTCGGAATCGCACATCCCA
GATACTGCCTCTGAAAAGGACGAGAAAGACACTCTTGTGCAGTACCCGCA
CCGAGTGCAAAAGGAGGACGGCAGTGCGGTGTACGTACTGGGACCCAATG
GCACCCAGATCACAGCCCATCAGTACGGTGAGGTCTTCTGGACCAACGCC
CCGGTGGCCACGAGGTGTCTTCTTTGCGTTGTCTTCAGCAGCGATGAGTT
GGCTACCCACACGCTGACCGGGAAGCCGTCGCCCGCATTCTACGGCCGCG
AAAGACCCCCAAAGCTCCAGTTAGACCAACGCAAGGTGGACGACATCGTG
GTCTGTGTGAGAAACCGGACGGGCGGCAAGGAACGGGTGATTCGGGCCAC
CATCACTACCAAGTGTGCGGATACCGCCAAGAAGTACAAGAGGCGGGCCA
AGAAGGCCCAGAAGGTCGCCATCAAGGAGGAGTATTAGCATGGAGTGGAC
AACTATTGGCTAGATATAATCCAGCTATGATCAAGCTCTTCTCAACGACG
CGCCACGAAAGGCGCAGAAAGACATTGTATATATTCGTAGTAGGTCCTGC
TAAAAGTAAAAGTAAAGTTATATAATCTAGCTGTGATTGAATAAAGACAA
GATGAAACCAAAAAAAAAAAAAAAAAAAA

LD10908.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9883-RA 1510 CG9883-RA 1..1510 1..1510 7550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2577470..2578984 1..1509 7240 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2577671..2579181 1..1511 7555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2577671..2579181 1..1511 7555 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:49:40 has no hits.

LD10908.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:35 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2577470..2578984 1..1509 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:36 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1146 193..1338 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:45 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1146 193..1338 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:42:34 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 1..1146 193..1338 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:22 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1146 193..1338 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:42 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 1..1146 193..1338 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:25 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1509 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:45 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1509 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:34 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 1..1493 17..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:22 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 1..1509 1..1509 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:42 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 1..1493 17..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:35 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2577671..2579179 1..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:35 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2577671..2579179 1..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:35 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2577671..2579179 1..1509 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:34 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2577671..2579179 1..1509 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:39 Download gff for LD10908.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2577671..2579179 1..1509 100   Plus

LD10908.hyp Sequence

Translation from 192 to 1337

> LD10908.hyp
MAGGFRPYDQDSCPNLTNSEAPEFSMSVVCKTEPHYFHPQTAILPSVQYS
HPYHHYLSQFAPNFVPYYYRLLSRPIMKQEEMDIENYINYEVAAQQTMMR
QRTLKPLGQLQIQMPPPIIVNQPVKPVPVKAVPVRRSSPPKRRVINAQLV
AVATASGGIKNIEPRVEPLPRLEESFKQQVAKIQKSQHHYEQLFGRLTSM
LKTLNQRYDNDAEDVPAPPSKRPRHMSTSSSESHIPDTASEKDEKDTLVQ
YPHRVQKEDGSAVYVLGPNGTQITAHQYGEVFWTNAPVATRCLLCVVFSS
DELATHTLTGKPSPAFYGRERPPKLQLDQRKVDDIVVCVRNRTGGKERVI
RATITTKCADTAKKYKRRAKKAQKVAIKEEY*

LD10908.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-PA 381 CG9883-PA 1..381 1..381 2006 100 Plus
insv-PB 376 CG3227-PB 172..371 184..380 251 30.5 Plus
insv-PA 376 CG3227-PA 172..371 184..380 251 30.5 Plus
Bsg25A-PA 363 CG12205-PA 249..363 261..374 230 43.5 Plus

LD10908.pep Sequence

Translation from 192 to 1337

> LD10908.pep
MAGGFRPYDQDSCPNLTNSEAPEFSMSVVCKTEPHYFHPQTAILPSVQYS
HPYHHYLSQFAPNFVPYYYRLLSRPIMKQEEMDIENYINYEVAAQQTMMR
QRTLKPLGQLQIQMPPPIIVNQPVKPVPVKAVPVRRSSPPKRRVINAQLV
AVATASGGIKNIEPRVEPLPRLEESFKQQVAKIQKSQHHYEQLFGRLTSM
LKTLNQRYDNDAEDVPAPPSKRPRHMSTSSSESHIPDTASEKDEKDTLVQ
YPHRVQKEDGSAVYVLGPNGTQITAHQYGEVFWTNAPVATRCLLCVVFSS
DELATHTLTGKPSPAFYGRERPPKLQLDQRKVDDIVVCVRNRTGGKERVI
RATITTKCADTAKKYKRRAKKAQKVAIKEEY*

LD10908.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20590-PA 380 GF20590-PA 1..380 1..381 1429 74.9 Plus
Dana\GF23938-PA 378 GF23938-PA 257..374 257..373 245 43.2 Plus
Dana\GF20597-PA 362 GF20597-PA 243..357 266..380 233 40 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24864-PA 380 GG24864-PA 1..380 1..381 1967 97.1 Plus
Dere\GG24506-PA 375 GG24506-PA 242..370 253..380 245 38.8 Plus
Dere\GG24360-PA 370 GG24360-PA 253..370 259..374 237 44.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11155-PA 307 GH11155-PA 1..284 82..361 771 54.2 Plus
Dgri\GH10578-PA 381 GH10578-PA 246..360 252..366 240 39.1 Plus
Dgri\GH13742-PA 377 GH13742-PA 246..371 248..371 230 40.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-PA 381 CG9883-PA 1..381 1..381 2006 100 Plus
insv-PB 376 CG3227-PB 172..371 184..380 251 30.5 Plus
insv-PA 376 CG3227-PA 172..371 184..380 251 30.5 Plus
Bsg25A-PA 363 CG12205-PA 249..363 261..374 230 43.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17861-PA 394 GI17861-PA 66..375 49..361 802 56.3 Plus
Dmoj\GI23044-PA 390 GI23044-PA 265..387 256..379 241 41.1 Plus
Dmoj\GI17884-PA 387 GI17884-PA 259..381 251..371 240 43.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26565-PA 379 GL26565-PA 3..377 2..380 1242 69 Plus
Dper\GL26458-PA 398 GL26458-PA 267..380 252..366 236 41.7 Plus
Dper\GL15989-PA 409 GL15989-PA 291..395 260..363 235 47.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22097-PA 379 GA22097-PA 3..377 2..380 1237 69 Plus
Dpse\GA11475-PA 363 GA11475-PA 245..349 260..363 237 47.6 Plus
Dpse\GA16802-PA 376 GA16802-PA 245..358 252..366 236 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18346-PA 381 GM18346-PA 1..381 1..381 1984 97.1 Plus
Dsec\GM11124-PA 100 GM11124-PA 1..100 1..100 529 97 Plus
Dsec\GM18215-PA 376 GM18215-PA 247..371 256..380 244 39.2 Plus
Dsec\GM18079-PA 363 GM18079-PA 246..363 259..374 238 44.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23161-PA 381 GD23161-PA 1..381 1..381 1992 97.9 Plus
Dsim\GD22821-PA 376 GD22821-PA 243..371 253..380 246 38.8 Plus
Dsim\GD22697-PA 363 GD22697-PA 246..363 259..374 238 44.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17359-PA 374 GJ17359-PA 42..353 49..361 818 56.9 Plus
Dvir\GJ23568-PA 389 GJ23568-PA 273..386 266..379 233 40.4 Plus
Dvir\GJ17385-PA 385 GJ17385-PA 267..379 260..371 231 45.1 Plus
Dvir\GJ17366-PA 170 GJ17366-PA 58..167 257..366 170 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24562-PA 370 GK24562-PA 1..362 1..372 960 55.3 Plus
Dwil\GK23918-PA 387 GK23918-PA 269..382 260..372 250 46.5 Plus
Dwil\GK24494-PA 379 GK24494-PA 248..357 256..366 234 41.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18162-PA 381 GE18162-PA 1..381 1..381 1982 97.1 Plus
Dyak\GE15077-PA 375 GE15077-PA 172..370 184..380 256 32 Plus
Dyak\GE14697-PA 369 GE14697-PA 252..369 259..374 239 44.9 Plus