Clone LD11027 Report

Search the DGRC for LD11027

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:110
Well:27
Vector:pBS SK-
Associated Gene/TranscriptGABPI-RA
Protein status:LD11027.pep: gold
Preliminary Size:1718
Sequenced Size:1549

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17257 2001-01-01 Release 2 assignment
CG17257 2001-11-09 Blastp of sequenced clone
CG17257 2008-04-29 Release 5.5 accounting
CG17257 2008-08-15 Release 5.9 accounting
CG17257 2008-12-18 5.12 accounting

Clone Sequence Records

LD11027.complete Sequence

1549 bp (1549 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069413

> LD11027.complete
AGAAATTTAGGGCGTGCACTAATCTAATCTAAACTGTTTCCGTACACGCT
GCTCGGAACTCATTAAAAAACGTTCGCCGCGCCATTTCCTGTCCAAATCG
ATGTTCTTGATGACAGCCGGCACCTCCAATTTTCTTTCTGCAGCCTGGAG
ATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAACGGGAGTCTCTGCTGCT
GCGAGTACGTGGCTGAGGACAGTCGAGAGCGATCCCACATCCTAGGATGC
TGTTGTAACTGCGTGGACTTCGACTTAGTTTGCACAAGACTTGTCACCTG
CCGAGCCATTGATCGAAGGAACATCGACGGCATGCTCATCGCCTTCCAGG
ATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAAGCGAATCTCGCCCGCA
GCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGCTGGGATTGGCCACTCT
GAACTCAAAGACCGCCATAGTGCTGATGCTCACGCTGGTGGGCTTCACCA
TCTGGGGCATGGAGCTGGCTAAGCGGACCGCCACGCGGACAAACTTCTTT
TTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGATCATCATATTTGAGTT
TCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAGAACTACGCGTTAATGT
TCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTCCGCCAAGGCACTGTCG
CCCTTGAATCTTGTTTCTGCTCAATACGGAACCACGCCCAAGGATGAGCT
GCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAGCAGGCAGAGGCCCAGA
CCACACTCCAGATGGAGAGTGTGCTGAGTTTGGATGATGACGAGGTGGGG
GATATGGACACTGCTGAGCGATCTGGCTTGATGCACGGTCAGCCCAATAT
CTGCGAGATCTGCCGGAAGGTTACTCCAAGGCGGGCATACCACTGTCCCG
TCTGCGGAACCTGCGTGAAGAGGCGCGATCATCACAGCTACTGGCTAAAC
TGCTGCATTGGCGAGCGGAACTACGTGTGGTACATTGTTGGACTGGCCCT
GTCGGAGATCGCTCTGCTGCTCGGCGCAAACTTGACCCTCACTTCCATTT
GCCATCCGTTTATGGTGGTGCGACCGCTTGGTTATCCAGTTCTTTTGCCC
GACGACTGCAGTGAGGTGTTCGAAGGCTTCGACCTCGGAATCTCCTTTGT
GGTGGCTTGCTACGCTCTGCTCATTTCTTCCTACATAGCCTTTATACTCG
CTAGACAGGCTTACTTGTGGTGGAAGGGATCCACCTTGCACGAATACAAG
CGCACCTCCAACGCCGCAGGACGCAACAGAATCTGGAGCAACTGGCGAGC
CATCTTAAAGTGACTACTCACACACCAAAAAGCAAAAAGCACAAGCATGT
CGCTTAGATACTAAAGTATTTCAAATCTTAACGCTGTTCTCGGTAGTCGT
ACTTAGTCGTACCGCTTTGAAGTCTTTATTGCAATTTAAAATTGATTTAA
AATAAATATAATTAAGTAACTCAAAACGCAAAAAAAAAAAAAAAAAAAA

LD11027.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-RA 1627 GABPI-RA 106..1627 8..1529 7610 100 Plus
GABPI.a 1550 GABPI.a 32..1550 11..1529 7595 100 Plus
CG17258.a 2799 CG17258.a 2708..2799 1530..1439 460 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3030637..3031532 287..1182 4480 100 Plus
chr2L 23010047 chr2L 3031593..3031939 1183..1529 1735 100 Plus
chr2L 23010047 chr2L 3030306..3030586 8..288 1405 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031893 287..1182 4480 100 Plus
2L 23513712 2L 3031954..3032301 1183..1530 1740 100 Plus
2L 23513712 2L 3030667..3030947 8..288 1405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3030998..3031893 287..1182 4480 100 Plus
2L 23513712 2L 3031954..3032301 1183..1530 1740 100 Plus
2L 23513712 2L 3030667..3030947 8..288 1405 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:11:49 has no hits.

LD11027.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:02 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3030306..3030586 8..288 100 -> Plus
chr2L 3030639..3031532 289..1182 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:42 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 1..1263 101..1363 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:49 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RA 1..1263 101..1363 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:06 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 1..1263 101..1363 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:22 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RA 1..1263 101..1363 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:07 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 1..1263 101..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:08 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RB 25..1553 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:49 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 1..1529 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:06 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RB 31..1559 1..1529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:22 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
CG17257-RB 25..1553 1..1529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:07 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
GABPI-RA 129..1650 8..1529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:02 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030667..3030947 8..288 100 -> Plus
2L 3031000..3031893 289..1182 100 -> Plus
2L 3031954..3032300 1183..1529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:02 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030667..3030947 8..288 100 -> Plus
2L 3031000..3031893 289..1182 100 -> Plus
2L 3031954..3032300 1183..1529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:02 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030667..3030947 8..288 100 -> Plus
2L 3031000..3031893 289..1182 100 -> Plus
2L 3031954..3032300 1183..1529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:06 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3031954..3032300 1183..1529 100   Plus
arm_2L 3030667..3030947 8..288 100 -> Plus
arm_2L 3031000..3031893 289..1182 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:36 Download gff for LD11027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3030667..3030947 8..288 100 -> Plus
2L 3031000..3031893 289..1182 100 -> Plus
2L 3031954..3032300 1183..1529 100   Plus

LD11027.pep Sequence

Translation from 100 to 1362

> LD11027.pep
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILK*

LD11027.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14396-PA 414 GF14396-PA 1..414 4..420 1817 82 Plus
Dana\GF13019-PA 280 GF13019-PA 93..137 268..312 152 48.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24913-PA 420 GG24913-PA 1..420 1..420 2158 95.2 Plus
Dere\GG10348-PA 276 GG10348-PA 79..168 248..326 152 33.3 Plus
Dere\GG12218-PA 283 GG12218-PA 72..162 226..325 149 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11398-PA 427 GH11398-PA 7..427 8..420 1502 69.1 Plus
Dgri\GH13330-PA 278 GH13330-PA 79..170 248..326 152 34.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-PA 420 CG17257-PA 1..420 1..420 2230 100 Plus
GABPI-PB 420 CG17257-PB 1..420 1..420 2230 100 Plus
GABPI-PD 343 CG17257-PD 1..343 78..420 1809 100 Plus
GABPI-PC 343 CG17257-PC 1..343 78..420 1809 100 Plus
Dnz1-PA 276 CG6627-PA 103..168 267..326 159 40.9 Plus
CG1407-PC 227 CG1407-PC 124..193 261..330 150 37.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14529-PA 411 GI14529-PA 16..411 26..420 1457 69 Plus
Dmoj\GI17805-PA 277 GI17805-PA 78..169 242..326 166 37 Plus
Dmoj\GI17806-PA 265 GI17806-PA 72..159 242..326 155 31.9 Plus
Dmoj\GI19459-PA 373 GI19459-PA 37..196 165..333 151 25.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18545-PA 418 GL18545-PA 1..418 1..420 1798 78.4 Plus
Dper\GL11511-PA 338 GL11511-PA 124..193 261..330 151 40 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14418-PA 418 GA14418-PA 1..418 1..420 1795 78.4 Plus
Dpse\GA24755-PA 338 GA24755-PA 124..193 261..330 151 40 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18389-PA 420 GM18389-PA 1..420 1..420 2178 96.4 Plus
Dsec\GM11347-PA 276 GM11347-PA 79..168 248..326 153 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23201-PA 420 GD23201-PA 1..420 1..420 2188 96.9 Plus
Dsim\GD22217-PA 276 GD22217-PA 79..168 248..326 153 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16926-PA 423 GJ16926-PA 1..423 4..420 1388 64.9 Plus
Dvir\GJ17630-PA 277 GJ17630-PA 78..169 242..326 163 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15178-PA 412 GK15178-PA 8..410 23..419 1550 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18204-PA 420 GE18204-PA 1..420 1..420 2184 96.9 Plus
Dyak\GE13229-PA 276 GE13229-PA 79..168 248..326 153 33.3 Plus

LD11027.hyp Sequence

Translation from 100 to 1362

> LD11027.hyp
MFLMTAGTSNFLSAAWRSEAEESKSKENGSLCCCEYVAEDSRERSHILGC
CCNCVDFDLVCTRLVTCRAIDRRNIDGMLIAFQDRLRLPWRGGAKRISPA
AVAPAFIVPLMLGLATLNSKTAIVLMLTLVGFTIWGMELAKRTATRTNFF
LSWLVFSVFYMIIIFEFQVPLLELAPEENYALMFFSCAALYCLYSAKALS
PLNLVSAQYGTTPKDELPGIAEASSGEEQAEAQTTLQMESVLSLDDDEVG
DMDTAERSGLMHGQPNICEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLN
CCIGERNYVWYIVGLALSEIALLLGANLTLTSICHPFMVVRPLGYPVLLP
DDCSEVFEGFDLGISFVVACYALLISSYIAFILARQAYLWWKGSTLHEYK
RTSNAAGRNRIWSNWRAILK*

LD11027.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
GABPI-PA 420 CG17257-PA 1..420 1..420 2230 100 Plus
GABPI-PB 420 CG17257-PB 1..420 1..420 2230 100 Plus
GABPI-PD 343 CG17257-PD 1..343 78..420 1809 100 Plus
GABPI-PC 343 CG17257-PC 1..343 78..420 1809 100 Plus
Dnz1-PA 276 CG6627-PA 103..168 267..326 159 40.9 Plus