Clone LD11031 Report

Search the DGRC for LD11031

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:110
Well:31
Vector:pBS SK-
Associated Gene/TranscriptCG3589-RA
Protein status:LD11031.pep: gold
Preliminary Size:1822
Sequenced Size:1744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3589 2001-01-01 Release 2 assignment
CG3589 2001-10-10 Blastp of sequenced clone
CG3589 2003-01-01 Sim4 clustering to Release 3
CG3589 2008-04-29 Release 5.5 accounting
CG3589 2008-08-15 Release 5.9 accounting
CG3589 2008-12-18 5.12 accounting

Clone Sequence Records

LD11031.complete Sequence

1744 bp (1744 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061127

> LD11031.complete
CAGTTTTCCATGACAAGGGGCTATTCATAATCAAATCTAGAGATAATGCT
GCTGAAGATACGCCACGCCCTGTTGGAGGTCACCAGTCCACCGGCTGCAA
AACAGTCCGCGATCATTATTAACAACGAACTCATCATCAGTTCTGGAAGC
ATTCTGCAACCACATTTGGCCGTAGACGGGGACAAAGGAGCGCAGAACAA
GGCAATTGTTGCCAGATTGCAGAGGGGTCAACTGCTGGATGTTCAGAATG
AGGAGCAGGAAGAGGATGCGCAGATCCGCTCACTACATTTTGTGGCCACC
TTCGATCCGCAGCAACGACGGCCGAGGCCAATCGCAGCACCTGGGTCGAG
GCAACCACACATCCTCTCCCGCTTCACTGCCCATCCGCTGTACGTGTTTT
GTGCGAACGAAGTTTGCCGCAACCTGCACCACATACTACTCACCGCTGAC
TCCGGCGATGCGGGTGAGGTGCTGCGCTCCAGTTTCGTGGTGCTGGGCCT
GCGGAAGCCCGAAAAGGAGAAGTCCTTCAAGCGCTTCCTCGCGCACATCG
CTAACTACTTGCGATACCTGCAGCCCATGCACACTTTGGACGACGTGCTG
GTCATGTGCTCGCCCTTTGGCCTGGAGAACTTTTACAAGACCATCAGCAT
TGGAAAGGTGTCTAATGTTATGGGACGAAGTGGCTGCTTGTTTGCCATTT
CAAACGCTTTGCCCCTGGGCTGTGAAGGCTCTGCAGTGTTCAACAACAAG
CTGCGGCTCGTTGGCATTGTGATATGCACCTCATTTCAACGCCATCACGA
AAACGTCAACCTCACTCTGGCCGCAAACTTTGGCTACCTTTTGCGCAACT
TTATGGAACAACTGGGCATGTCTACTACAGCATTCCAGCTGAGTCGAGAG
CCGTCGAGCTTTGCCTGGGAGCGCACCATTGTGGTCATAGAGTCGGCGGG
TCAACAAGGTACCGGGACCTTCATAAGAGTACACAACAAGCGCTTTATCC
TCACTTGTGCACATGTGGTGGGACAGAACATTGAGACTGTTAATTGCCGT
GCTGCCGATCGCGAGTTCCAGTCTGAGGTGATTTGGTGCAATCCGGACAG
CGATAAGCCCTTCGACTTGGCTCTACTCACAGCTCCGCAGGATGTGCCGG
AGCAATGCTGCGTGCGACTGGCCAGGAGTCCGGCCACCGTCGGGCAAATG
GTGTACAACGCCGGGTTTCCCTACTACGTTAACTTCAGCTTCAGGCACGA
CTTCAACCCTTCGATTTTTCAAGGGAGGGTCATCAAGTGCGACACCGGGG
CCATTATGTCCGATGGCAGCGTGCAGGCGGGCCAAAGTGGAGGACCGATG
TTCGACCAGAATGGATGCATCCTAGGCGTTTGTGTGTCCAACATTAAATT
AGACGACGTCGTCTACCCAAACATAAATACAGCCATTCCAATTTGTGATA
TCCGCAACACGTTGCAGCAGTTTGCACGCACCAACGACTTAAATGTGCTT
AGCAACCTGGTAGCCAGTCCAGATGTACACCGCGTGTGGTCTCTGGAAAT
GCCCCCCATTCGCAGCAAACTCTGAGGAGACTCGTGCATTGTTCATTGTT
AACGAAACTGTAATTAGTGTTTTTATATAATATGGCCGGTTAGCCAGGCT
TTTAAGATTAAACAAGATATTGTAAAAAAAGAAAATATATATATATATAT
AAATTTATTAATATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD11031.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3589-RA 1791 CG3589-RA 67..1789 1..1723 8600 99.9 Plus
CG3589.a 1747 CG3589.a 39..1524 1..1486 7430 100 Plus
CG3589.a 1747 CG3589.a 1524..1745 1502..1723 1095 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20669551..20670303 1..753 3750 99.9 Plus
chr2R 21145070 chr2R 20670739..20671201 1024..1486 2300 99.8 Plus
chr2R 21145070 chr2R 20671252..20671483 1486..1717 1160 100 Plus
chr2R 21145070 chr2R 20670358..20670522 753..917 825 100 Plus
chr2R 21145070 chr2R 20670575..20670684 917..1026 550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:57:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24783610..24784362 1..753 3765 100 Plus
2R 25286936 2R 24784798..24785260 1024..1486 2315 100 Plus
2R 25286936 2R 24785311..24785548 1486..1723 1175 99.6 Plus
2R 25286936 2R 24784417..24784581 753..917 825 100 Plus
2R 25286936 2R 24784634..24784743 917..1026 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24784809..24785561 1..753 3765 100 Plus
2R 25260384 2R 24785997..24786459 1024..1486 2315 100 Plus
2R 25260384 2R 24786510..24786747 1486..1723 1175 99.5 Plus
2R 25260384 2R 24785616..24785780 753..917 825 100 Plus
2R 25260384 2R 24785833..24785942 917..1026 550 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:11:54 has no hits.

LD11031.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:05 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20670575..20670684 917..1026 100 -> Plus
chr2R 20669551..20670302 1..752 99 -> Plus
chr2R 20670358..20670521 753..916 100 -> Plus
chr2R 20670742..20671201 1027..1486 99 -> Plus
chr2R 20671253..20671437 1487..1671 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:43 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 1..1530 46..1575 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:12 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 1..1530 46..1575 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:12 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 1..1530 46..1575 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:00 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 1..1530 46..1575 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:14 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 1..1530 46..1575 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:30:56 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 39..1755 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:12 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 39..1755 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:12 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 56..1772 1..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:30 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 39..1755 1..1717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:14 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
CG3589-RA 56..1772 1..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:05 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24784417..24784580 753..916 100 -> Plus
2R 24784634..24784743 917..1026 100 -> Plus
2R 24783610..24784361 1..752 100 -> Plus
2R 24784801..24785260 1027..1486 100 -> Plus
2R 24785312..24785542 1487..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:05 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24784417..24784580 753..916 100 -> Plus
2R 24784634..24784743 917..1026 100 -> Plus
2R 24783610..24784361 1..752 100 -> Plus
2R 24784801..24785260 1027..1486 100 -> Plus
2R 24785312..24785542 1487..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:05 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24784417..24784580 753..916 100 -> Plus
2R 24784634..24784743 917..1026 100 -> Plus
2R 24783610..24784361 1..752 100 -> Plus
2R 24784801..24785260 1027..1486 100 -> Plus
2R 24785312..24785542 1487..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:12 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20671133..20671884 1..752 100 -> Plus
arm_2R 20671940..20672103 753..916 100 -> Plus
arm_2R 20672157..20672266 917..1026 100 -> Plus
arm_2R 20672324..20672783 1027..1486 100 -> Plus
arm_2R 20672835..20673065 1487..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:49 Download gff for LD11031.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24784827..24785578 1..752 100 -> Plus
2R 24785634..24785797 753..916 100 -> Plus
2R 24785851..24785960 917..1026 100 -> Plus
2R 24786018..24786477 1027..1486 100 -> Plus
2R 24786529..24786759 1487..1717 100   Plus

LD11031.pep Sequence

Translation from 45 to 1574

> LD11031.pep
MLLKIRHALLEVTSPPAAKQSAIIINNELIISSGSILQPHLAVDGDKGAQ
NKAIVARLQRGQLLDVQNEEQEEDAQIRSLHFVATFDPQQRRPRPIAAPG
SRQPHILSRFTAHPLYVFCANEVCRNLHHILLTADSGDAGEVLRSSFVVL
GLRKPEKEKSFKRFLAHIANYLRYLQPMHTLDDVLVMCSPFGLENFYKTI
SIGKVSNVMGRSGCLFAISNALPLGCEGSAVFNNKLRLVGIVICTSFQRH
HENVNLTLAANFGYLLRNFMEQLGMSTTAFQLSREPSSFAWERTIVVIES
AGQQGTGTFIRVHNKRFILTCAHVVGQNIETVNCRAADREFQSEVIWCNP
DSDKPFDLALLTAPQDVPEQCCVRLARSPATVGQMVYNAGFPYYVNFSFR
HDFNPSIFQGRVIKCDTGAIMSDGSVQAGQSGGPMFDQNGCILGVCVSNI
KLDDVVYPNINTAIPICDIRNTLQQFARTNDLNVLSNLVASPDVHRVWSL
EMPPIRSKL*

LD11031.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13341-PA 512 GF13341-PA 1..512 1..509 2192 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23006-PA 509 GG23006-PA 1..509 1..509 2561 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20358-PA 505 GH20358-PA 1..505 1..509 1834 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3589-PA 509 CG3589-PA 1..509 1..509 2653 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20027-PA 507 GI20027-PA 1..507 1..509 1789 67 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16774-PA 510 GL16774-PA 1..510 1..509 2066 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17541-PA 510 GA17541-PA 1..510 1..509 2072 77.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11899-PA 509 GM11899-PA 1..509 1..509 2605 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11897-PA 509 GD11897-PA 1..509 1..509 2673 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21275-PA 508 GJ21275-PA 1..508 1..509 1905 71.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21671-PA 524 GK21671-PA 1..524 1..509 1879 69.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14443-PA 511 GE14443-PA 1..511 1..509 2590 94.1 Plus

LD11031.hyp Sequence

Translation from 45 to 1574

> LD11031.hyp
MLLKIRHALLEVTSPPAAKQSAIIINNELIISSGSILQPHLAVDGDKGAQ
NKAIVARLQRGQLLDVQNEEQEEDAQIRSLHFVATFDPQQRRPRPIAAPG
SRQPHILSRFTAHPLYVFCANEVCRNLHHILLTADSGDAGEVLRSSFVVL
GLRKPEKEKSFKRFLAHIANYLRYLQPMHTLDDVLVMCSPFGLENFYKTI
SIGKVSNVMGRSGCLFAISNALPLGCEGSAVFNNKLRLVGIVICTSFQRH
HENVNLTLAANFGYLLRNFMEQLGMSTTAFQLSREPSSFAWERTIVVIES
AGQQGTGTFIRVHNKRFILTCAHVVGQNIETVNCRAADREFQSEVIWCNP
DSDKPFDLALLTAPQDVPEQCCVRLARSPATVGQMVYNAGFPYYVNFSFR
HDFNPSIFQGRVIKCDTGAIMSDGSVQAGQSGGPMFDQNGCILGVCVSNI
KLDDVVYPNINTAIPICDIRNTLQQFARTNDLNVLSNLVASPDVHRVWSL
EMPPIRSKL*

LD11031.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3589-PA 509 CG3589-PA 1..509 1..509 2653 100 Plus