Clone LD11247 Report

Search the DGRC for LD11247

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:112
Well:47
Vector:pBS SK-
Associated Gene/TranscriptSk2-RA
Protein status:LD11247.pep: gold
Preliminary Size:2688
Sequenced Size:2624

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2159 2001-01-01 Release 2 assignment
CG32484 2001-11-09 Blastp of sequenced clone
CG32484 2003-01-01 Sim4 clustering to Release 3
Sk2 2008-04-29 Release 5.5 accounting
Sk2 2008-08-15 Release 5.9 accounting
Sk2 2008-12-18 5.12 accounting

Clone Sequence Records

LD11247.complete Sequence

2624 bp (2624 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069417

> LD11247.complete
CTGCCACCGACGGTAACACTGCGGCTATGATTGGATGATAAGCGATCCAT
AAAAGCCTGGACACAAAAGACCTGAAACATGCTGCTTGGCAGCCGAATCT
CCAGTCGAAATGAGCGAATCTCTTGATAAGACCACCAGCCCGAGCTCGGC
CAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAGGGCCACG
ACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAGCCACGTA
TTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGGAGTCGCC
GGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGACATTGTGG
GTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGATGTCGGGC
GCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCTCGGCGTC
CGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGCACCAATA
GTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTTTCTCTAC
GTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGTTGCACCG
GGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACCTTCGAGG
ACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTGGCAGTTG
CATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATGAGCGACG
CCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGTGACGCTC
GTGAGGTCTTCAACATGCACGTGACGCCGGTGCTCAACGAGGCCGAGGTG
CCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCGAGTTCTT
GAGCACCAGGTGCCTGGACGCCTGGTGCTGCGTGGTGGCTGTCGGCGGAG
ACGGTCTCTTCCACGAGATAGTCAATGGACTGCTGCAGCGCCAGGACTGG
GCCCACGTCCTGCCTCATCTGGCACTGGGAATCATTCCTTGCGGCTCCGG
AAATGGATTGGCCCGCTCCATTGCCCATTGTTACAACGAACCATACTTCA
GCAAGCCAGTGCTAGGAGCTGCTCTGACCGTAATCAGTGGACGCAGTTCA
CCCATGGACGTGGTCCGGGTGCAGCTGCAGAGTCGCTCCCTCTACTCCTT
CCTGTCCATCGGCTGGGGTCTGATCTCGGACGTGGACATCGAGAGCGAGC
GCATTCGCATGTTGGGCTACCAGCGCTTCACCGTGTGGACCCTCTACCGT
CTGGTGAATCTGCGCACCTACAACGGCCGAATCAGCTATCTTCTGACGGA
CCATGAGGTGTCCTCAACCCATAGCGCTACCGGTTATGCTGCCCAGCGGA
GAATGCAGAGCAGCCGTAGCTGCAACACGCACATCGACATGCTAAATGGG
CCGGCGCCCATCTATCATTCCAGTGCCGAGTACCTGCCACAGGAGTTTGC
GGACGTGATCTCCCTGGAGACGTCCATCAATCAGTCGTTCCGCTCGAGGT
GCGACAGCTGGTTGTCGGGGGGATCGCGGCGCAGCTTTTACTATTCCATA
TCGGAGAGCATCTACCACAGTCTGGCGGATGAGAGCGAGTTCGCCGGCCT
GGCGGCCGCCTCGCTGGAAAACCGGCAGCAGAACTACGGTCCGGCAAGCG
AGCTGCCGGATCTGAACGAACCGCTGTCCGAGGATCAGGGTTGGCTGGTG
GAGGAGGGCGAGTTCGTCATGATGCACGCCGTTTACCAGACCCATCTGGG
CATCGACTGTCATTTTGCGCCCAAGGCCCAGCTGAACGACGGCACCATCT
ACCTGATCCTCATACGCGCCGGCATCAGCCGCCCGCACCTGCTGAGCTTC
CTCTACAACATGAGCTCCGGCACTCACCTGCCGGAGTCGCACGACGACCA
TGTGAAGGTGCTGCCAGTGCGAGCATTCCGCCTGGAGCCCTACGACAATC
ACGGCATCATCACGGTCGACGGCGAGCGCGTCGAGTTCGGGCCCCTCCAA
GCTGAGGTCCTGCCGGGCATAGCCCGCGTCATGGTGCCCAAGTAGGAGGA
GCTTACTGAAGACCATCAAGCAATAGAAATCTCAATTTTGGAATCTCTGC
ATTTGTAGCTAATACTTAGGGTCCCAGGTGGCCGATATGAGAGAGTTGTG
CATTCTACATATTTCGTGTTTTTGTGGCCTGCTTCTGCCAACCAATCATG
TATTGTTAACATTTTAAACACAATAACAGCTATTTCCGAAATATCTAACA
TGTTTGTTTATAAAACGTGTGCCATATGAAGTGCACGTGAATTTATTTTT
ATCTCGGCTGTTCAAAATAGCGATGAAAGTCTTATTTATTTTGTTCTTTT
TTTTTTTAAACTGTGTAACGAAATGAGATATATATTCAAAATGTTTAAAG
ATGAATACAAATAAATCTTCATGAATTCAAAAATCTTAGAAAGTAACAGT
GTAAGTAACAGAGCTAAATCATTTACAATTCCATATTTTAAAGTAGGAAG
TTAAGAATATAACATCTTTGAGCTTGAAATAAAAAATAAAAATGTTAACT
AAAAAAAAAAAAAAAAAAAAAAAA

LD11247.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sk2-RA 2749 Sk2-RA 148..2749 1..2602 13010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3048026..3049539 1087..2600 7405 99.3 Plus
chr3L 24539361 chr3L 3046456..3047541 1..1086 5355 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3048646..3050161 1087..2602 7580 100 Plus
3L 28110227 3L 3047081..3048166 1..1086 5430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3048646..3050161 1087..2602 7580 100 Plus
3L 28103327 3L 3047081..3048166 1..1086 5430 100 Plus
Blast to na_te.dros performed 2019-03-16 11:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1360..1427 2425..2359 121 66.2 Minus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5200..5298 2492..2404 120 66 Minus

LD11247.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3046456..3047541 1..1086 99 -> Plus
chr3L 3048026..3049539 1087..2600 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:44:59 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..1986 110..2095 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:12 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..1986 110..2095 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:19 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..1986 110..2095 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:49 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..1986 110..2095 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..1986 110..2095 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:20 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 126..2725 1..2600 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:12 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 126..2725 1..2600 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:19 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..2594 7..2600 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:49 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 126..2725 1..2600 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
Sk2-RA 1..2594 7..2600 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3047081..3048166 1..1086 100 -> Plus
3L 3048646..3050159 1087..2600 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3047081..3048166 1..1086 100 -> Plus
3L 3048646..3050159 1087..2600 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:38 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3047081..3048166 1..1086 100 -> Plus
3L 3048646..3050159 1087..2600 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:19 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3047081..3048166 1..1086 100 -> Plus
arm_3L 3048646..3050159 1087..2600 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:54 Download gff for LD11247.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3047081..3048166 1..1086 100 -> Plus
3L 3048646..3050159 1087..2600 100   Plus

LD11247.pep Sequence

Translation from 109 to 2094

> LD11247.pep
MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV
RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA
CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA
YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT
LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD
LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV
LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD
VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN
LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP
IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES
IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG
EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN
MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV
LPGIARVMVPK*

LD11247.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24262-PA 659 GF24262-PA 1..659 1..661 3044 86.3 Plus
Dana\GF22547-PA 644 GF22547-PA 46..640 31..659 1214 42.1 Plus
Dana\GF17718-PA 690 GF17718-PA 201..403 213..411 199 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14899-PA 661 GG14899-PA 1..661 1..661 3438 96.7 Plus
Dere\GG18417-PA 649 GG18417-PA 38..645 31..659 1235 41.9 Plus
Dere\GG11053-PA 687 GG11053-PA 113..556 96..586 223 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14568-PA 655 GH14568-PA 1..655 1..661 2515 72.5 Plus
Dgri\GH12403-PA 700 GH12403-PA 63..696 36..659 1206 39.5 Plus
Dgri\GH22641-PA 646 GH22641-PA 172..367 220..411 167 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sk2-PA 661 CG32484-PA 1..661 1..661 3463 100 Plus
Sk1-PA 641 CG1747-PA 18..636 7..658 1195 41.1 Plus
Sk1-PB 641 CG1747-PB 18..636 7..658 1195 41.1 Plus
Cerk-PB 687 CG16708-PB 24..596 12..628 218 23.8 Plus
Cerk-PA 687 CG16708-PA 24..596 12..628 218 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13895-PA 647 GI13895-PA 1..647 5..661 2472 71.5 Plus
Dmoj\GI15718-PA 678 GI15718-PA 16..674 2..659 1269 41.3 Plus
Dmoj\GI10206-PA 693 GI10206-PA 174..394 194..411 206 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20779-PA 644 GL20779-PA 1..644 1..661 2728 77.1 Plus
Dper\GL14861-PA 318 GL14861-PA 111..313 453..658 491 48.1 Plus
Dper\GL22186-PA 692 GL22186-PA 184..562 188..586 233 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16938-PA 658 GA16938-PA 1..658 1..661 2822 79.4 Plus
Dpse\GA14519-PA 673 GA14519-PA 14..669 1..659 1248 41.6 Plus
Dpse\GA14094-PA 690 GA14094-PA 182..560 188..586 237 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14525-PA 637 GM14525-PA 1..637 1..661 3330 94.7 Plus
Dsec\GM13080-PA 656 GM13080-PA 38..652 31..659 1213 40.8 Plus
Dsec\GM10643-PA 687 GM10643-PA 169..596 173..628 220 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13722-PA 661 GD13722-PA 1..661 1..661 3515 98.9 Plus
Dsim\GD17022-PA 653 GD17022-PA 38..649 31..659 1219 41 Plus
Dsim\GD19624-PA 687 GD19624-PA 169..596 173..628 225 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11750-PA 648 GJ11750-PA 1..648 5..661 2572 74.4 Plus
Dvir\GJ15246-PA 687 GJ15246-PA 54..683 36..659 1234 41.5 Plus
Dvir\GJ10046-PA 692 GJ10046-PA 184..392 207..411 204 28.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12320-PA 695 GK12320-PA 41..695 18..661 2677 77.6 Plus
Dwil\GK16232-PA 694 GK16232-PA 31..690 15..659 1280 41.3 Plus
Dwil\GK14278-PA 669 GK14278-PA 141..376 194..408 207 29.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20353-PA 661 GE20353-PA 1..661 1..661 3431 96.4 Plus
Dyak\GE15936-PA 641 GE15936-PA 26..637 23..659 1219 41.3 Plus
Dyak\GE25291-PA 680 GE25291-PA 200..549 213..586 225 27 Plus

LD11247.hyp Sequence

Translation from 109 to 2094

> LD11247.hyp
MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV
RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA
CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA
YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT
LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD
LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV
LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD
VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN
LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP
IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES
IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG
EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN
MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV
LPGIARVMVPK*

LD11247.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sk2-PA 661 CG32484-PA 1..661 1..661 3463 100 Plus
Sk1-PA 641 CG1747-PA 18..636 7..658 1195 41.1 Plus
Sk1-PB 641 CG1747-PB 18..636 7..658 1195 41.1 Plus
Cerk-PB 687 CG16708-PB 24..596 12..628 218 23.8 Plus
Cerk-PA 687 CG16708-PA 24..596 12..628 218 23.8 Plus