BDGP Sequence Production Resources |
Search the DGRC for LD11247
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 112 |
Well: | 47 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sk2-RA |
Protein status: | LD11247.pep: gold |
Preliminary Size: | 2688 |
Sequenced Size: | 2624 |
Gene | Date | Evidence |
---|---|---|
CG2159 | 2001-01-01 | Release 2 assignment |
CG32484 | 2001-11-09 | Blastp of sequenced clone |
CG32484 | 2003-01-01 | Sim4 clustering to Release 3 |
Sk2 | 2008-04-29 | Release 5.5 accounting |
Sk2 | 2008-08-15 | Release 5.9 accounting |
Sk2 | 2008-12-18 | 5.12 accounting |
2624 bp (2624 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069417
> LD11247.complete CTGCCACCGACGGTAACACTGCGGCTATGATTGGATGATAAGCGATCCAT AAAAGCCTGGACACAAAAGACCTGAAACATGCTGCTTGGCAGCCGAATCT CCAGTCGAAATGAGCGAATCTCTTGATAAGACCACCAGCCCGAGCTCGGC CAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAGGGCCACG ACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAGCCACGTA TTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGGAGTCGCC GGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGACATTGTGG GTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGATGTCGGGC GCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCTCGGCGTC CGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGCACCAATA GTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTTTCTCTAC GTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGTTGCACCG GGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACCTTCGAGG ACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTGGCAGTTG CATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATGAGCGACG CCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGTGACGCTC GTGAGGTCTTCAACATGCACGTGACGCCGGTGCTCAACGAGGCCGAGGTG CCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCGAGTTCTT GAGCACCAGGTGCCTGGACGCCTGGTGCTGCGTGGTGGCTGTCGGCGGAG ACGGTCTCTTCCACGAGATAGTCAATGGACTGCTGCAGCGCCAGGACTGG GCCCACGTCCTGCCTCATCTGGCACTGGGAATCATTCCTTGCGGCTCCGG AAATGGATTGGCCCGCTCCATTGCCCATTGTTACAACGAACCATACTTCA GCAAGCCAGTGCTAGGAGCTGCTCTGACCGTAATCAGTGGACGCAGTTCA CCCATGGACGTGGTCCGGGTGCAGCTGCAGAGTCGCTCCCTCTACTCCTT CCTGTCCATCGGCTGGGGTCTGATCTCGGACGTGGACATCGAGAGCGAGC GCATTCGCATGTTGGGCTACCAGCGCTTCACCGTGTGGACCCTCTACCGT CTGGTGAATCTGCGCACCTACAACGGCCGAATCAGCTATCTTCTGACGGA CCATGAGGTGTCCTCAACCCATAGCGCTACCGGTTATGCTGCCCAGCGGA GAATGCAGAGCAGCCGTAGCTGCAACACGCACATCGACATGCTAAATGGG CCGGCGCCCATCTATCATTCCAGTGCCGAGTACCTGCCACAGGAGTTTGC GGACGTGATCTCCCTGGAGACGTCCATCAATCAGTCGTTCCGCTCGAGGT GCGACAGCTGGTTGTCGGGGGGATCGCGGCGCAGCTTTTACTATTCCATA TCGGAGAGCATCTACCACAGTCTGGCGGATGAGAGCGAGTTCGCCGGCCT GGCGGCCGCCTCGCTGGAAAACCGGCAGCAGAACTACGGTCCGGCAAGCG AGCTGCCGGATCTGAACGAACCGCTGTCCGAGGATCAGGGTTGGCTGGTG GAGGAGGGCGAGTTCGTCATGATGCACGCCGTTTACCAGACCCATCTGGG CATCGACTGTCATTTTGCGCCCAAGGCCCAGCTGAACGACGGCACCATCT ACCTGATCCTCATACGCGCCGGCATCAGCCGCCCGCACCTGCTGAGCTTC CTCTACAACATGAGCTCCGGCACTCACCTGCCGGAGTCGCACGACGACCA TGTGAAGGTGCTGCCAGTGCGAGCATTCCGCCTGGAGCCCTACGACAATC ACGGCATCATCACGGTCGACGGCGAGCGCGTCGAGTTCGGGCCCCTCCAA GCTGAGGTCCTGCCGGGCATAGCCCGCGTCATGGTGCCCAAGTAGGAGGA GCTTACTGAAGACCATCAAGCAATAGAAATCTCAATTTTGGAATCTCTGC ATTTGTAGCTAATACTTAGGGTCCCAGGTGGCCGATATGAGAGAGTTGTG CATTCTACATATTTCGTGTTTTTGTGGCCTGCTTCTGCCAACCAATCATG TATTGTTAACATTTTAAACACAATAACAGCTATTTCCGAAATATCTAACA TGTTTGTTTATAAAACGTGTGCCATATGAAGTGCACGTGAATTTATTTTT ATCTCGGCTGTTCAAAATAGCGATGAAAGTCTTATTTATTTTGTTCTTTT TTTTTTTAAACTGTGTAACGAAATGAGATATATATTCAAAATGTTTAAAG ATGAATACAAATAAATCTTCATGAATTCAAAAATCTTAGAAAGTAACAGT GTAAGTAACAGAGCTAAATCATTTACAATTCCATATTTTAAAGTAGGAAG TTAAGAATATAACATCTTTGAGCTTGAAATAAAAAATAAAAATGTTAACT AAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sk2-RA | 2749 | Sk2-RA | 148..2749 | 1..2602 | 13010 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1360..1427 | 2425..2359 | 121 | 66.2 | Minus |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 5200..5298 | 2492..2404 | 120 | 66 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3046456..3047541 | 1..1086 | 99 | -> | Plus |
chr3L | 3048026..3049539 | 1087..2600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..1986 | 110..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..1986 | 110..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..1986 | 110..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..1986 | 110..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..1986 | 110..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 126..2725 | 1..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 126..2725 | 1..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..2594 | 7..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 126..2725 | 1..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk2-RA | 1..2594 | 7..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3047081..3048166 | 1..1086 | 100 | -> | Plus |
3L | 3048646..3050159 | 1087..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3047081..3048166 | 1..1086 | 100 | -> | Plus |
3L | 3048646..3050159 | 1087..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3047081..3048166 | 1..1086 | 100 | -> | Plus |
3L | 3048646..3050159 | 1087..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3047081..3048166 | 1..1086 | 100 | -> | Plus |
arm_3L | 3048646..3050159 | 1087..2600 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3047081..3048166 | 1..1086 | 100 | -> | Plus |
3L | 3048646..3050159 | 1087..2600 | 100 | Plus |
Translation from 109 to 2094
> LD11247.pep MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV LPGIARVMVPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24262-PA | 659 | GF24262-PA | 1..659 | 1..661 | 3044 | 86.3 | Plus |
Dana\GF22547-PA | 644 | GF22547-PA | 46..640 | 31..659 | 1214 | 42.1 | Plus |
Dana\GF17718-PA | 690 | GF17718-PA | 201..403 | 213..411 | 199 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14899-PA | 661 | GG14899-PA | 1..661 | 1..661 | 3438 | 96.7 | Plus |
Dere\GG18417-PA | 649 | GG18417-PA | 38..645 | 31..659 | 1235 | 41.9 | Plus |
Dere\GG11053-PA | 687 | GG11053-PA | 113..556 | 96..586 | 223 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14568-PA | 655 | GH14568-PA | 1..655 | 1..661 | 2515 | 72.5 | Plus |
Dgri\GH12403-PA | 700 | GH12403-PA | 63..696 | 36..659 | 1206 | 39.5 | Plus |
Dgri\GH22641-PA | 646 | GH22641-PA | 172..367 | 220..411 | 167 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sk2-PA | 661 | CG32484-PA | 1..661 | 1..661 | 3463 | 100 | Plus |
Sk1-PA | 641 | CG1747-PA | 18..636 | 7..658 | 1195 | 41.1 | Plus |
Sk1-PB | 641 | CG1747-PB | 18..636 | 7..658 | 1195 | 41.1 | Plus |
Cerk-PB | 687 | CG16708-PB | 24..596 | 12..628 | 218 | 23.8 | Plus |
Cerk-PA | 687 | CG16708-PA | 24..596 | 12..628 | 218 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13895-PA | 647 | GI13895-PA | 1..647 | 5..661 | 2472 | 71.5 | Plus |
Dmoj\GI15718-PA | 678 | GI15718-PA | 16..674 | 2..659 | 1269 | 41.3 | Plus |
Dmoj\GI10206-PA | 693 | GI10206-PA | 174..394 | 194..411 | 206 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20779-PA | 644 | GL20779-PA | 1..644 | 1..661 | 2728 | 77.1 | Plus |
Dper\GL14861-PA | 318 | GL14861-PA | 111..313 | 453..658 | 491 | 48.1 | Plus |
Dper\GL22186-PA | 692 | GL22186-PA | 184..562 | 188..586 | 233 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16938-PA | 658 | GA16938-PA | 1..658 | 1..661 | 2822 | 79.4 | Plus |
Dpse\GA14519-PA | 673 | GA14519-PA | 14..669 | 1..659 | 1248 | 41.6 | Plus |
Dpse\GA14094-PA | 690 | GA14094-PA | 182..560 | 188..586 | 237 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14525-PA | 637 | GM14525-PA | 1..637 | 1..661 | 3330 | 94.7 | Plus |
Dsec\GM13080-PA | 656 | GM13080-PA | 38..652 | 31..659 | 1213 | 40.8 | Plus |
Dsec\GM10643-PA | 687 | GM10643-PA | 169..596 | 173..628 | 220 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13722-PA | 661 | GD13722-PA | 1..661 | 1..661 | 3515 | 98.9 | Plus |
Dsim\GD17022-PA | 653 | GD17022-PA | 38..649 | 31..659 | 1219 | 41 | Plus |
Dsim\GD19624-PA | 687 | GD19624-PA | 169..596 | 173..628 | 225 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11750-PA | 648 | GJ11750-PA | 1..648 | 5..661 | 2572 | 74.4 | Plus |
Dvir\GJ15246-PA | 687 | GJ15246-PA | 54..683 | 36..659 | 1234 | 41.5 | Plus |
Dvir\GJ10046-PA | 692 | GJ10046-PA | 184..392 | 207..411 | 204 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12320-PA | 695 | GK12320-PA | 41..695 | 18..661 | 2677 | 77.6 | Plus |
Dwil\GK16232-PA | 694 | GK16232-PA | 31..690 | 15..659 | 1280 | 41.3 | Plus |
Dwil\GK14278-PA | 669 | GK14278-PA | 141..376 | 194..408 | 207 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20353-PA | 661 | GE20353-PA | 1..661 | 1..661 | 3431 | 96.4 | Plus |
Dyak\GE15936-PA | 641 | GE15936-PA | 26..637 | 23..659 | 1219 | 41.3 | Plus |
Dyak\GE25291-PA | 680 | GE25291-PA | 200..549 | 213..586 | 225 | 27 | Plus |
Translation from 109 to 2094
> LD11247.hyp MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV LPGIARVMVPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sk2-PA | 661 | CG32484-PA | 1..661 | 1..661 | 3463 | 100 | Plus |
Sk1-PA | 641 | CG1747-PA | 18..636 | 7..658 | 1195 | 41.1 | Plus |
Sk1-PB | 641 | CG1747-PB | 18..636 | 7..658 | 1195 | 41.1 | Plus |
Cerk-PB | 687 | CG16708-PB | 24..596 | 12..628 | 218 | 23.8 | Plus |
Cerk-PA | 687 | CG16708-PA | 24..596 | 12..628 | 218 | 23.8 | Plus |