Clone LD11447 Report

Search the DGRC for LD11447

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:114
Well:47
Vector:pBS SK-
Associated Gene/TranscriptPlc21C-RC
Protein status:LD11447.pep: gold
Preliminary Size:4591
Sequenced Size:5464

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4574 2001-07-04 Blastp of sequenced clone
CG4574 2003-01-01 Sim4 clustering to Release 3
Plc21C 2008-04-29 Release 5.5 accounting
Plc21C 2008-08-15 Release 5.9 accounting
Plc21C 2008-12-18 5.12 accounting

Clone Sequence Records

LD11447.complete Sequence

5464 bp (5464 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051657

> LD11447.complete
CATTTTTTACTCGTCGTCGCGTTTTTTGGGCTTTCGGGTGTATTTTTTTG
TTTTGAATTGTTGACACATCTCCGGGACGTTTCATCGTTTTGGATTGTAA
TTAGGCGTGCAAGTGGAAAAGATAATAAATCAAAGCCAATGTGCAGCGTG
AGAGTAACGAAAAAAAAAACAAAACAATCGCAGCGTGAGACTTTGCTTTT
TGTTGTCTTTGCTAAGTGATGCTGCAGCAACAATAGTAACCAAAGCATCA
AGAACATCAATAAGAGCTCCCGCAAAAATTCGCCGAACCTAAACTTATTG
CAAAACAACAAGAATTGTCGTAATACGGTTGTTTTTTCTGCATTATTACT
TCATAACAGAGTGTCGCTCTCTCGCTCGCTCCGGAAAAGCTCCGCTTTTG
GGGTTCTCTCTCGCTCAGAAAACAGCCAGAACTTTTAATCAGTCCCAGAA
TGCAGTCCAAAGAGCTCGCATGCGGTGCAAAGTCAATACCGCTCTAACTG
TGCCAGGACCATGTCGATGATTCGGATACCAACCAGGACTATGGCGTCAT
TTGTATGCGGTGTGGCTATTCTGCGACAACTAAGGGAAAGGAAATGAGGA
GCCGCGGCTAATCCAAGAATCGCACAGAAAGTAAACAGAAAGCGTTCATC
AGTGGGTCAGTAGCAGCCCGTAAACGAGATTTTAAACCCAAAAATTTGTG
AGGATGATGAGCGCCGGAGGAACCTACATCTCCACCGCCAGCGTGGAGGT
GCCACAAGCTCTGCAAGATGGCGAGAAGTTCATTCGATGGGATGATGACT
CGGGCACTGGAACACCGGTTACAATGCGCGTCGATGCCAAGGGCTTCTTC
CTCTACTGGGTCGACCAGAACAACGAGCTGGATATCCTTGATATAGCCAC
CATACGCGACGTTCGCACAGGACAGTACGCTAAGCGACCAAAGGACAACA
AGCTGCGCCAGATTGTGACGCTGGGCCCCCAGGACACGCTCGAGGAGAAG
ACAGTGACGGTATGCCACGGCTCGGACTTCGTCAACATGACGTTCGTCAA
CTTCTGCTGCACCCGGCGGGACATAGCCCAGCTCTGGACCGACGGACTCA
TCAAGTTGGCCTACAGCTTGGCCCAGCTCAATGGCTCGGCGATTATGTTC
CTGCAGAAGGCCCATACCAAACTGTGTCTCCAGGTGGACAAAAGCGGCCG
CATACCAGTGAAAAACATCATAAAACTTTTTGCCCAAAACAAGGAGGATC
GCAAACGTGTCGAGAAGGCGCTGGACGTGACCGGTTTGCCGTCGGGAAAG
GTCGATAGCATATCGGTGTCCAAATTTCAATTCGAGGACTTTTACAATTT
GTACAAATATCTCACGCAGCGTTCGGAGGTGGAACGCCTCTTTGACAGCA
TCGTTGGCAACTCGAAGCGCAAGTGCATGTCCATCGCTCAACTGGTGGAG
TTCCTGAACAAGACACAGCGTGATCCCCGCCTGAACGAGATCCTCTACCC
TTATGCGAATCCCGCCCGCGCCAAGGAGCTCATCCAGCAATATGAGCCCA
ACAAGTTCAATGCGCAAAAGGGCCAACTCAGCCTGGATGGCTTTTTGAGG
TACTTAATGGGCGACGACAATCCCATCATGGCGCCCAGCAAGCTCGATCT
CTGCGATGACATGGACCAGCCGATGTCGCACTACTTCATCAACTCCTCGC
ATAACACCTACTTGACGGGACACCAGCTGACCGGCAAGTCGTCCGTCGAG
ATTTACAGGCAGTGTCTCCTGGCGGGATGCAGATGCGTTGAGCTCGACTT
CTGGAACGGACGCACCGAGGAGCCAGTCATTGTCCACGGCTATACGTTCG
TGCCCGAGATATTTGCCAAGGACGTGCTGGAGGCCATCGCAGAGAGTGCA
TTTAAAACATCCGAATACCCTGTGATATTGAGCTTTGAGAATCACTGCAA
CCCTAGGCAACAGGCGAAAATTGCCAACTATTGTCGCGAAATATTTGGCG
ATATGCTGCTCGATAAGCCTCTGGACTCTCATCCGCTGGAGCCGAACATG
GACTTGCCACCGCCGGCGATGCTGCGCCGCAAGATTATAATCAAGAACAA
GAAGAAGCATCACCACCACCATCACCATCATCACCACAAAAAGCCAGCGC
AGGTGGGCACGCCGGCAGCCAACAACAAACTGACTACAGCGAATTCAGTG
GATGCCAAGGCGGCGCAACAAGTCGGTTTGTCGGCCTCGCATGAGGATGG
GGGCGTGACCAGGAGCACCGCCAACGGTGACGTTGCCACTGGAACAGGAA
CCGGAAGTGCTGCTGGGACAGCAGGACACGCGCCGCCGTTGCAACAAATC
CGCCAAAGCTCCAAAGACAGCACTGGATCCTCCGATTCGGACAGCTCTTC
GGAGGATGAATCCCTGCCTAACACCACGCCCAATTTGCCCAGCGGCAACG
AACCTCCGCCAGAAAAGGCTCAAAAGGAAACGGAGGCGGGAGCAGAGATT
TCAGCTTTGGTCAACTATGTTCAGCCCATCCATTTTAGCTCTTTTGAGAA
TGCGGAAAAAAAGAATCGATGCTACGAAATGTCTTCGTTTGATGAAAAAC
AGGCGACAACATTATTGAAGGAGCGACCGATTGAATTTGTGAACTACAAC
AAACACCAATTATCTCGTGTCTATCCGGCGGGCACTCGCTTTGATAGCTC
CAACTTTATGCCGCAGTTGTTCTGGAATGCCGGATGTCAGCTCGTGGCAC
TTAACTTCCAAACCCTCGATCTGGCCATGCAACTCAACTTGGGGATCTTT
GAGTATAACGCTCGGTCCGGTTATCTACTTAAGCCGGAGTTTATGCGCCG
ATCAGATCGCAGATTGGATCCCTTCGCGGAAAGCACTGTGGATGGCATCA
TAGCAGGCACAGTATCAATCACGGTTCTATCTGGTCAGTTTCTCACGGAT
AAGAGGGCGAACACTTTTGTGGAAGTTGATATGTACGGTTTGCCAGCGGA
CACGGTGAGAAAGAAGTTTCGCACCAAGACAGTGCGGGATAATGGAATGA
ATCCCCTTTATGACGAGGAGCCGTTCGTGTTTAAGAAGGTGGTTCTCCCC
GAGTTGGCGAGCATTCGAATTGCAGCATATGAAGAGGGTGGCAAACTCAT
TGGTCACCGCGTTTTGCCCGTAATCGGTCTTTGCCCTGGTTACCGACATG
TGAATCTCCGATCTGAAGTGGGTCAACCAATAGCCCTTGCCTCTCTTTTC
CTGTGCGTGGTGGTCAAGGATTATGTACCCGATGATCTTTCCAATTTCGC
AGAGGCGCTAGCTAACCCTATTAAATACCAAAGTGAGCTAGAGAAGCGCG
ATATTCAACTATCTGTTTTGACCGACGAAGCCGAAGCGCTGGGCAGTGCG
GACGAGGATCTCTCCAAGTCGTTCGTTTTCGTCCAAGTAGGTGGCCAAAA
AAAGGAGCTGCGTCCGGTTGAATCGCTTGCGACTTCGCCGAAGCATAGGC
CGAGCATCTCGGCCGCCGCAGCAATGAGTGTTGACGTTACCGTGGATCGG
ACCGATGGCGGAAGGGGAGAAGATAGCATCTCTATTGTAGCACCCTCAAT
ACAGCATCAGCACTCTCTAGACCAGTCCGTAAGCACCTCCATCCGACAGG
TGGAGTCCTCGCAGTTTGATGTCGATCTTGTGTTGGCGGAGCCGCTGGAA
AAGATATTGGATCACAAGTCCGTCAAGGAAAAGCGTCTCGAGATGGAAAA
GAAGCTGGAGTCACTGCGAAAGAAGCATGACAAGGAAAAGATTAAGATCG
CCGGCCAGAAATCCAGTCCGCTAGAGGGCAAGAAGCCGAAGTTTGCCATC
ACGAATAAGCTGGTGAAGCGGCTAAGCAACAAGAGTCTCGAGCCTGGTGT
AGAGATCCCCGCCTGCCCTCTGGATCTGGGCGATAGCAGCGAGGAGAGTG
CAGCCGCGGATGCCGGTGAGGACTTAGCCGGTGGGAGCAGCAGTCTGGAT
GGCAGAACTCAAGAGTCGCGATTACGCAGTGCCTGCCGGGAGTACACTTC
CCAGTACCGTGAGCTGCAGGAGAAGTACCATGAGGCAATTTACAGTGCAG
CCGAGAAGGTGCTGAAGACATCGCAAACTGGGCAAACAAAGCAGTTAAAA
GCATCTCTGGACAAGGTCACTGGAGAGGTTATGCACCAGCTGCAGGAGGC
CCGCCGCAACGAGGTTAAGAATCTGGCCACCGTGCACCGGGATCGTGATG
AGCTGATCAGAATGAAACGCGAGGTGGCAAGCTCCGTTGTGGAACGTGGC
GTAGCTGAACGTGTGCGGCTGAAGCAGACCTTTGACCGGAGAACGGATGA
ACTTCAGAAGCAGCACGACTCAGTGCGCAATGCCCTGGCAGAGCACCGCT
CCAAGGCTCGTCAAATTCTCGACAAGGAGGCAGAATCGCGAAGCTGTGTA
TCCAGCAATGGCTTCTTGGTCCTCTTCCATGGACCTCATCACCATGGCTG
TACGGGCTCCGGCTCGTCAGCCCTTTCAGGCAATAATCTCACTCTAAATC
TGGACGCGGGGGCTGCCGGTAGTCATTCAGCCATTTCGCCGGCAAAGTCG
CACAACAGCATCGCAGCAGCGGCCGAGATGAAGACGTAAATGGGCCACGC
CCGTATAGGTTTTTCTCCCCGCCCAAATTATCCCTAGGATTAATTGTGGT
TCTAAAGTTGTTAGTCTTCAGTATTTACAGCAGAAACATAGGAATGAAAA
GTCTTCGTAGTATATAAGCAGTGGAGGAGTAGTCCCTATCCTCCCACACC
TATTTGACGGGAACTGACCTCGATTAGATCTTAGGACCTTTGACCCTAGG
CATTGTAAATCCCACTGCTAAGGGGAATCCAAGCAAACACGTTTTCTAAC
TGAACAAACTAGATGTAAATCTATCGCATGTATGATGTACTTGTAGTGTA
ACTGTTGACGTATCCGTACTTTACAGTACTTTATCTGTATACTGAACGGT
GTATTTCTATGGTGTTAATGGAGGTTGATCCATCACACTCCCGTCAAACC
GTACGGTTTCTTCCTATTCGAACTTCGCTGAAACTCTGAGTGTCTAATTA
AGCAAGCAAATGTAACAGAAGCAGAAAATAAGTATAATTTATTTGTCTAT
ACGAAGGAGACTGAGTGCTCCATTTGTCTAATGCTAATTGTGGTTGTGTG
TATTTTACATCAGTTTTAATCGATATAATTTATACAATTAGTTTAAGCCT
CTCACACAAACTGTGGATTGAATCTCGTGCGCACACAAGGCGGATGCTAG
AGCGGATGCCAAAGCACAAGTCTAGGCCAACAATTAGTCATTTATTTCTC
GGTTGGTTGCTATTTATTCTTGATTTAGTCACTATTCTTACGTTTACCTA
GTCGTTACAAAGCTCCAATAAAATTCTATACGGATTGTTTTTCCCCAAAA
AAAAAAAAAAAAAA

LD11447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Plc21C.c 6828 Plc21C.c 71..5517 1..5447 27235 100 Plus
Plc21C.f 7263 Plc21C.f 71..5517 1..5447 27235 100 Plus
Plc21C-RC 5870 Plc21C-RC 71..5517 1..5447 27235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 345232..346274 4404..5446 5185 99.8 Plus
chr2L 23010047 chr2L 342885..343748 2559..3422 4320 100 Plus
chr2L 23010047 chr2L 344043..344508 3423..3888 2330 100 Plus
chr2L 23010047 chr2L 306011..306428 1..418 2090 100 Plus
chr2L 23010047 chr2L 317775..318156 416..797 1910 100 Plus
chr2L 23010047 chr2L 344595..344966 3889..4260 1860 100 Plus
chr2L 23010047 chr2L 339225..339465 1958..2198 1175 99.2 Plus
chr2L 23010047 chr2L 342598..342811 2345..2558 1070 100 Plus
chr2L 23010047 chr2L 336368..336567 1402..1601 985 99.5 Plus
chr2L 23010047 chr2L 337952..338138 1778..1964 935 100 Plus
chr2L 23010047 chr2L 337033..337217 1598..1782 925 100 Plus
chr2L 23010047 chr2L 336037..336222 1216..1401 915 99.5 Plus
chr2L 23010047 chr2L 345025..345173 4258..4406 745 100 Plus
chr2L 23010047 chr2L 325685..325832 797..944 740 100 Plus
chr2L 23010047 chr2L 340726..340876 2194..2344 740 99.3 Plus
chr2L 23010047 chr2L 334126..334265 942..1081 700 100 Plus
chr2L 23010047 chr2L 335437..335573 1079..1215 685 100 Plus
chrX 22417052 chrX 4252270..4252423 2698..2851 200 75.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 345213..346256 4404..5447 5220 100 Plus
2L 23513712 2L 342866..343729 2559..3422 4320 100 Plus
2L 23513712 2L 344024..344489 3423..3888 2330 100 Plus
2L 23513712 2L 305972..306389 1..418 2090 100 Plus
2L 23513712 2L 317740..318121 416..797 1910 100 Plus
2L 23513712 2L 344576..344947 3889..4260 1860 100 Plus
2L 23513712 2L 339201..339441 1958..2198 1205 100 Plus
2L 23513712 2L 342579..342792 2345..2558 1070 100 Plus
2L 23513712 2L 336349..336548 1402..1601 1000 100 Plus
2L 23513712 2L 337933..338119 1778..1964 935 100 Plus
2L 23513712 2L 336018..336203 1216..1401 930 100 Plus
2L 23513712 2L 337014..337198 1598..1782 925 100 Plus
2L 23513712 2L 340705..340855 2194..2344 755 100 Plus
2L 23513712 2L 345006..345154 4258..4406 745 100 Plus
2L 23513712 2L 325678..325825 797..944 740 100 Plus
2L 23513712 2L 334118..334257 942..1081 700 100 Plus
2L 23513712 2L 335412..335548 1079..1215 685 100 Plus
X 23542271 X 4359206..4359359 2698..2851 200 75.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 345213..346256 4404..5447 5220 100 Plus
2L 23513712 2L 342866..343729 2559..3422 4320 100 Plus
2L 23513712 2L 344024..344489 3423..3888 2330 100 Plus
2L 23513712 2L 305972..306389 1..418 2090 100 Plus
2L 23513712 2L 317740..318121 416..797 1910 100 Plus
2L 23513712 2L 344576..344947 3889..4260 1860 100 Plus
2L 23513712 2L 339201..339441 1958..2198 1205 100 Plus
2L 23513712 2L 342579..342792 2345..2558 1070 100 Plus
2L 23513712 2L 336349..336548 1402..1601 1000 100 Plus
2L 23513712 2L 337933..338119 1778..1964 935 100 Plus
2L 23513712 2L 336018..336203 1216..1401 930 100 Plus
2L 23513712 2L 337014..337198 1598..1782 925 100 Plus
2L 23513712 2L 340705..340855 2194..2344 755 100 Plus
2L 23513712 2L 345006..345154 4258..4406 745 100 Plus
2L 23513712 2L 325678..325825 797..944 740 100 Plus
2L 23513712 2L 334118..334257 942..1081 700 100 Plus
2L 23513712 2L 335412..335548 1079..1215 685 100 Plus
X 23527363 X 4367304..4367457 2698..2851 200 75.3 Plus
Blast to na_te.dros performed on 2019-03-15 22:16:55 has no hits.

LD11447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:41 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 345028..345172 4261..4405 100 -> Plus
chr2L 337957..338137 1783..1963 100 -> Plus
chr2L 306011..306428 1..418 100 -> Plus
chr2L 317778..318155 419..796 100 -> Plus
chr2L 325685..325831 797..943 100 -> Plus
chr2L 334128..334265 944..1081 100 -> Plus
chr2L 335440..335573 1082..1215 100 -> Plus
chr2L 336037..336222 1216..1401 99 -> Plus
chr2L 336368..336565 1402..1599 99 -> Plus
chr2L 337035..337217 1600..1782 100 -> Plus
chr2L 339231..339465 1964..2198 86 -> Plus
chr2L 340731..340876 2199..2344 99 -> Plus
chr2L 342598..342811 2345..2558 100 -> Plus
chr2L 342885..343748 2559..3422 100 -> Plus
chr2L 344043..344508 3423..3888 100 -> Plus
chr2L 344595..344966 3889..4260 100 -> Plus
chr2L 345234..346274 4406..5446 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:54:08 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 1..3936 704..4639 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:53 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 1..3936 704..4639 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:14:08 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 1..3936 704..4639 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:20:17 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 1..3936 704..4639 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:07 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 1..3936 704..4639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:07 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 32..5477 1..5446 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:53 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 32..5477 1..5446 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:14:08 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 38..5483 1..5446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:20:17 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 32..5477 1..5446 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:07 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
Plc21C-RC 38..5483 1..5446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:41 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 325678..325824 797..943 100 -> Plus
2L 334120..334257 944..1081 100 -> Plus
2L 335415..335548 1082..1215 100 -> Plus
2L 337016..337198 1600..1782 100 -> Plus
2L 337938..338118 1783..1963 100 -> Plus
2L 305972..306389 1..418 100 -> Plus
2L 317743..318120 419..796 100 -> Plus
2L 336018..336203 1216..1401 100 -> Plus
2L 336349..336546 1402..1599 100 -> Plus
2L 339207..339441 1964..2198 100 -> Plus
2L 340710..340855 2199..2344 100 -> Plus
2L 342579..342792 2345..2558 100 -> Plus
2L 342866..343729 2559..3422 100 -> Plus
2L 344024..344489 3423..3888 100 -> Plus
2L 344576..344947 3889..4260 100 -> Plus
2L 345009..345153 4261..4405 100 -> Plus
2L 345215..346255 4406..5446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:41 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 325678..325824 797..943 100 -> Plus
2L 334120..334257 944..1081 100 -> Plus
2L 335415..335548 1082..1215 100 -> Plus
2L 337016..337198 1600..1782 100 -> Plus
2L 337938..338118 1783..1963 100 -> Plus
2L 305972..306389 1..418 100 -> Plus
2L 317743..318120 419..796 100 -> Plus
2L 336018..336203 1216..1401 100 -> Plus
2L 336349..336546 1402..1599 100 -> Plus
2L 339207..339441 1964..2198 100 -> Plus
2L 340710..340855 2199..2344 100 -> Plus
2L 342579..342792 2345..2558 100 -> Plus
2L 342866..343729 2559..3422 100 -> Plus
2L 344024..344489 3423..3888 100 -> Plus
2L 344576..344947 3889..4260 100 -> Plus
2L 345009..345153 4261..4405 100 -> Plus
2L 345215..346255 4406..5446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:41 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 325678..325824 797..943 100 -> Plus
2L 334120..334257 944..1081 100 -> Plus
2L 335415..335548 1082..1215 100 -> Plus
2L 337016..337198 1600..1782 100 -> Plus
2L 337938..338118 1783..1963 100 -> Plus
2L 305972..306389 1..418 100 -> Plus
2L 317743..318120 419..796 100 -> Plus
2L 336018..336203 1216..1401 100 -> Plus
2L 336349..336546 1402..1599 100 -> Plus
2L 339207..339441 1964..2198 100 -> Plus
2L 340710..340855 2199..2344 100 -> Plus
2L 342579..342792 2345..2558 100 -> Plus
2L 342866..343729 2559..3422 100 -> Plus
2L 344024..344489 3423..3888 100 -> Plus
2L 344576..344947 3889..4260 100 -> Plus
2L 345009..345153 4261..4405 100 -> Plus
2L 345215..346255 4406..5446 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:14:08 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 342579..342792 2345..2558 100 -> Plus
arm_2L 305972..306389 1..418 100 -> Plus
arm_2L 317743..318120 419..796 100 -> Plus
arm_2L 325678..325824 797..943 100 -> Plus
arm_2L 334120..334257 944..1081 100 -> Plus
arm_2L 335415..335548 1082..1215 100 -> Plus
arm_2L 336018..336203 1216..1401 100 -> Plus
arm_2L 336349..336546 1402..1599 100 -> Plus
arm_2L 337016..337198 1600..1782 100 -> Plus
arm_2L 337938..338118 1783..1963 100 -> Plus
arm_2L 339207..339441 1964..2198 100 -> Plus
arm_2L 340710..340855 2199..2344 100 -> Plus
arm_2L 342866..343729 2559..3422 100 -> Plus
arm_2L 344024..344489 3423..3888 100 -> Plus
arm_2L 344576..344947 3889..4260 100 -> Plus
arm_2L 345009..345153 4261..4405 100 -> Plus
arm_2L 345215..346255 4406..5446 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:55:16 Download gff for LD11447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 337938..338118 1783..1963 100 -> Plus
2L 325678..325824 797..943 100 -> Plus
2L 334120..334257 944..1081 100 -> Plus
2L 335415..335548 1082..1215 100 -> Plus
2L 339207..339441 1964..2198 100 -> Plus
2L 340710..340855 2199..2344 100 -> Plus
2L 342579..342792 2345..2558 100 -> Plus
2L 305972..306389 1..418 100 -> Plus
2L 317743..318120 419..796 100 -> Plus
2L 336018..336203 1216..1401 100 -> Plus
2L 336349..336546 1402..1599 100 -> Plus
2L 337016..337198 1600..1782 100 -> Plus
2L 342866..343729 2559..3422 100 -> Plus
2L 344024..344489 3423..3888 100 -> Plus
2L 344576..344947 3889..4260 100 -> Plus
2L 345009..345153 4261..4405 100 -> Plus
2L 345215..346255 4406..5446 100   Plus

LD11447.pep Sequence

Translation from 703 to 4638

> LD11447.pep
MMSAGGTYISTASVEVPQALQDGEKFIRWDDDSGTGTPVTMRVDAKGFFL
YWVDQNNELDILDIATIRDVRTGQYAKRPKDNKLRQIVTLGPQDTLEEKT
VTVCHGSDFVNMTFVNFCCTRRDIAQLWTDGLIKLAYSLAQLNGSAIMFL
QKAHTKLCLQVDKSGRIPVKNIIKLFAQNKEDRKRVEKALDVTGLPSGKV
DSISVSKFQFEDFYNLYKYLTQRSEVERLFDSIVGNSKRKCMSIAQLVEF
LNKTQRDPRLNEILYPYANPARAKELIQQYEPNKFNAQKGQLSLDGFLRY
LMGDDNPIMAPSKLDLCDDMDQPMSHYFINSSHNTYLTGHQLTGKSSVEI
YRQCLLAGCRCVELDFWNGRTEEPVIVHGYTFVPEIFAKDVLEAIAESAF
KTSEYPVILSFENHCNPRQQAKIANYCREIFGDMLLDKPLDSHPLEPNMD
LPPPAMLRRKIIIKNKKKHHHHHHHHHHKKPAQVGTPAANNKLTTANSVD
AKAAQQVGLSASHEDGGVTRSTANGDVATGTGTGSAAGTAGHAPPLQQIR
QSSKDSTGSSDSDSSSEDESLPNTTPNLPSGNEPPPEKAQKETEAGAEIS
ALVNYVQPIHFSSFENAEKKNRCYEMSSFDEKQATTLLKERPIEFVNYNK
HQLSRVYPAGTRFDSSNFMPQLFWNAGCQLVALNFQTLDLAMQLNLGIFE
YNARSGYLLKPEFMRRSDRRLDPFAESTVDGIIAGTVSITVLSGQFLTDK
RANTFVEVDMYGLPADTVRKKFRTKTVRDNGMNPLYDEEPFVFKKVVLPE
LASIRIAAYEEGGKLIGHRVLPVIGLCPGYRHVNLRSEVGQPIALASLFL
CVVVKDYVPDDLSNFAEALANPIKYQSELEKRDIQLSVLTDEAEALGSAD
EDLSKSFVFVQVGGQKKELRPVESLATSPKHRPSISAAAAMSVDVTVDRT
DGGRGEDSISIVAPSIQHQHSLDQSVSTSIRQVESSQFDVDLVLAEPLEK
ILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKKPKFAIT
NKLVKRLSNKSLEPGVEIPACPLDLGDSSEESAAADAGEDLAGGSSSLDG
RTQESRLRSACREYTSQYRELQEKYHEAIYSAAEKVLKTSQTGQTKQLKA
SLDKVTGEVMHQLQEARRNEVKNLATVHRDRDELIRMKREVASSVVERGV
AERVRLKQTFDRRTDELQKQHDSVRNALAEHRSKARQILDKEAESRSCVS
SNGFLVLFHGPHHHGCTGSGSSALSGNNLTLNLDAGAAGSHSAISPAKSH
NSIAAAAEMKT*

LD11447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20639-PA 1315 GF20639-PA 1..1315 1..1311 6211 92 Plus
Dana\GF19456-PA 1095 GF19456-PA 11..470 14..467 960 43.5 Plus
Dana\GF19456-PA 1095 GF19456-PA 550..850 599..899 942 54.5 Plus
Dana\GF19146-PA 1234 GF19146-PA 213..468 208..467 418 39 Plus
Dana\GF19146-PA 1234 GF19146-PA 967..1212 588..838 314 35.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24713-PA 1318 GG24713-PA 1..1318 1..1311 6970 97.8 Plus
Dere\GG18703-PA 953 GG18703-PA 405..711 593..899 945 53.4 Plus
Dere\GG18703-PA 953 GG18703-PA 11..420 14..417 785 38.9 Plus
Dere\GG17956-PA 1236 GG17956-PA 256..469 246..467 420 41.8 Plus
Dere\GG17956-PA 1236 GG17956-PA 969..1214 588..838 323 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10584-PA 1315 GH10584-PA 1..1315 1..1311 5636 84.6 Plus
Dgri\GH24286-PA 1094 GH24286-PA 11..470 14..467 960 42.9 Plus
Dgri\GH24286-PA 1094 GH24286-PA 549..849 599..899 950 54.8 Plus
Dgri\GH12692-PA 1232 GH12692-PA 210..461 208..467 431 37.6 Plus
Dgri\GH12692-PA 1232 GH12692-PA 965..1210 588..838 317 33.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Plc21C-PC 1311 CG4574-PC 1..1311 1..1311 6747 100 Plus
Plc21C-PD 1318 CG4574-PD 1..1318 1..1311 6729 99.5 Plus
Plc21C-PH 1306 CG4574-PH 1..1306 1..1311 6703 99.5 Plus
Plc21C-PB 1312 CG4574-PB 1..1312 1..1311 6675 98.9 Plus
Plc21C-PA 1312 CG4574-PA 1..1312 1..1311 6675 98.9 Plus
Plc21C-PG 1250 CG4574-PG 1..1250 1..1311 5642 87 Plus
norpA-PC 1095 CG3620-PC 11..927 14..959 1876 40.7 Plus
norpA-PD 1095 CG3620-PD 11..927 14..959 1876 40.7 Plus
norpA-PF 1095 CG3620-PF 11..927 14..959 1876 40.7 Plus
norpA-PE 1095 CG3620-PE 11..927 14..959 1843 40.4 Plus
norpA-PB 1095 CG3620-PB 11..927 14..959 1843 40.4 Plus
norpA-PA 1095 CG3620-PA 11..927 14..959 1843 40.4 Plus
sl-PA 1236 CG4200-PA 214..469 209..467 419 39.4 Plus
sl-PA 1236 CG4200-PA 969..1230 588..854 331 34.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23110-PA 1328 GI23110-PA 1..1328 1..1311 5888 88 Plus
Dmoj\GI16411-PA 1094 GI16411-PA 11..470 14..467 972 43.9 Plus
Dmoj\GI16411-PA 1094 GI16411-PA 549..849 599..899 951 54.8 Plus
Dmoj\GI14457-PA 1231 GI14457-PA 210..461 208..467 428 38.1 Plus
Dmoj\GI14457-PA 1231 GI14457-PA 964..1209 588..838 332 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18869-PA 839 GL18869-PA 1..821 1..855 3751 87.8 Plus
Dper\GL14297-PA 924 GL14297-PA 550..820 599..869 923 58.7 Plus
Dper\GL14297-PA 924 GL14297-PA 11..446 14..443 918 41.6 Plus
Dper\GL15831-PA 642 GL15831-PA 257..471 245..467 428 42.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18269-PA 1290 GA18269-PA 1..1290 1..1311 5913 90 Plus
Dpse\GA17564-PA 1095 GA17564-PA 550..850 599..899 959 55.1 Plus
Dpse\GA17564-PA 1095 GA17564-PA 11..446 14..443 923 41.6 Plus
Dpse\small-wing-PA 1250 GA18024-PA 213..471 208..467 421 39 Plus
Dpse\small-wing-PA 1250 GA18024-PA 983..1228 588..838 323 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16735-PA 756 GM16735-PA 1..755 1..755 4127 99.3 Plus
Dsec\GM12340-PA 1095 GM12340-PA 11..470 14..467 997 44 Plus
Dsec\GM12340-PA 1095 GM12340-PA 550..850 599..899 943 54.2 Plus
Dsec\GM13428-PA 807 GM13428-PA 540..785 588..838 331 36.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23017-PA 1318 GD23017-PA 1..1318 1..1311 7013 98.6 Plus
Dsim\GD17281-PA 292 GD17281-PA 17..143 337..467 319 48.9 Plus
Dsim\GD24832-PA 458 GD24832-PA 219..429 588..811 239 34.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23620-PA 1313 GJ23620-PA 1..1313 1..1311 5820 87.3 Plus
Dvir\GJ17032-PA 1094 GJ17032-PA 549..849 599..899 959 55.1 Plus
Dvir\GJ17032-PA 1094 GJ17032-PA 11..470 14..467 959 43.3 Plus
Dvir\small-wing-PA 1231 GJ18791-PA 210..461 208..467 430 38.7 Plus
Dvir\small-wing-PA 1231 GJ18791-PA 964..1209 588..838 325 34.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23786-PA 1324 GK23786-PA 1..1324 1..1311 6013 89.6 Plus
Dwil\GK15712-PA 1095 GK15712-PA 11..470 14..467 959 43.3 Plus
Dwil\GK15712-PA 1095 GK15712-PA 550..850 599..899 949 54.8 Plus
Dwil\GK25059-PA 1281 GK25059-PA 319..496 286..467 420 46.2 Plus
Dwil\GK25059-PA 1281 GK25059-PA 1013..1258 588..838 322 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Plc21C-PA 1313 GE16747-PA 1..1313 1..1311 6960 98 Plus
Dyak\GE16341-PA 1095 GE16341-PA 11..446 14..443 968 43 Plus
Dyak\GE16341-PA 1095 GE16341-PA 550..850 599..899 943 54.2 Plus
Dyak\GE17264-PA 1233 GE17264-PA 214..469 209..467 424 39 Plus
Dyak\GE17264-PA 1233 GE17264-PA 966..1211 588..838 328 35.4 Plus

LD11447.hyp Sequence

Translation from 703 to 4638

> LD11447.hyp
MMSAGGTYISTASVEVPQALQDGEKFIRWDDDSGTGTPVTMRVDAKGFFL
YWVDQNNELDILDIATIRDVRTGQYAKRPKDNKLRQIVTLGPQDTLEEKT
VTVCHGSDFVNMTFVNFCCTRRDIAQLWTDGLIKLAYSLAQLNGSAIMFL
QKAHTKLCLQVDKSGRIPVKNIIKLFAQNKEDRKRVEKALDVTGLPSGKV
DSISVSKFQFEDFYNLYKYLTQRSEVERLFDSIVGNSKRKCMSIAQLVEF
LNKTQRDPRLNEILYPYANPARAKELIQQYEPNKFNAQKGQLSLDGFLRY
LMGDDNPIMAPSKLDLCDDMDQPMSHYFINSSHNTYLTGHQLTGKSSVEI
YRQCLLAGCRCVELDFWNGRTEEPVIVHGYTFVPEIFAKDVLEAIAESAF
KTSEYPVILSFENHCNPRQQAKIANYCREIFGDMLLDKPLDSHPLEPNMD
LPPPAMLRRKIIIKNKKKHHHHHHHHHHKKPAQVGTPAANNKLTTANSVD
AKAAQQVGLSASHEDGGVTRSTANGDVATGTGTGSAAGTAGHAPPLQQIR
QSSKDSTGSSDSDSSSEDESLPNTTPNLPSGNEPPPEKAQKETEAGAEIS
ALVNYVQPIHFSSFENAEKKNRCYEMSSFDEKQATTLLKERPIEFVNYNK
HQLSRVYPAGTRFDSSNFMPQLFWNAGCQLVALNFQTLDLAMQLNLGIFE
YNARSGYLLKPEFMRRSDRRLDPFAESTVDGIIAGTVSITVLSGQFLTDK
RANTFVEVDMYGLPADTVRKKFRTKTVRDNGMNPLYDEEPFVFKKVVLPE
LASIRIAAYEEGGKLIGHRVLPVIGLCPGYRHVNLRSEVGQPIALASLFL
CVVVKDYVPDDLSNFAEALANPIKYQSELEKRDIQLSVLTDEAEALGSAD
EDLSKSFVFVQVGGQKKELRPVESLATSPKHRPSISAAAAMSVDVTVDRT
DGGRGEDSISIVAPSIQHQHSLDQSVSTSIRQVESSQFDVDLVLAEPLEK
ILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKKPKFAIT
NKLVKRLSNKSLEPGVEIPACPLDLGDSSEESAAADAGEDLAGGSSSLDG
RTQESRLRSACREYTSQYRELQEKYHEAIYSAAEKVLKTSQTGQTKQLKA
SLDKVTGEVMHQLQEARRNEVKNLATVHRDRDELIRMKREVASSVVERGV
AERVRLKQTFDRRTDELQKQHDSVRNALAEHRSKARQILDKEAESRSCVS
SNGFLVLFHGPHHHGCTGSGSSALSGNNLTLNLDAGAAGSHSAISPAKSH
NSIAAAAEMKT*

LD11447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Plc21C-PC 1311 CG4574-PC 1..1311 1..1311 6747 100 Plus
Plc21C-PD 1318 CG4574-PD 1..1318 1..1311 6729 99.5 Plus
Plc21C-PH 1306 CG4574-PH 1..1306 1..1311 6703 99.5 Plus
Plc21C-PB 1312 CG4574-PB 1..1312 1..1311 6675 98.9 Plus
Plc21C-PA 1312 CG4574-PA 1..1312 1..1311 6675 98.9 Plus