Clone LD11455 Report

Search the DGRC for LD11455

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:114
Well:55
Vector:pBS SK-
Associated Gene/TranscriptCG7137-RA
Protein status:LD11455.pep: gold
Preliminary Size:1439
Sequenced Size:1254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7137 2001-01-01 Release 2 assignment
CG7137 2001-10-10 Blastp of sequenced clone
CG7137 2003-01-01 Sim4 clustering to Release 3
CG7137 2008-04-29 Release 5.5 accounting
CG7137 2008-08-15 Release 5.9 accounting
CG7137 2008-12-18 5.12 accounting

Clone Sequence Records

LD11455.complete Sequence

1254 bp (1254 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061131

> LD11455.complete
ATTTGTTTACAATTTTCCACCGCAAAATGAAGCCTTTCGAAGTGCCGCCC
TGGGAGGAAGGAGCCGATATCATTGAGTTTGAGCCGGTAAATCCTTCAGG
AAATGGAGTTGCCGCCAAGAAGAAACCAAAGAAGAAGAAACCCAAAAAGA
AGAAGGCCGCTGTGCCAAATGAAAATCTGAATGTGAACAAGGCAGCTGAA
AAATTCACTTACCGGCAGGGCAGAGGACCTCTTGCCCCGCCCCAAGACTC
CTCGGATGATGACTACGAAGATGTGGAGGATGGCATCCGGGCCATGCACA
AGGTGAAGTCCGGAAGAATAGAGAAACAGCGACCACCAACGCAGGCCACA
AAAGGTGGCAAAAAAGAACTGAAACTGAAACCCGAACTGGCCCAGGCGGC
TTTGGAGGCCATGGAGGCCACCAGCTCAACCACGCCGGCTGCAAACTCGT
TGGCCAGTAAGCTGCAATCGGAACTCCTGGGCGGACGTTTCCGATACATC
AACGAGCAGCTCTACTCGACGACCAGTCGCAAGGCGGAGGCACTTTTCCG
CAAGGATAGCTCCGCCTTCGAGGCCTATCACGCTGGCTACCGCCAGCAGG
TGGAGAAGTGGCCCATCAATCCGCTTAATCGCATCATCAAGACCATCAAG
AAGATTCCCAAAACAGCCATAATTGGCGACTTTGGTTGCGGCGAGGGCAA
ATTGGCACAATCCGTGCCCAACAAGGTGTACTCCATGGACTTGGTCGCTG
CTCGTAGCGACATCATTGCCTGCAACATCACGGATACTCCACTCCAAGCT
CGAACTCTGGACGTGGCCGTATACTGCCTCTCACTAATGGGCACGGATCT
GAACGAGTTCTTCCTGGAGGCCAATCGAGTGCTCAAGCTGCACGGCACTG
TCTATATCGCGGAGATTCAGTCGCGATTCCAGGATGTGCGGGAGTTTGTG
CGTTGCCTCAATGCATGTGGATTCGATCTTAACAAGAAGGATGTGGCTGT
TAACTATTTCTACTTCTTCCAATTCAAGAAGATGCGTCATGTGCCCAAGA
ACACCAAGATGAAAGCTTTCTCTCTCAAACCTTGCTTATATCGCAAGCGA
TAGGATGTTATCCTATTCAGATTAGTAGATTTCCGACTTTGCGAACTGTT
AAAGAAACCAAGACAGCGAATGCAATTATAGATAGTTACATTAATTTTAT
GTAGGAGAAACCGCAATAAATTTGGAATTCTTACAAAAAAAAAAAAAAAA
AAAA

LD11455.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7137-RA 1284 CG7137-RA 51..1284 1..1234 6170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15114569..15115802 1..1234 6110 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19227380..19228616 1..1237 6185 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19228579..19229815 1..1237 6185 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:11:52 has no hits.

LD11455.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:36 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15114569..15115802 1..1234 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:12 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 1..1077 27..1103 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:32 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 1..1077 27..1103 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:25 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 1..1077 27..1103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:33 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 1..1077 27..1103 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:11 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 1..1077 27..1103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:15 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 51..1284 1..1234 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:32 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 51..1284 1..1234 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:25 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 37..1270 1..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:33 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 51..1284 1..1234 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:11 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
CG7137-RA 37..1270 1..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:36 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19227380..19228613 1..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:36 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19227380..19228613 1..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:36 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19227380..19228613 1..1234 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:25 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15114885..15116118 1..1234 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:39 Download gff for LD11455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19228579..19229812 1..1234 100   Plus

LD11455.hyp Sequence

Translation from 2 to 1102

> LD11455.hyp
LFTIFHRKMKPFEVPPWEEGADIIEFEPVNPSGNGVAAKKKPKKKKPKKK
KAAVPNENLNVNKAAEKFTYRQGRGPLAPPQDSSDDDYEDVEDGIRAMHK
VKSGRIEKQRPPTQATKGGKKELKLKPELAQAALEAMEATSSTTPAANSL
ASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQV
EKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAA
RSDIIACNITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTV
YIAEIQSRFQDVREFVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKN
TKMKAFSLKPCLYRKR*

LD11455.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7137-PA 358 CG7137-PA 1..358 9..366 1859 100 Plus

LD11455.pep Sequence

Translation from 26 to 1102

> LD11455.pep
MKPFEVPPWEEGADIIEFEPVNPSGNGVAAKKKPKKKKPKKKKAAVPNEN
LNVNKAAEKFTYRQGRGPLAPPQDSSDDDYEDVEDGIRAMHKVKSGRIEK
QRPPTQATKGGKKELKLKPELAQAALEAMEATSSTTPAANSLASKLQSEL
LGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQVEKWPINPL
NRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN
ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYIAEIQSR
FQDVREFVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKNTKMKAFSL
KPCLYRKR*

LD11455.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11578-PA 360 GF11578-PA 1..360 1..358 1435 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21952-PA 359 GG21952-PA 1..359 1..358 1528 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23091-PA 346 GH23091-PA 3..346 4..358 1093 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7137-PA 358 CG7137-PA 1..358 1..358 1859 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18917-PA 357 GI18917-PA 3..357 4..358 1256 68.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17637-PA 354 GL17637-PA 2..354 3..358 1349 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20128-PA 354 GA20128-PA 2..354 3..358 1354 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21938-PA 356 GM21938-PA 1..356 1..358 1574 88.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11435-PA 356 GD11435-PA 1..356 1..358 1546 87.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19772-PA 356 GJ19772-PA 3..356 4..358 1154 68.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20668-PA 361 GK20668-PA 1..361 1..358 1268 70.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12025-PA 360 GE12025-PA 1..360 1..358 1560 88.6 Plus