Clone LD11626 Report

Search the DGRC for LD11626

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:116
Well:26
Vector:pBS SK-
Associated Gene/TranscriptOrc1-RA
Protein status:LD11626.pep: gold
Preliminary Size:2968
Sequenced Size:3155

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10667 2001-01-01 Release 2 assignment
CG10667 2002-03-19 Blastp of sequenced clone
CG10667 2003-01-01 Sim4 clustering to Release 3
Orc1 2008-04-29 Release 5.5 accounting
Orc1 2008-08-15 Release 5.9 accounting
Orc1 2008-12-18 5.12 accounting

Clone Sequence Records

LD11626.complete Sequence

3155 bp (3155 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094780

> LD11626.complete
ACAGCGCGGCAAGCTGATCGCAAAAGCAAGGGAGTCAATCTAGTGAAGAC
CCAATTGAATTATTGCTGACGTTGGCGACTTGTTAAGCGACTGATAGGGA
ATCGCAGCGCGATGGTTAATAAAGAGAACGCCCGCAGTGTGGGCCAGCAG
GTGAAGTGGATCGGAAGCCAAGACGAACTGCCGCCGGTGAAGAATCTGGA
GCACAAGAACGTCTACTTCTACCAGAAGTGCATCTACGGTCCGCTGACTT
TGTCCGTTGGCGACTTTATACTGGTGTCGAACGCGGATGCCGCCGAGCCG
GACACAGTGAGTGGATGCGACGTGGCCCGGATCCTGCACATGTACGAGCT
GCGCGAGCTGACCGATCGCGAGCCCTGCCGCGCCATCGTCCAGTGGTACT
CCTGGCCGAAAGCCATTCCGCACAACAAATACGACGACGACGAGGTGGCC
ATAGACTTTAGCCTGGAGGTGATCGAGGAGCATCGCCCGTACGACAACGA
CGTGGCCCTCGGTGCCATCTATCGCAAGTGCATCGTGCTGGAGGGTACCT
CAAAAACGTCAGCGGAGGAGATTCTCAAACGACACGCCAACAAACTGAAG
TCCACGGCCTGCCCCATGTTTGTCAGCCGGTACAGGTTTGTCAAGGTGAA
GCGGAGCTATCGCTTGATTCCCTTGGAAATTCACTTGGAGCAGCCGGAGG
ACAATGCCAGGCCAACCCGCTCATCTCGCAAATCCCTAACTGCACACAGA
GAATCCAAGCGATCAATATCCGCCCGCCACGATGACACAGCTGGCAACAA
GGGATCCTCAGTGGAAAAACGACGACGTGCGTCCATGGCAGCCTCGAGTT
CCGTGGAGTTCATCGATGTCAACAGCTTCATCTGCGAGAATAAAGTGTCG
CCAATTAAGATCGTGGGCGGACGCAGTGTCGTCCGGTTGTCTGAGAAGAA
AAATGCTCCGGAGATCAATGCCAACTATCTGCCGGCTTCGCCTCTCACTG
AGAAGAACGCCAAGGTGGAGACACCGAAATCCCGGGCCTCGGCAGCCCGC
CGCAACCTAAATCTCAGCCTGGATCGCGGAGCCGACACCACAGCCGACTC
AGACTGCCTGAACTACTCCATTGTTCAGCAGACTCCCGATCCTAAAACGC
CTTCCAACGACATGAAGATCAAGCTGCGCCTTTCGGAGAGAAGGCGTTCG
GTGCGCCTCGCATCCATGGACGTGGATCCCTTGTCGTTAGAGGAGGCCGT
ACAAGAACCCAATGCCCAGGGACGCAAGCGATTGGGCGTGGCCAATGGCG
ATATCTACCATACGCCCACCAAGAAATCCAAAGAGCCTCTGGAATCAGCT
GCAGCTACCGAGCAAACGCCCTCGACGAGGCGTAAAAGCATCCTGAAATC
AGCAACTAGTCGATTGGCCGAGGGCACGCCCAGGCGCAGTATTCACCTCT
CGAACATTGTGGAGCAGCGCGTGTTTGAGGATGATGAAATAATATCCACT
CCGAAAAGGGGGCGCTCGAAGAAAACAGTTCAAGACAATGACGAGGACTA
TTCGCCAAAGAAATCGGTCCAAAAGACGCCAACACGAACGCGTCGGTCAA
GCACCACCACCAAAACAGCGACGACACCCAGCAAAGGGATCACAACCGCA
ACTGCAACCCCGATGACGCCCTCCCAAAAGATGAAGAAGATACGAGCCGG
TGAACTTAGTCCCAGCATGCAACAGCGCACTGACCTTCCGGCCAAGGATT
CCAGCAAATCCGAACTGCAGCTAGCACGCGAACAGCTTCATGTGTCTGTT
GTGCCAAAGAGTTTGCCGTGCCGAGAACGGGAATTCGAGAACATTTACGC
CTTTCTGGAGGGCAAGATCCAGGATCAGTGCGGCGGCTGCATGTATGTGT
CCGGAGTTCCGGGCACTGGCAAAACAGCCACTGTCACTGGCGTCATACGC
ACCCTGCAGAGGATGGCTAAACAGAATGAGCTGCCTGCCTTTGAGTATCT
GGAGATTAATGGCATGCGACTGACTGAGCCGCGTCAGGCCTACGTCCAGA
TCTACAAACAGCTCACGGGCAAGACTGTGTCCTGGGAGCAGGCACACGCT
CTGCTAGAGAAACGGTTCACTACTCCGGCGCCGCGTAGAGTTACCACTGT
GCTGCTGGTTGATGAGCTGGATATCTTGTGCAACCGGCGCCAAGATGTGG
TCTACAATTTGCTCGACTGGCCCACCAAGTCGGCGGCCAAGCTGGTAGTG
GTCACCATTGCCAACACCATGGACTTGCCTGAGCGCTTGCTGATGGGTAA
AGTCACCTCTCGTCTTGGACTTACCCGTCTCACATTCCAGCCGTACAGCC
ACAAGCAGCTGCAAGAGATCGTTACCGCCCGCCTGGGAGGATCGGAGACT
TTTAAAGGCGAGGCCGTGCAGCTGGTGGCGCGCAAGGTAGCCGCCGTTTC
CGGTGATGCTCGCCGAGCTCTGGACATCTGCCGGCGTGCTACAGAAATTG
CTGATACGGCTGCGGTCAAGTGCGTCACAATGCTGCACGTGCAGCAGGCA
TTGGCCGAGATGATAGCCAGTGCCAAGGTGCAGGCCATTAGGAACTGTTC
GCGGATGGAGCAGATCTTCTTGCAGGCAATTGCAGCTGAAGTTACGCGCA
CTGGCGTCGAGGAGACGACTTTCATGGGCGTCTATCAGCAGGTGGAAACT
ATTGCCGCCTTCATGGGCGTGACCTTTCCACCACCAGGACGCGCCCTGCG
CTTGTGCTCCAAGCTGGGCGCCGAGCGACTCATCATCAGTGAACATTCCC
GCAATGACCTCTTTCAGAAAATCCTGCTCAACGTCAGCGCTGATGACATT
CACTACGCCCTCAGAGTGGAAGAGATGGTCAACTAAGGCCATAATGCAAG
AACAAACGAATAAGAAGTTAATTAAGCACATTAAATTCTCATCTCCATTT
TTAAGACTCCAAATCCAGGTTACTTGACCTATCACATTTCCACCATTTTT
AAATCATTCATTATTCATACAACATTGTAATAGCTTAAGCGTTTTTAAAT
TATTTCTTTTTAAGCGTCATGTTTAAACAATTTAAAGTACAAACTCGTTA
CTAAAAATACCAAATAGAACACCAGCACAGTGTAAAAAAAAAAAAAAAAA
AAAAA

LD11626.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Orc1-RA 3259 Orc1-RA 90..3224 1..3135 15675 100 Plus
CG2144-RA 2949 CG2144-RA 2815..2949 3135..3001 675 100 Minus
CG2144.a 2935 CG2144.a 2824..2935 3135..3024 560 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3411631..3413047 1417..1 7085 100 Minus
chr2R 21145070 chr2R 3410683..3411566 2300..1417 4375 99.7 Minus
chr2R 21145070 chr2R 3409787..3410624 3133..2296 4190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7524281..7525697 1417..1 7085 100 Minus
2R 25286936 2R 7523333..7524216 2300..1417 4420 100 Minus
2R 25286936 2R 7522435..7523274 3135..2296 4200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7525480..7526896 1417..1 7085 100 Minus
2R 25260384 2R 7524532..7525415 2300..1417 4420 100 Minus
2R 25260384 2R 7523634..7524473 3135..2296 4200 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:32:53 has no hits.

LD11626.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:33:57 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3409787..3410623 2297..3133 100 <- Minus
chr2R 3410687..3411565 1418..2296 99 <- Minus
chr2R 3411631..3413047 1..1417 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:19 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 1..2775 112..2886 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:54:04 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 1..2775 112..2886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:54 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 1..2775 112..2886 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:36:34 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 1..2775 112..2886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:47 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 1..2775 112..2886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:06:40 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 12..3144 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:54:04 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 12..3144 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:54 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 20..3152 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:36:35 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 12..3144 1..3133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:47 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
Orc1-RA 20..3152 1..3133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:57 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7522437..7523273 2297..3133 100 <- Minus
2R 7523337..7524215 1418..2296 100 <- Minus
2R 7524281..7525697 1..1417 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:57 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7522437..7523273 2297..3133 100 <- Minus
2R 7523337..7524215 1418..2296 100 <- Minus
2R 7524281..7525697 1..1417 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:57 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7522437..7523273 2297..3133 100 <- Minus
2R 7523337..7524215 1418..2296 100 <- Minus
2R 7524281..7525697 1..1417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:54 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3409942..3410778 2297..3133 100 <- Minus
arm_2R 3410842..3411720 1418..2296 100 <- Minus
arm_2R 3411786..3413202 1..1417 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:19:14 Download gff for LD11626.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7523636..7524472 2297..3133 100 <- Minus
2R 7524536..7525414 1418..2296 100 <- Minus
2R 7525480..7526896 1..1417 100   Minus

LD11626.pep Sequence

Translation from 111 to 2885

> LD11626.pep
MVNKENARSVGQQVKWIGSQDELPPVKNLEHKNVYFYQKCIYGPLTLSVG
DFILVSNADAAEPDTVSGCDVARILHMYELRELTDREPCRAIVQWYSWPK
AIPHNKYDDDEVAIDFSLEVIEEHRPYDNDVALGAIYRKCIVLEGTSKTS
AEEILKRHANKLKSTACPMFVSRYRFVKVKRSYRLIPLEIHLEQPEDNAR
PTRSSRKSLTAHRESKRSISARHDDTAGNKGSSVEKRRRASMAASSSVEF
IDVNSFICENKVSPIKIVGGRSVVRLSEKKNAPEINANYLPASPLTEKNA
KVETPKSRASAARRNLNLSLDRGADTTADSDCLNYSIVQQTPDPKTPSND
MKIKLRLSERRRSVRLASMDVDPLSLEEAVQEPNAQGRKRLGVANGDIYH
TPTKKSKEPLESAAATEQTPSTRRKSILKSATSRLAEGTPRRSIHLSNIV
EQRVFEDDEIISTPKRGRSKKTVQDNDEDYSPKKSVQKTPTRTRRSSTTT
KTATTPSKGITTATATPMTPSQKMKKIRAGELSPSMQQRTDLPAKDSSKS
ELQLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGGCMYVSGVP
GTGKTATVTGVIRTLQRMAKQNELPAFEYLEINGMRLTEPRQAYVQIYKQ
LTGKTVSWEQAHALLEKRFTTPAPRRVTTVLLVDELDILCNRRQDVVYNL
LDWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRLGLTRLTFQPYSHKQL
QEIVTARLGGSETFKGEAVQLVARKVAAVSGDARRALDICRRATEIADTA
AVKCVTMLHVQQALAEMIASAKVQAIRNCSRMEQIFLQAIAAEVTRTGVE
ETTFMGVYQQVETIAAFMGVTFPPPGRALRLCSKLGAERLIISEHSRNDL
FQKILLNVSADDIHYALRVEEMVN*

LD11626.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13670-PA 915 GF13670-PA 1..913 1..922 3969 81.4 Plus
Dana\GF10154-PA 638 GF10154-PA 241..470 566..798 343 35 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10735-PA 913 GG10735-PA 1..913 1..924 4460 93.2 Plus
Dere\GG15067-PA 667 GG15067-PA 245..499 538..798 350 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19810-PA 919 GH19810-PA 1..917 1..920 3621 73.7 Plus
Dgri\GH22514-PA 613 GH22514-PA 191..449 537..798 336 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Orc1-PA 924 CG10667-PA 1..924 1..924 4686 100 Plus
Cdc6-PA 662 CG5971-PA 90..494 393..798 359 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19096-PA 908 GI19096-PA 1..906 1..920 3658 76 Plus
Dmoj\GI12416-PA 622 GI12416-PA 230..458 567..798 340 36 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20109-PA 933 GL20109-PA 1..929 1..922 3922 79.3 Plus
Dper\GL10294-PA 616 GL10294-PA 204..449 549..798 305 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10479-PA 935 GA10479-PA 1..931 1..922 3916 79.7 Plus
Dpse\GA19269-PA 616 GA19269-PA 204..449 549..798 313 33.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20781-PA 924 GM20781-PA 1..924 1..924 4837 97.3 Plus
Dsec\GM24924-PA 592 GM24924-PA 153..424 518..798 350 33.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10243-PA 536 GD10243-PA 11..536 397..924 2710 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20070-PA 923 GJ20070-PA 1..921 1..920 3656 75.1 Plus
Dvir\GJ12309-PA 613 GJ12309-PA 125..449 468..798 347 30.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10698-PA 888 GK10698-PA 1..881 1..921 3481 74.7 Plus
Dwil\GK17476-PA 605 GK17476-PA 195..440 549..798 321 34.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23860-PA 768 GE23860-PA 1..745 1..755 3785 93.8 Plus
Dyak\GE23871-PA 118 GE23871-PA 1..118 807..924 617 97.5 Plus
Dyak\GE21291-PA 706 GE21291-PA 230..538 482..798 357 32.1 Plus

LD11626.hyp Sequence

Translation from 111 to 2885

> LD11626.hyp
MVNKENARSVGQQVKWIGSQDELPPVKNLEHKNVYFYQKCIYGPLTLSVG
DFILVSNADAAEPDTVSGCDVARILHMYELRELTDREPCRAIVQWYSWPK
AIPHNKYDDDEVAIDFSLEVIEEHRPYDNDVALGAIYRKCIVLEGTSKTS
AEEILKRHANKLKSTACPMFVSRYRFVKVKRSYRLIPLEIHLEQPEDNAR
PTRSSRKSLTAHRESKRSISARHDDTAGNKGSSVEKRRRASMAASSSVEF
IDVNSFICENKVSPIKIVGGRSVVRLSEKKNAPEINANYLPASPLTEKNA
KVETPKSRASAARRNLNLSLDRGADTTADSDCLNYSIVQQTPDPKTPSND
MKIKLRLSERRRSVRLASMDVDPLSLEEAVQEPNAQGRKRLGVANGDIYH
TPTKKSKEPLESAAATEQTPSTRRKSILKSATSRLAEGTPRRSIHLSNIV
EQRVFEDDEIISTPKRGRSKKTVQDNDEDYSPKKSVQKTPTRTRRSSTTT
KTATTPSKGITTATATPMTPSQKMKKIRAGELSPSMQQRTDLPAKDSSKS
ELQLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGGCMYVSGVP
GTGKTATVTGVIRTLQRMAKQNELPAFEYLEINGMRLTEPRQAYVQIYKQ
LTGKTVSWEQAHALLEKRFTTPAPRRVTTVLLVDELDILCNRRQDVVYNL
LDWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRLGLTRLTFQPYSHKQL
QEIVTARLGGSETFKGEAVQLVARKVAAVSGDARRALDICRRATEIADTA
AVKCVTMLHVQQALAEMIASAKVQAIRNCSRMEQIFLQAIAAEVTRTGVE
ETTFMGVYQQVETIAAFMGVTFPPPGRALRLCSKLGAERLIISEHSRNDL
FQKILLNVSADDIHYALRVEEMVN*

LD11626.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Orc1-PA 924 CG10667-PA 1..924 1..924 4686 100 Plus
Cdc6-PA 662 CG5971-PA 90..494 393..798 359 28.2 Plus