Clone LD11641 Report

Search the DGRC for LD11641

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:116
Well:41
Vector:pBS SK-
Associated Gene/TranscriptNTPase-RA
Protein status:LD11641.pep: gold
Preliminary Size:1959
Sequenced Size:2111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3059 2001-01-01 Release 2 assignment
CG3059 2001-10-10 Blastp of sequenced clone
CG3059 2003-01-01 Sim4 clustering to Release 3
NTPase 2008-04-29 Release 5.5 accounting
NTPase 2008-08-15 Release 5.9 accounting
NTPase 2008-12-18 5.12 accounting

Clone Sequence Records

LD11641.complete Sequence

2111 bp (2111 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061134

> LD11641.complete
ATAAAGCCCGTAAAATAGACCGAAAACAAGAGAAGAAATGAAATTCATTG
ACATTCGCAGAGATAGCAAACAGCCAGCGTGTTAATATTTGAGCAGCAAA
CAACTGAAATGTGTTCCGACCAAGAAACCGGCCATGCATAAATGTGGAGC
CAGCAGAGGCAACGGAACGAACCATGAAATACGAATATAAGCTGCTGGCC
ACGGATGAGAAGCCACCGCGGCGGAAAAGTAGCGGATCACCAAATGCCAG
CAGTGGTGGAAACCGCGGGCCCAGCGGCCTCAAGATCTCCTTCCTGTGCC
TGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTTGGCTTCGTCTCCGAG
AACGCCAGTCCGTATCTGGCCCGTTTGGCCTCCAAGTTTGGCTACAGCAA
GGTGCAGTATGCGGCCATCATCGATGCCGGATCGACGGGCAGCCGTGTGC
TGGCCTACAAGTTCAATCGCAGCTTCATCGACAACAAACTGGTGCTGTAC
GAGGAGCTGTTCAAGGAGCGCAAGCCGGGTCTGAGCTCCTTCGCGGATAA
TCCCGCCGAGGGTGCCCACTCCATCAAACTGCTGCTGGACGAGGCCCGCG
CCTTCATACCCAAGGAGCACTGGTCTTCCACACCGCTGGTTCTGAAAGCG
ACCGCCGGCCTGAGACTCCTGCCCGCCAGCAAGGCGGAAAACATTCTAAA
TGCCGTCCGAGATCTCTTCGCCAAGTCCGAGTTTAGTGTGGATATGGATG
CCGTGGAGATCATGGACGGCACGGACGAGGGCATCTTCAGCTGGTTTACC
GTGAACTTCCTGCTGGGCCGCCTGTCCAAGACGAACCAGGCAGCTGCCTT
GGACTTGGGCGGCGGTAGCACGCAGGTAACCTTCTCGCCAACGGATCCGG
ACCAGGTGCCCGTGTACGATAAGTACATGCACGAGGTGGTCACGTCCAGC
AAGAAGATCAACGTCTTCACGCACAGCTATCTGGGACTGGGTCTAATGGC
TGCACGCCATGCTGTCTTCACGCACGGCTACAAGAAGGAGGATACGGTGC
TGGAGAGCGTCTGCGTGAATCCCATAATCGCCAATCGCACGTGGACATAC
GGCAATGTGCAGTACAAGGTCAGCGGCAAGGAGAATGGCAAGTCCAGTGC
CGAGCAGCCCATTGTGGACTTCGATGCCTGCCTGGAGCTGGTCAAGAGCA
AGGTAATGCCGCTGGTCAAGCCCAAGCCGTTCACACTCAAGCAGCACGCG
GTGGCCGCGTTCAGCTACTACTTTGAGCGGGCCATCGAGTCGGGTCTGGT
GGATCCACTGGCTGGCGGCGAGACCACGGTGGAAGCTTATCGCAAGAAGG
CCCAGGAGATCTGTGCCATTCCCAACGATGAGCAGCCCTTCATGTGCTTC
GACCTTACCTTCATCTCGACGCTGCTGCGCGAAGGATTTGGCCTCAACGA
TGGCAAGAAGATTAAGCTTTACAAGAAGATAGATGGCCACGAAATCTCCT
GGGCCCTCGGCTGTGCATACAACGTTCTGACTAGCGACGAGAAATTCAGT
AATTCCTAATGCTCCTCCATTAGTCCGTAGTTGAAGACATAAATTTTAAA
CGGATTGTTAGCTGAAATTGTTTATAGAGTGCCTTAGACGTGCATCGAGT
ATACTACAATCACAACACACCGCACACACCGCACACACCACACACACACA
GAACACACACTCGGACATTGTCCACAGCATATGTATGATGTGGTCGATTA
ATATTTGTTTGTGCTCTGCAAGATTCGTTTCAATTGCCTCTAATTGAGCT
AACCCATACACGGTGACTACACTTAGCGTTTAGTTTGTAATTCCAATTTT
GTGTGATTCGCCATATTTGTAATGCAGTTTTTTGCCAACTTCTTAACTAA
TTAGTCCCTACACTCGTATCGTATCCTCATGTACATAAATTTACACAATG
ATATGTATTTACCTAATATGTATAACGACCTAGACTACTAGCCGCAAACA
TTTCACACGGTTTTTCACACATGCAAATGTTAGTTTAGTTATCTTTGCAA
ATAAATCAAATGTTAACTGATCTGAATTAAAGTAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

LD11641.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
NTPase-RA 2173 NTPase-RA 79..2165 1..2087 10435 100 Plus
NTPase-RC 2259 NTPase-RC 358..2251 194..2087 9470 100 Plus
NTPase-RB 2229 NTPase-RB 329..2221 195..2087 9465 100 Plus
NTPase-RC 2259 NTPase-RC 79..272 1..194 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2881032..2882162 1466..336 5580 99.6 Minus
chr2L 23010047 chr2L 2880354..2880972 2083..1465 3035 99.4 Minus
chr2L 23010047 chr2L 2882570..2882763 194..1 925 98.5 Minus
chr2L 23010047 chr2L 2882344..2882484 334..194 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2881382..2882512 1466..336 5655 100 Minus
2L 23513712 2L 2880700..2881322 2087..1465 3115 100 Minus
2L 23513712 2L 2882920..2883113 194..1 970 100 Minus
2L 23513712 2L 2882691..2882834 337..194 720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2881382..2882512 1466..336 5655 100 Minus
2L 23513712 2L 2880700..2881322 2087..1465 3115 100 Minus
2L 23513712 2L 2882920..2883113 194..1 970 100 Minus
2L 23513712 2L 2882691..2882834 337..194 720 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:31:49 has no hits.

LD11641.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:32:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2880354..2880970 1467..2083 91 <- Minus
chr2L 2881032..2882161 337..1466 99 <- Minus
chr2L 2882342..2882483 195..336 99 <- Minus
chr2L 2882570..2882763 1..194 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:20 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..1386 174..1559 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:02 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..1386 174..1559 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:02:52 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..1386 174..1559 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..1386 174..1559 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:31:55 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..1386 174..1559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:45 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..2081 1..2081 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:01 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..2082 1..2082 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:02:52 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 14..2095 1..2082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 1..2081 1..2081 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:31:55 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 14..2095 1..2082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2880704..2881320 1467..2083 100 <- Minus
2L 2881382..2882511 337..1466 100 <- Minus
2L 2882692..2882833 195..336 100 <- Minus
2L 2882920..2883113 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2880704..2881320 1467..2083 100 <- Minus
2L 2881382..2882511 337..1466 100 <- Minus
2L 2882692..2882833 195..336 100 <- Minus
2L 2882920..2883113 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:32:51 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2880704..2881320 1467..2083 100 <- Minus
2L 2881382..2882511 337..1466 100 <- Minus
2L 2882692..2882833 195..336 100 <- Minus
2L 2882920..2883113 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:02:52 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2880704..2881320 1467..2083 100 <- Minus
arm_2L 2881382..2882511 337..1466 100 <- Minus
arm_2L 2882692..2882833 195..336 100 <- Minus
arm_2L 2882920..2883113 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:23 Download gff for LD11641.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2880704..2881320 1467..2083 100 <- Minus
2L 2881382..2882511 337..1466 100 <- Minus
2L 2882692..2882833 195..336 100 <- Minus
2L 2882920..2883113 1..194 100   Minus

LD11641.pep Sequence

Translation from 173 to 1558

> LD11641.pep
MKYEYKLLATDEKPPRRKSSGSPNASSGGNRGPSGLKISFLCLIISVILL
LFVFGFVSENASPYLARLASKFGYSKVQYAAIIDAGSTGSRVLAYKFNRS
FIDNKLVLYEELFKERKPGLSSFADNPAEGAHSIKLLLDEARAFIPKEHW
SSTPLVLKATAGLRLLPASKAENILNAVRDLFAKSEFSVDMDAVEIMDGT
DEGIFSWFTVNFLLGRLSKTNQAAALDLGGGSTQVTFSPTDPDQVPVYDK
YMHEVVTSSKKINVFTHSYLGLGLMAARHAVFTHGYKKEDTVLESVCVNP
IIANRTWTYGNVQYKVSGKENGKSSAEQPIVDFDACLELVKSKVMPLVKP
KPFTLKQHAVAAFSYYFERAIESGLVDPLAGGETTVEAYRKKAQEICAIP
NDEQPFMCFDLTFISTLLREGFGLNDGKKIKLYKKIDGHEISWALGCAYN
VLTSDEKFSNS*

LD11641.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14909-PA 462 GF14909-PA 1..462 1..461 2377 96.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24477-PA 471 GG24477-PA 11..471 1..461 2449 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11050-PA 463 GH11050-PA 1..463 1..461 2210 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
NTPase-PA 461 CG3059-PA 1..461 1..461 2373 100 Plus
NTPase-PE 464 CG3059-PE 11..464 8..461 2335 100 Plus
NTPase-PF 524 CG3059-PF 11..524 8..461 2122 84 Plus
NTPase-PC 271 CG3059-PC 1..271 191..461 1421 100 Plus
NTPase-PD 271 CG3059-PD 1..271 191..461 1421 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17567-PA 464 GI17567-PA 1..464 1..461 2146 88.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26295-PA 465 GL26295-PA 1..465 1..461 2278 95.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15897-PA 465 GA15897-PA 1..465 1..461 2273 95.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18184-PA 464 GM18184-PA 11..464 8..461 2405 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22791-PA 464 GD22791-PA 11..464 8..461 2408 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17910-PA 463 GJ17910-PA 1..463 1..461 2208 89.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18683-PA 466 GK18683-PA 1..466 1..461 2132 90.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14979-PA 471 GE14979-PA 11..471 1..461 2443 99.1 Plus

LD11641.hyp Sequence

Translation from 173 to 1558

> LD11641.hyp
MKYEYKLLATDEKPPRRKSSGSPNASSGGNRGPSGLKISFLCLIISVILL
LFVFGFVSENASPYLARLASKFGYSKVQYAAIIDAGSTGSRVLAYKFNRS
FIDNKLVLYEELFKERKPGLSSFADNPAEGAHSIKLLLDEARAFIPKEHW
SSTPLVLKATAGLRLLPASKAENILNAVRDLFAKSEFSVDMDAVEIMDGT
DEGIFSWFTVNFLLGRLSKTNQAAALDLGGGSTQVTFSPTDPDQVPVYDK
YMHEVVTSSKKINVFTHSYLGLGLMAARHAVFTHGYKKEDTVLESVCVNP
IIANRTWTYGNVQYKVSGKENGKSSAEQPIVDFDACLELVKSKVMPLVKP
KPFTLKQHAVAAFSYYFERAIESGLVDPLAGGETTVEAYRKKAQEICAIP
NDEQPFMCFDLTFISTLLREGFGLNDGKKIKLYKKIDGHEISWALGCAYN
VLTSDEKFSNS*

LD11641.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
NTPase-PA 461 CG3059-PA 1..461 1..461 2373 100 Plus
NTPase-PE 464 CG3059-PE 11..464 8..461 2335 100 Plus
NTPase-PF 524 CG3059-PF 11..524 8..461 2122 84 Plus
NTPase-PC 271 CG3059-PC 1..271 191..461 1421 100 Plus
NTPase-PD 271 CG3059-PD 1..271 191..461 1421 100 Plus