Clone LD11650 Report

Search the DGRC for LD11650

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:116
Well:50
Vector:pBS SK-
Associated Gene/TranscriptCG4538-RA
Protein status:LD11650.pep: gold
Sequenced Size:3124

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4538 2008-04-29 Picked prior to 5.5
CG4538 2008-08-15 Release 5.9 accounting
CG4538 2008-12-18 5.12 accounting
CG4538 2011-03-01 Transcript Validation

Clone Sequence Records

LD11650.complete Sequence

3124 bp assembled on 2008-07-31

GenBank Submission: BT032831

> LD11650.complete
AAATTACGTGCAGAGCGCAATCTATTCCCCCCATTTTCCACCGAAAATAC
AGCAAGGCAGGCGGAAAATCATCCAAATTGCGACGCACTTTGGCGAGCGA
CGGATAACCAACAAGTGGATATAGAAAAGCAATCCCTGCAAAGCGAGGCA
TCCCCAGCAGAAGTCACAACAATAACTTTGCAGATCAGCAGAGCAAGAAG
AAGAAGCGGCCGCCAGCTGAGTAGCAAATCGGTGCAAAGCAGGGGCGCAG
GGGAATCCGAGTCCAGGAGCAACTGCAGCGGGCGCGGAGGAAGCGGTAGA
CGGAACAGAGGCACAGAGGCGGCGGGCAGCAGCCACCATGAGCATGGTGC
GGCGGATTATCCTGCTGGGCCCCAAATACAGTGTGTGGGCAAAGGGAAGC
GGAGCTGGTCAAACACATGGCTCGGCAAGATGCGTTATCCTAAGCGCAGG
TTCTGCGGAGAACAGCGACTGTGGCGTACGACGCTTTCACCTGGCAACGC
GGAACTGCGCGAGGAATCGACTGATGAGACTGGAGCCCGCGATGGCAATA
CCGGCGTATATTGATGTAACTAACGCACACTCAAGAACGCCAGAGGACTC
CAGCGAGAGTGGGAGCGGCAGCGAAGGGGGAGCCAGTGCGTCGGGAGGTA
GTGGAGCGAAGAGCCCCGGCGGTGCGGCTGGGTCTGGAGCAAGTTCGACC
AGTGGTGCCGATCCGCCAGGCGGTGGCAGTGACAAGTTCCTCTCGTGCCC
AAAGTGCGGCAGCGCCTGCACCCAGGTTGAGACCTTTGTCAGCTCGACGC
GGTTCGTTAAGTGCGCCAAGTGCAACTACTTCTTCGTGGTGCTCTCGGAG
GTGGAGACTAAGCAGCGCACCAAGGACGAGCCCAAAAACCAGCGCAAGCC
GCCACCTCCGCCACAGAAAATCATGGAGTATCTGGACAAACACGTGGTGG
GCCAAGATTTTGCCAAAAAGGTGCTGGCGGTGGCCGTCTACAATCATTAT
AAGCGCATCCATCACAATCTGCCGCAACTGCAAAACCAGGGAGCGGGTGC
CAGCAATGGAGCCGGTGGCGGCCTAGATGGTATTCCTCGGCCCGATCTTC
TACACATCACCGGTATTGGTCACACGCTGAACAGCTCCCCGGGCAACGAA
CTGCCACCAAAGTCGCCGACTCAAATGGGCATGGGCGGAGGAATGGGAGG
ACCTGGACTTGGAGCAGGACTAACCGGCGCATCATCTAGCAATGCGCGTG
GAGGTGGCGACAACCGGTCCGGATCAGAAATACTTGACCGCCAGTCCACC
GATGTCAAACTGGAGAAGAGTAACATTATCATGTTGGGCCCCACGGGATC
CGGTAAGACGCTGATCGCCCAGACGATCGCCAAGTGCCTGGATGTGCCCT
TCGCCATTTGCGACTGCACCACGTTAACACAGGCGGGCTATGTGGGCGAG
GACATCGAAAGCGTAATTTCAAAGCTTCTGCAAGATGCCAACTACAATGT
AGAGCGCGCACAGACGGGCATTGTTTTCCTCGACGAGGTGGACAAAATCG
GTGCCGTCCCCGGAATCCATCAGCTTCGTGACGTTGGCGGCGAGGGCGTC
CAGCAAGGCATGCTGAAAATGCTCGAAGGCACAGTGGTCAACGTGCCGGA
GCGTAACTCCCCGCGAAAGCTGCGTGGCGAAACGGTCCAGGTGGACACCA
CAAATATCCTTTTCGTGGCCTCTGGTGCCTACACAGGACTGGACAGGCTT
ATCGCACGTCGTCTCAACGAAAAGTATTTGGGTTTCGGCATGCCATCGAC
CAGCGGATCTGGCCGTCGTGCAGCTCAATCAGCCGCCAGTCCCATGGACA
ACGACCAGGAAGAGCGTGATAAATGCCTGACCAAAGTGCAGGCCCGTGAT
CTCGTTGAGTTCGGCATGATACCGGAATTCGTTGGACGTTTCCCGGTTAT
CGTTCCCTTCCACAGTTTGAACGTTAGCATGCTGGTGCGCATCCTAACCG
AGCCGCGAAACGCTCTAGTGCCGCAATATAAGGCACTGTTGGGTCTTGAT
GAGGTGGACCTTACGTTCACCGAGGATGCTGTGAAGTCGATAGCCCAGCT
TGCAATGGAAAGGCACACTGGAGCTCGTGGACTGCGCTCTATAATGGAAC
AACTGCTGCTGGATCCCATGTTCATAGTGCCTGGTTCAGACATTCGGGGT
GTTCACATAACCGCCGACTATGTTAAAGGCAGCGCCACCCCCGAGTACAG
CCGCGATGCAGACGCCGCGGCATCTGGGACTGTTGCCACGGATTCCGATA
CCACAACCGATAATGATAAGAACTTTGAGAATAGTGAGAAAGTACGACTA
AAACAGTAAATCAAACAGAGATACCCACATCCAAAGCCAACCAAAACAGA
AATCGAGACAACACTTGAACAAAAGAGAAAACTTTCAATTCGCAACGCTT
TCCGAATTGCTTGTTCTTTGCAAACTCTTTTGTCTTCTATCCACTACTGT
TCAGCTTGTTAAACTCGTCCAGCTGCTTAATTTCGAATCGTCAGCGCTAA
TTTCTCGCATAAACACAATTTAATGTTGAACCCTTATGATACTTTCATTT
GCCCACTCTAACATGTATATTTTTTAGTCTGGTTTGAATGGTAAATTGAT
TGGTGCGTCGTAGATCCCTACCTCGAACCTATCACTCTGTAAAATATGAA
CCGCTGAGGAGTGTATACATTTATAAAGAATGTCCTCAATCCCCAAATGC
ATCTGTGATTCATAAACGACGAGCAGCGCAGTCTTTTGAGCCCGAAGCAA
TTGTAAGTGGAACAACAAATCCTAAAGGGATATTTAAATAAATGCCACAG
TTTCTTAAACATTATATTACACAAATATCGGAAATCTGCAATGTTGGCAA
TGATGTGGTCCATTGGCGCTAGGAACCTCTTTTGCATATAACAATTATAT
ATACAAACGTAAACGTATATTTAGGCAAATTTTTGCATAGTCTAAATTGA
GTTTCTAAATGAGTTCTTGTAGCGTTGTAAAGATGACAAGCGAGAAGCAC
GTTCTACCTTTAACTAATTTAAGTTGAAAAAAACATTTTTAAAACAAAAA
ACAAATAAAAAAAAAAAAAAAAAA

LD11650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4538-RA 3691 CG4538-RA 494..3616 1..3123 15585 99.9 Plus
CG4538.f 3815 CG4538.f 455..3577 1..3123 15585 99.9 Plus
CG4538.e 4004 CG4538.e 807..3929 1..3123 15585 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15724365..15725744 1774..395 6900 100 Minus
chr3R 27901430 chr3R 15722782..15723742 3106..2146 4805 100 Minus
chr3R 27901430 chr3R 15726773..15727168 396..1 1980 100 Minus
chr3R 27901430 chr3R 15723806..15724029 2147..1924 1120 100 Minus
chr3R 27901430 chr3R 15724157..15724310 1925..1772 770 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19900432..19901811 1774..395 6900 100 Minus
3R 32079331 3R 19898832..19899809 3123..2146 4860 99.8 Minus
3R 32079331 3R 19902840..19903235 396..1 1980 100 Minus
3R 32079331 3R 19899873..19900096 2147..1924 1120 100 Minus
3R 32079331 3R 19900224..19900377 1925..1772 770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19641263..19642642 1774..395 6900 100 Minus
3R 31820162 3R 19639663..19640640 3123..2146 4860 99.7 Minus
3R 31820162 3R 19643671..19644066 396..1 1980 100 Minus
3R 31820162 3R 19640704..19640927 2147..1924 1120 100 Minus
3R 31820162 3R 19641055..19641208 1925..1772 770 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:48:26 has no hits.

LD11650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:49:34 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15722816..15723741 2147..3072 100 <- Minus
chr3R 15723807..15724028 1925..2146 100 <- Minus
chr3R 15724158..15724307 1775..1924 100 <- Minus
chr3R 15724365..15725743 396..1774 100 <- Minus
chr3R 15726774..15727168 1..395 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:23 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..2022 338..2359 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:10:32 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..2022 338..2359 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:58 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..2022 338..2359 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:48:24 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..2022 338..2359 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:13:27 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..2022 338..2359 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:50:12 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 455..3560 1..3106 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:10:32 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 455..3560 1..3106 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:58 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 455..3560 1..3106 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-31 13:48:57 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 455..3560 1..3106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:13:27 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
CG4538-RA 1..3106 1..3106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:34 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19900432..19901810 396..1774 100 <- Minus
3R 19898849..19899808 2147..3106 100 <- Minus
3R 19899874..19900095 1925..2146 100 <- Minus
3R 19900225..19900374 1775..1924 100 <- Minus
3R 19902841..19903235 1..395 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:34 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19900432..19901810 396..1774 100 <- Minus
3R 19898849..19899808 2147..3106 100 <- Minus
3R 19899874..19900095 1925..2146 100 <- Minus
3R 19900225..19900374 1775..1924 100 <- Minus
3R 19902841..19903235 1..395 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:34 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19900432..19901810 396..1774 100 <- Minus
3R 19898849..19899808 2147..3106 100 <- Minus
3R 19899874..19900095 1925..2146 100 <- Minus
3R 19900225..19900374 1775..1924 100 <- Minus
3R 19902841..19903235 1..395 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:58 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15724571..15725530 2147..3106 100 <- Minus
arm_3R 15725596..15725817 1925..2146 100 <- Minus
arm_3R 15725947..15726096 1775..1924 100 <- Minus
arm_3R 15726154..15727532 396..1774 100 <- Minus
arm_3R 15728563..15728957 1..395 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:40:34 Download gff for LD11650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19639680..19640639 2147..3106 100 <- Minus
3R 19640705..19640926 1925..2146 100 <- Minus
3R 19641056..19641205 1775..1924 100 <- Minus
3R 19641263..19642641 396..1774 100 <- Minus
3R 19643672..19644066 1..395 100   Minus

LD11650.pep Sequence

Translation from 337 to 2358

> LD11650.pep
MSMVRRIILLGPKYSVWAKGSGAGQTHGSARCVILSAGSAENSDCGVRRF
HLATRNCARNRLMRLEPAMAIPAYIDVTNAHSRTPEDSSESGSGSEGGAS
ASGGSGAKSPGGAAGSGASSTSGADPPGGGSDKFLSCPKCGSACTQVETF
VSSTRFVKCAKCNYFFVVLSEVETKQRTKDEPKNQRKPPPPPQKIMEYLD
KHVVGQDFAKKVLAVAVYNHYKRIHHNLPQLQNQGAGASNGAGGGLDGIP
RPDLLHITGIGHTLNSSPGNELPPKSPTQMGMGGGMGGPGLGAGLTGASS
SNARGGGDNRSGSEILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKC
LDVPFAICDCTTLTQAGYVGEDIESVISKLLQDANYNVERAQTGIVFLDE
VDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETV
QVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAA
SPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLV
RILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGARGLR
SIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDADAAASGTVA
TDSDTTTDNDKNFENSEKVRLKQ*

LD11650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17351-PA 675 GF17351-PA 1..675 1..673 2843 86.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15775-PA 672 GG15775-PA 1..672 1..673 3076 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23301-PA 675 GH23301-PA 1..675 1..673 2541 78.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4538-PD 673 CG4538-PD 1..673 1..673 3472 100 Plus
CG4538-PA 673 CG4538-PA 1..673 1..673 3472 100 Plus
CG4538-PC 679 CG4538-PC 1..668 1..668 3449 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10327-PA 672 GI10327-PA 1..672 1..673 2577 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12413-PA 666 GL12413-PA 1..666 1..673 2576 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27659-PA 666 GA27659-PA 1..666 1..673 2565 80.8 Plus
Dpse\GA18242-PA 666 GA18242-PA 1..666 1..673 2563 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26887-PA 673 GM26887-PA 1..673 1..673 3535 98.7 Plus
Dsec\GM24560-PA 667 GM24560-PA 236..663 178..658 1266 57 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20094-PA 673 GD20094-PA 1..673 1..673 3529 98.7 Plus
Dsim\GD12633-PA 694 GD12633-PA 251..670 168..642 1261 56.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10182-PA 683 GJ10182-PA 1..683 1..673 2592 78.3 Plus
Dvir\GJ14616-PA 1461 GJ14616-PA 8..108 241..340 330 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22807-PA 683 GK22807-PA 1..683 1..673 2664 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25106-PA 672 GE25106-PA 1..672 1..673 3472 97.5 Plus
Dyak\GE20032-PA 812 GE20032-PA 333..805 153..672 1410 58 Plus

LD11650.hyp Sequence

Translation from 337 to 2358

> LD11650.hyp
MSMVRRIILLGPKYSVWAKGSGAGQTHGSARCVILSAGSAENSDCGVRRF
HLATRNCARNRLMRLEPAMAIPAYIDVTNAHSRTPEDSSESGSGSEGGAS
ASGGSGAKSPGGAAGSGASSTSGADPPGGGSDKFLSCPKCGSACTQVETF
VSSTRFVKCAKCNYFFVVLSEVETKQRTKDEPKNQRKPPPPPQKIMEYLD
KHVVGQDFAKKVLAVAVYNHYKRIHHNLPQLQNQGAGASNGAGGGLDGIP
RPDLLHITGIGHTLNSSPGNELPPKSPTQMGMGGGMGGPGLGAGLTGASS
SNARGGGDNRSGSEILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKC
LDVPFAICDCTTLTQAGYVGEDIESVISKLLQDANYNVERAQTGIVFLDE
VDKIGAVPGIHQLRDVGGEGVQQGMLKMLEGTVVNVPERNSPRKLRGETV
QVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAA
SPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLV
RILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGARGLR
SIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYSRDADAAASGTVA
TDSDTTTDNDKNFENSEKVRLKQ*

LD11650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4538-PD 673 CG4538-PD 1..673 1..673 3472 100 Plus
CG4538-PA 673 CG4538-PA 1..673 1..673 3472 100 Plus
CG4538-PC 679 CG4538-PC 1..668 1..668 3449 100 Plus