Clone LD11652 Report

Search the DGRC for LD11652

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:116
Well:52
Vector:pBS SK-
Associated Gene/TranscriptCG5708-RA
Protein status:LD11652.pep: gold
Sequenced Size:1101

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5708 2003-01-01 Sim4 clustering to Release 3
CG5708 2004-03-31 Blastp of sequenced clone
CG5708 2008-04-29 Release 5.5 accounting
CG5708 2008-08-15 Release 5.9 accounting
CG5708 2008-12-18 5.12 accounting

Clone Sequence Records

LD11652.complete Sequence

1101 bp (1101 high quality bases) assembled on 2005-08-22

GenBank Submission: BT012487

> LD11652.complete
CGTATACAAGAAATGGTGTTTGAAACCAAAGCGATTTTACTGTTCCTCAT
GGTGTTGTCAAAGAAATTTTCGCTTTTAAATAATTAATTGATGAGTGTAT
ATTTTATGTGGTTTATGCGTTGAGTTTATGGTAGAAACACGGCAATTATG
GAGTTCCACGACTAGGCTTCATTTTTGCACATGTTAAAAGGTTTAAACCA
TAAACAGGACCCATATGCCTTCTACGACTTAAGTCATCAACATTATTTGC
AATGAATGCAACGTTCCATTCATACAGAGACATACTAGCGGCACATCACC
AAGACTCATCTAGTCCTGAGAACTTCGCCCCCATAGTAATTGACTATAGA
AACTCAAACCACACAAAGGACACTGTGGAGACCAACTCGAATATCTCATC
GTCTCAGCTATCGTTCATGGACGAATCTTCAAACGATTTCAATAATCAGC
AGTTAATTCATTCCAACTCCCTTATTAAAGTGTGTGGTGGTTGTGGAGAT
AAAATAAGTGATAGATATCTTTTATACGCTTTGGACAGATACTGGCACAA
TGGCTGCCTTAAATGTCACTGCTGTGGAGCTATGCTAGCAGAAGTGGGTT
CCAGCTGTTTTACGAGGCGAGGCCTGATTCTTTGCAAAAAGGACTATTCC
AGCATGTTCGGGTGCTCCGGAGTTTGTTCTGGCTGCGGAGAAACTATACC
GCCAAGTGAACTGGTAGCGAAAGCACTTACTGGAATAAATAATATCGATT
TACAAAATCAACAAAAACAAATAATTAATTGCGTATTTCATCTAAGGTGC
TTTAGTTGTGCTAAGTGTGGATCCAGTCTGCGTCCTGGTGATAGGTATAC
TATGTTAGGAGCTAGCTTGGTGTGTGAACAAGATTGGCACAAATTACTTA
AGGGCCCCGCCAACTCGAATGGAACGCTTGGACAAAGGAAAGGAAAGGTC
GGTAGGCCCAGAAGATCAAAGGACTAATCAAACTTAATGTCACATAAAAT
ATACATATATTTTAGAACATAGTTCATATTTTTAAATTACCTATAAAAAT
GTAATTAAATCATAATATAAAACAAGACCTTCAAAAAAAAAAAAAAAAAA
A

LD11652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-RA 1389 CG5708-RA 148..1230 1..1083 5415 100 Plus
CG5708.a 1053 CG5708.a 70..1053 99..1082 4920 100 Plus
CG5708-RB 1297 CG5708-RB 246..1138 191..1083 4465 100 Plus
CG5708-RB 1297 CG5708-RB 148..245 1..98 490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10224351..10224664 502..189 1555 99.7 Minus
chr2L 23010047 chr2L 10223506..10223745 1082..843 1200 100 Minus
chr2L 23010047 chr2L 10223805..10224006 848..647 1010 100 Minus
chr2L 23010047 chr2L 10224130..10224285 652..497 780 100 Minus
chr2L 23010047 chr2L 10225516..10225613 98..1 490 100 Minus
chr2L 23010047 chr2L 10224723..10224816 192..99 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10225500..10225813 502..189 1555 99.7 Minus
2L 23513712 2L 10224654..10224894 1083..843 1205 100 Minus
2L 23513712 2L 10224954..10225155 848..647 1010 100 Minus
2L 23513712 2L 10225279..10225434 652..497 780 100 Minus
2L 23513712 2L 10226665..10226762 98..1 490 100 Minus
2L 23513712 2L 10225872..10225965 192..99 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10225500..10225813 502..189 1555 99.6 Minus
2L 23513712 2L 10224654..10224894 1083..843 1205 100 Minus
2L 23513712 2L 10224954..10225155 848..647 1010 100 Minus
2L 23513712 2L 10225279..10225434 652..497 780 100 Minus
2L 23513712 2L 10226665..10226762 98..1 490 100 Minus
2L 23513712 2L 10225872..10225965 192..99 470 100 Minus
Blast to na_te.dros performed 2019-03-15 15:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2312..2423 1074..965 122 58.9 Minus
roo 9092 roo DM_ROO 9092bp 3842..3894 1038..986 120 74.1 Minus

LD11652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:41 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10223506..10223743 845..1082 100 <- Minus
chr2L 10223809..10224000 653..844 100 <- Minus
chr2L 10224130..10224283 499..652 100 <- Minus
chr2L 10224355..10224662 191..498 100 <- Minus
chr2L 10224725..10224816 99..190 100 <- Minus
chr2L 10225516..10225613 1..98 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:24 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RB 1..726 252..977 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:32 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RB 1..726 252..977 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:42:49 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 1..726 252..977 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:15 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RB 1..726 252..977 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:58 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 1..726 252..977 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:15 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 47..1119 1..1073 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:32 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 47..1119 1..1073 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:49 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 47..1128 1..1082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:16 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 47..1119 1..1073 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:58 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 47..1128 1..1082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:41 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10226665..10226762 1..98 100   Minus
2L 10225874..10225965 99..190 100 <- Minus
2L 10224655..10224892 845..1082 100 <- Minus
2L 10224958..10225149 653..844 100 <- Minus
2L 10225279..10225432 499..652 100 <- Minus
2L 10225504..10225811 191..498 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:41 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10226665..10226762 1..98 100   Minus
2L 10225874..10225965 99..190 100 <- Minus
2L 10224655..10224892 845..1082 100 <- Minus
2L 10224958..10225149 653..844 100 <- Minus
2L 10225279..10225432 499..652 100 <- Minus
2L 10225504..10225811 191..498 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:41 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10226665..10226762 1..98 100   Minus
2L 10225874..10225965 99..190 100 <- Minus
2L 10224655..10224892 845..1082 100 <- Minus
2L 10224958..10225149 653..844 100 <- Minus
2L 10225279..10225432 499..652 100 <- Minus
2L 10225504..10225811 191..498 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:49 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10225874..10225965 99..190 100 <- Minus
arm_2L 10226665..10226762 1..98 100   Minus
arm_2L 10224655..10224892 845..1082 100 <- Minus
arm_2L 10224958..10225149 653..844 100 <- Minus
arm_2L 10225279..10225432 499..652 100 <- Minus
arm_2L 10225504..10225811 191..498 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:50 Download gff for LD11652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10224958..10225149 653..844 100 <- Minus
2L 10225279..10225432 499..652 100 <- Minus
2L 10225504..10225811 191..498 100 <- Minus
2L 10225874..10225965 99..190 100 <- Minus
2L 10226665..10226762 1..98 100   Minus
2L 10224655..10224892 845..1082 100 <- Minus

LD11652.pep Sequence

Translation from 251 to 976

> LD11652.pep
MNATFHSYRDILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISS
SQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYWHN
GCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIP
PSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYT
MLGASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPRRSKD*

LD11652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14129-PA 241 GF14129-PA 1..241 1..241 1286 99.6 Plus
Dana\GF22537-PA 408 GF22537-PA 181..318 76..229 305 39 Plus
Dana\GF13843-PA 469 GF13843-PA 81..270 4..218 261 34 Plus
Dana\GF15212-PA 444 GF15212-PA 37..180 73..237 233 34.7 Plus
Dana\GF14867-PA 550 GF14867-PA 56..177 78..217 218 36.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23969-PA 241 GG23969-PA 1..241 1..241 1282 99.2 Plus
Dere\GG19173-PA 419 GG19173-PA 160..257 76..189 270 44.7 Plus
Dere\ap-PA 469 GG10850-PA 81..270 4..218 259 34 Plus
Dere\GG21652-PA 442 GG21652-PA 37..180 73..237 234 34.7 Plus
Dere\GG21675-PA 534 GG21675-PA 54..175 78..217 218 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13372-PA 241 GH13372-PA 1..241 1..241 1135 88 Plus
Dgri\GH12432-PA 447 GH12432-PA 217..354 76..229 309 39 Plus
Dgri\GH20430-PA 469 GH20430-PA 81..275 4..223 256 33.2 Plus
Dgri\GH13485-PA 451 GH13485-PA 37..180 73..237 236 34.7 Plus
Dgri\GH15398-PA 618 GH15398-PA 253..398 76..237 224 33.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-PC 241 CG5708-PC 1..241 1..241 1312 100 Plus
CG5708-PB 241 CG5708-PB 1..241 1..241 1312 100 Plus
CG5708-PA 241 CG5708-PA 1..241 1..241 1312 100 Plus
Bx-PC 313 CG44425-PC 52..227 29..229 335 34.8 Plus
Bx-PA 313 CG44425-PA 52..227 29..229 335 34.8 Plus
Bx-PF 383 CG44425-PF 122..297 29..229 335 34.8 Plus
Bx-PB 384 CG44425-PB 123..298 29..229 335 34.8 Plus
Bx-PD 424 CG44425-PD 52..227 29..229 335 34.8 Plus
ap-PC 468 CG8376-PC 80..274 4..223 268 33.2 Plus
ap-PA 469 CG8376-PA 81..275 4..223 268 33.2 Plus
Lim3-PA 440 CG10699-PA 37..180 73..237 243 34.7 Plus
Lim3-PE 405 CG10699-PE 4..145 75..237 240 34.5 Plus
Lim3-PF 520 CG10699-PF 119..260 75..237 240 34.5 Plus
Lim3-PD 520 CG10699-PD 119..260 75..237 240 34.5 Plus
Lim3-PC 520 CG10699-PC 119..260 75..237 240 34.5 Plus
Lim3-PB 520 CG10699-PB 119..260 75..237 240 34.5 Plus
Lim3-PG 555 CG10699-PG 119..260 75..237 240 34.5 Plus
tup-PB 465 CG10619-PB 18..183 34..225 230 32 Plus
tup-PC 534 CG10619-PC 18..183 34..225 230 32 Plus
tup-PA 534 CG10619-PA 18..183 34..225 230 32 Plus
Lmx1a-PB 640 CG32105-PB 234..418 34..237 225 31.2 Plus
Lmx1a-PC 639 CG32105-PC 272..417 76..237 224 34.3 Plus
CG4328-PB 544 CG4328-PB 199..315 78..214 217 32.8 Plus
Lim1-PA 505 CG11354-PA 27..150 78..224 213 33.8 Plus
Awh-PA 214 CG1072-PA 5..134 75..223 210 31.5 Plus
Awh-PD 271 CG1072-PD 5..134 75..223 210 31.5 Plus
Awh-PB 275 CG1072-PB 5..134 75..223 210 31.5 Plus
Awh-PC 287 CG1072-PC 5..134 75..223 210 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18740-PA 238 GI18740-PA 1..238 1..241 1139 88.8 Plus
Dmoj\GI15025-PA 667 GI15025-PA 167..267 76..192 272 44.4 Plus
Dmoj\GI19612-PA 485 GI19612-PA 96..293 4..226 260 33.2 Plus
Dmoj\GI17237-PA 449 GI17237-PA 37..180 73..237 239 35.3 Plus
Dmoj\GI13003-PA 607 GI13003-PA 242..387 76..237 223 34.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19153-PA 241 GL19153-PA 1..241 1..241 1153 91.7 Plus
Dper\GL18822-PA 381 GL18822-PA 186..309 77..216 278 40 Plus
Dper\GL13160-PA 399 GL13160-PA 192..315 77..216 272 39.3 Plus
Dper\GL19311-PA 399 GL19311-PA 192..315 77..216 272 39.3 Plus
Dper\GL16944-PA 469 GL16944-PA 81..275 4..223 256 33.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19074-PA 241 GA19074-PA 1..241 1..241 1153 91.7 Plus
Dpse\GA22333-PA 407 GA22333-PA 184..321 76..229 305 39 Plus
Dpse\GA25913-PA 399 GA25913-PA 192..315 77..216 278 40.7 Plus
Dpse\ap-PA 469 GA21030-PA 81..275 4..223 256 33.6 Plus
Dpse\GA10505-PA 491 GA10505-PA 94..237 73..237 235 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11938-PA 241 GM11938-PA 1..241 1..241 1284 99.6 Plus
Dsec\GM22905-PA 382 GM22905-PA 159..296 76..229 306 39 Plus
Dsec\GM16501-PA 535 GM16501-PA 147..336 4..218 255 33.5 Plus
Dsec\GM17030-PA 523 GM17030-PA 122..265 73..237 233 34.1 Plus
Dsec\GM25340-PA 637 GM25340-PA 271..417 75..237 218 34.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22293-PA 241 GD22293-PA 1..241 1..241 1284 99.6 Plus
Dsim\GD17400-PA 371 GD17400-PA 148..285 76..229 306 39 Plus
Dsim\GD10352-PA 469 GD10352-PA 81..270 4..218 254 33.5 Plus
Dsim\GD21780-PA 438 GD21780-PA 37..180 73..237 234 34.7 Plus
Dsim\GD14373-PA 642 GD14373-PA 274..420 75..237 218 34.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14918-PA 240 GJ14918-PA 1..240 1..241 1161 89.2 Plus
Dvir\apterous-PA 472 GJ14977-PA 83..280 4..226 258 32.7 Plus
Dvir\GJ17996-PA 545 GJ17996-PA 121..264 73..237 239 34.7 Plus
Dvir\GJ13148-PA 588 GJ13148-PA 222..367 76..237 219 34.3 Plus
Dvir\GJ24442-PA 529 GJ24442-PA 54..175 78..217 217 36.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17103-PA 460 GK17103-PA 123..260 76..229 310 39 Plus
Dwil\GK23121-PA 87 GK23121-PA 1..82 1..84 307 72.6 Plus
Dwil\ap-PA 469 GK10615-PA 82..276 4..223 255 33.2 Plus
Dwil\GK24239-PA 448 GK24239-PA 37..180 73..237 234 34.7 Plus
Dwil\GK23894-PA 539 GK23894-PA 38..173 69..217 218 35.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26318-PA 241 GE26318-PA 1..241 1..241 1284 99.6 Plus
Dyak\GE17735-PA 370 GE17735-PA 147..284 76..229 305 39 Plus
Dyak\GE19443-PA 469 GE19443-PA 81..270 4..218 252 33 Plus
Dyak\GE12672-PA 442 GE12672-PA 37..180 73..237 234 34.7 Plus
Dyak\GE12696-PA 540 GE12696-PA 54..175 78..217 218 36.6 Plus

LD11652.hyp Sequence

Translation from 251 to 976

> LD11652.hyp
MNATFHSYRDILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISS
SQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYWHN
GCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIP
PSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYT
MLGASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPRRSKD*

LD11652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-PC 241 CG5708-PC 1..241 1..241 1312 100 Plus
CG5708-PB 241 CG5708-PB 1..241 1..241 1312 100 Plus
CG5708-PA 241 CG5708-PA 1..241 1..241 1312 100 Plus
Bx-PC 313 CG44425-PC 52..227 29..229 335 34.8 Plus
Bx-PA 313 CG44425-PA 52..227 29..229 335 34.8 Plus