Clone LD11871 Report

Search the DGRC for LD11871

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:118
Well:71
Vector:pBS SK-
Associated Gene/Transcriptcue-RA
Protein status:LD11871.pep: gold
Preliminary Size:2551
Sequenced Size:2787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12086 2001-01-01 Release 2 assignment
CG12086 2001-10-10 Blastp of sequenced clone
CG12086 2003-01-01 Sim4 clustering to Release 3
cue 2008-04-29 Release 5.5 accounting
cue 2008-08-15 Release 5.9 accounting
cue 2008-12-18 5.12 accounting

Clone Sequence Records

LD11871.complete Sequence

2787 bp (2787 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061139

> LD11871.complete
GTCGGATCGAAAGGTCGTTAGCGTTTTCCGTGGCGCGTTCTTTGAAGCCC
CCTCCGAAAGTCCGTAAAAACAGCGCGCTGTTGTTTCCTATCCCACGTTC
GCGCAAATCCCCTTTCCGACTGGCCAGGCAACGGCAACTACGGCCAGGCG
CTTCTAATTTCCGCAACCTAACCATAAAGCCAGGCGATTGTGCAATCGCA
GGTGTCCGTTGGCTATATAATCCACCTGTAAAATGATCCGCATCCGATTT
GGAATGGATGTGCTGCTAGTTTTGCTACTTGCCACATGCCTGCTGACCCC
TGCACATGGAACGCCACTGGAGTGGGACTTTGCCGTCACGCTGAGGACGA
AGATCCAGTTCATGGACAGTTCCTGGCAGACGATAGCCACCGCCGCCCAT
GAGTTCGACGAGCTGTCCGCCCTGACCTTTGATGAGTCGGAGGAGCTGAT
CTACTTCAATGACCTGAAGCACCGCAATGGCAGCATATTCTCCCTGAAAC
GGGATCTCATTGCCGCCAACCACGTGGCGGAGCAAACGATCGCACGCACG
GGTAATGAGTCGGTGGGAGGACTAGCCTACGACCCACTGAACATGAACCT
CTTCTGGTCGGACACCGAGCAGAGAAAGATCTTCTTTGCACCCATTCACG
GCTCTGCGACGCCCCAGGTTCTGGTGGATCTGAGCGCGGAGGGTGGACGA
CCAGATGGCGTGGCAGTCGATGTGTGCCGCCGCAAGCTGTACTGGACGAA
CTCGAACGTCACGCATCCCACTGTGGAGAGGATCAATCTGGATGGCAGCA
ATAGGACCGTGATCATCAGCTCCAACATCGATATGCCCAGGGGAATCGTG
GTGGATCAGCTGTCGGATCGCCTCTTCTGGATTGACGACCTGAAGGGCGT
GTTCTTCTCGGTAGAGAGCTCCAAACTGGACGGTTCCGATCGTCAGGTGG
TGCTGAAGGACAAGCACCATGAGCCCCTCAACCTGGCCGTGACCAACGAT
GCCATCTACTGGACGGATCGTACTACCAGGGCCGTTTGGAGTCACCCGAA
AGTGCCGGTGATCAAGGTTACCACCACTAGCAAGCCAGACGAGGAGGATT
CCACTGATTCCACGGACTTCAAGGACCCCGAGCCGGTGGCCGAGGACTGT
CCGCTGGTGCGCGTTGCCAATCTTAGCGAGGAAGCGCGAGGAATTGTGGC
CCGCACCGGCTTCTACCAGAGACTGCAGAAGGACCACCATTGCGCCAGCA
TTGTGCGGAAGGTGAAGGAGCGCGTGGACGAGCAGAGCAGGAAGTTTGAA
ATACGCTCACTGCTGGACCAGAAGATAAAGGTGCTCGAAGACGAGCGTTG
CATGAACGACGGCGAGTACAGGGCTGCCACGGATCTGTGCATCTGCCCGA
CTGGCTTTAAGGGATCGCGTTGCGAGATCCGCGAGTGCCACAACTACTGC
GTCCACGGCACATGCCAGATGTCGGAGTTGGCCTACCCCAAGTGCTACTG
CCAGCCGGGATTCAAGGGCGAGCGTTGTGAGTTGAGCGTGTGCTCCGGAC
TGTGCCTCAATGGTGGTCACTGTCGGGTGTCCAAGGACGAGAACGAAGCG
CCCAGCTGTGAGTGTCCAGCCAAGTTTGGAGGAGCTCGCTGCGAGCAGAA
CTCCACGGAGATATGCTCCCTTTTCTGTCGTCTGTTGAAGCACGAGCCGG
AGATGTATGTGCCCTTCGGTTGTCACAGCATCTGTGAGGAACTGGCGCAA
GACAATAGCACCAACATTGCTATTCCGCAGTACCAGCATTTGGAGGTGTG
CCTTACGCCCAGAGTGTGGACTAGCAGCGTGATCATCATTCTCGTCGTGG
GCATCGTTTCTAGCTTGCTGCTAGTGGCTGTGATCGTTCAAGGAATCCGT
CGCCTGTACAAACCGAAGCGCCCACGCATCAGGAAGACCTTTGTGGTTCG
GAAGCAGGCCAGAACCAACTCGGCAGGAGACACTCCGCTCACCAATCGCC
CACTGGCCACCGAGCAGTGCGAGATCACGATAGAGAACTGCTGCAACATG
AACATCTGCGAAACTCCCTGTTTCGATCCCAAGCTGGTGGAGCAGACGCT
GTCCAAGTCCAGCTGCAAGGAGGACAAGAAGATACTCATCCACAACATGG
AGGATGACCTGTACTAGGGCGCGACGGACGGACGGACATCCACCTGCGCC
TCAAAACTGAACCTTGTGATAGTCGTCGTCGTCGAGTGCGGATTTGGTGT
ATTCGAGCTTGAAAAGCTGCTGCCCGCCCGGCCCTCGACCCCGTTAGCCG
CCAAGGTGCTCGCCCAGGCAACCAGCAACTAGAAACCAATTACCAACCAG
CCACAGCAATGTGCAACCAGCAACAGCAGCCTAATACTTAACACTCGCCT
GGGACACTTAACACTCGCCAAACCAAACCATTTACTTAAGCCGAAGCAAC
ATTTTTACTTAGCGATCTTCGGTCTCGTTAATTTATTCGTAGGATCATTT
TACGCCACAATTAGGATTTTAGCTAAAAGCAGCAACATTTTTGGATTCTT
AACTTCTTAATTTTTGATTCGGTTTCACTTTGAATACGTCATGTTGAAAT
GAATGCAAGTCGCGCGACTGACATTAGCTTTAAAAACGGATTACGCGGCC
GCAAGACCATTGCGATTGTGATGATTGCATCCGGATCTGTTGTAATTAAC
TCTATCAAGTGCGTCATTGTGCAAGTTCCTGTTTCGCCAAGTTGTGAAAA
AATATTCGCTACTAAAACAAAAAAAAAAAAAAAAAAA

LD11871.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
cue-RA 3077 cue-RA 60..2840 1..2781 13890 99.9 Plus
cue.a 2787 cue.a 16..2787 1..2768 13775 99.8 Plus
Psa-RB 4026 Psa-RB 1..103 103..1 515 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1503893..1505298 1731..326 6970 99.7 Minus
chr3L 24539361 chr3L 1502731..1503433 2768..2066 3500 99.9 Minus
chr3L 24539361 chr3L 1503492..1503825 2065..1732 1655 99.7 Minus
chr3L 24539361 chr3L 1516409..1516734 326..1 1630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1504388..1505793 1731..326 7030 100 Minus
3L 28110227 3L 1503213..1503928 2781..2066 3565 99.9 Minus
3L 28110227 3L 1503987..1504320 2065..1732 1670 100 Minus
3L 28110227 3L 1516913..1517238 326..1 1630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1504388..1505793 1731..326 7030 100 Minus
3L 28103327 3L 1503213..1503928 2781..2066 3565 99.8 Minus
3L 28103327 3L 1503987..1504320 2065..1732 1670 100 Minus
3L 28103327 3L 1516913..1517238 326..1 1630 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:01:57 has no hits.

LD11871.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:02:43 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1503492..1503825 1732..2065 99 <- Minus
chr3L 1502731..1503433 2066..2768 99 <- Minus
chr3L 1503893..1505297 327..1731 99 <- Minus
chr3L 1516409..1516734 1..326 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:48:06 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..1935 233..2167 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:23 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..1935 233..2167 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:45 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..1935 233..2167 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:25 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..1935 233..2167 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:05 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..1935 233..2167 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:06 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:23 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:45 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 34..2801 1..2768 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:25 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:05 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
cue-RA 34..2801 1..2768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:43 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1503226..1503928 2066..2768 100 <- Minus
3L 1503987..1504320 1732..2065 100 <- Minus
3L 1504388..1505792 327..1731 100 <- Minus
3L 1516913..1517238 1..326 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:43 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1503226..1503928 2066..2768 100 <- Minus
3L 1503987..1504320 1732..2065 100 <- Minus
3L 1504388..1505792 327..1731 100 <- Minus
3L 1516913..1517238 1..326 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:02:43 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1503226..1503928 2066..2768 100 <- Minus
3L 1503987..1504320 1732..2065 100 <- Minus
3L 1504388..1505792 327..1731 100 <- Minus
3L 1516913..1517238 1..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:45 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1503226..1503928 2066..2768 100 <- Minus
arm_3L 1503987..1504320 1732..2065 100 <- Minus
arm_3L 1504388..1505792 327..1731 100 <- Minus
arm_3L 1516913..1517238 1..326 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:29 Download gff for LD11871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1503226..1503928 2066..2768 100 <- Minus
3L 1503987..1504320 1732..2065 100 <- Minus
3L 1504388..1505792 327..1731 100 <- Minus
3L 1516913..1517238 1..326 100   Minus

LD11871.pep Sequence

Translation from 232 to 2166

> LD11871.pep
MIRIRFGMDVLLVLLLATCLLTPAHGTPLEWDFAVTLRTKIQFMDSSWQT
IATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAE
QTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDL
SAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNID
MPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPLN
LAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPE
PVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDE
QSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIR
ECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRVS
KDENEAPSCECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSI
CEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSLLLVAV
IVQGIRRLYKPKRPRIRKTFVVRKQARTNSAGDTPLTNRPLATEQCEITI
ENCCNMNICETPCFDPKLVEQTLSKSSCKEDKKILIHNMEDDLY*

LD11871.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25031-PA 643 GF25031-PA 5..643 10..644 2713 79.7 Plus
Dana\GF11183-PA 1674 GF11183-PA 438..630 63..268 262 30.6 Plus
Dana\GF20503-PA 876 GF20503-PA 471..666 77..274 249 30.5 Plus
Dana\GF18235-PA 1068 GF18235-PA 656..878 60..273 224 27.4 Plus
Dana\GF18234-PA 1036 GF18234-PA 570..792 60..273 221 27.4 Plus
Dana\GF11183-PA 1674 GF11183-PA 745..932 63..265 202 29.6 Plus
Dana\GF11183-PA 1674 GF11183-PA 111..317 51..262 199 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14595-PA 644 GG14595-PA 1..644 1..644 3149 92.7 Plus
Dere\GG22489-PA 1681 GG22489-PA 441..633 63..268 260 30.6 Plus
Dere\GG17929-PA 2009 GG17929-PA 645..840 77..274 237 29.1 Plus
Dere\GG23343-PA 4647 GG23343-PA 2242..2443 63..268 233 29.5 Plus
Dere\GG12224-PA 1079 GG12224-PA 664..892 60..279 232 28.4 Plus
Dere\GG17929-PA 2009 GG17929-PA 1569..1765 64..274 222 29.7 Plus
Dere\GG17929-PA 2009 GG17929-PA 1261..1451 63..268 218 30 Plus
Dere\GG23343-PA 4647 GG23343-PA 1298..1517 61..280 211 27.8 Plus
Dere\GG22489-PA 1681 GG22489-PA 748..935 63..265 204 30 Plus
Dere\GG22489-PA 1681 GG22489-PA 164..320 100..262 193 29.5 Plus
Dere\GG17929-PA 2009 GG17929-PA 957..1153 63..274 193 26 Plus
Dere\GG23343-PA 4647 GG23343-PA 4281..4382 373..473 183 40 Plus
Dere\GG23343-PA 4647 GG23343-PA 4262..4354 386..483 168 39.6 Plus
Dere\GG23343-PA 4647 GG23343-PA 1892..2117 33..262 163 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15203-PA 605 GH15203-PA 14..603 32..643 1807 56.3 Plus
Dgri\GH23152-PA 1679 GH23152-PA 437..629 63..268 260 29.6 Plus
Dgri\GH12853-PA 2095 GH12853-PA 737..932 77..274 244 29.6 Plus
Dgri\GH12853-PA 2095 GH12853-PA 1659..1856 64..275 233 28.8 Plus
Dgri\GH17685-PA 1879 GH17685-PA 349..552 51..268 232 29.4 Plus
Dgri\GH21081-PA 4620 GH21081-PA 2229..2430 63..268 225 26.8 Plus
Dgri\GH21081-PA 4620 GH21081-PA 1281..1502 61..282 217 28.3 Plus
Dgri\GH12853-PA 2095 GH12853-PA 1353..1543 63..268 214 28 Plus
Dgri\GH23152-PA 1679 GH23152-PA 118..329 57..281 208 26.9 Plus
Dgri\GH21081-PA 4620 GH21081-PA 3042..3248 56..268 208 27.9 Plus
Dgri\GH23152-PA 1679 GH23152-PA 744..931 63..265 195 29.1 Plus
Dgri\GH12853-PA 2095 GH12853-PA 1049..1252 63..281 192 25.1 Plus
Dgri\GH21081-PA 4620 GH21081-PA 4271..4356 386..473 184 40.4 Plus
Dgri\GH21081-PA 4620 GH21081-PA 1913..2122 62..284 177 24.2 Plus
Dgri\GH21081-PA 4620 GH21081-PA 603..763 106..269 176 27.5 Plus
Dgri\GH21081-PA 4620 GH21081-PA 3021..3195 85..262 166 26.7 Plus
Dgri\GH21081-PA 4620 GH21081-PA 3854..4215 118..476 164 23.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
cue-PA 644 CG12086-PA 1..644 1..644 3429 100 Plus
arr-PA 1678 CG5912-PA 438..630 63..268 254 30.6 Plus
Lrp4-PC 2008 CG8909-PC 645..840 77..274 237 29.1 Plus
Lrp4-PD 2008 CG8909-PD 645..840 77..274 237 29.1 Plus
Lrp4-PB 2009 CG8909-PB 645..840 77..274 237 29.1 Plus
LRP1-PG 4730 CG33087-PG 2321..2522 63..268 219 28.6 Plus
LRP1-PF 4752 CG33087-PF 2347..2548 63..268 219 28.6 Plus
Lrp4-PC 2008 CG8909-PC 1569..1765 64..274 217 28.9 Plus
Lrp4-PD 2008 CG8909-PD 1569..1765 64..274 217 28.9 Plus
Lrp4-PB 2009 CG8909-PB 1569..1765 64..274 217 28.9 Plus
Lrp4-PC 2008 CG8909-PC 1261..1451 63..268 212 30 Plus
Lrp4-PD 2008 CG8909-PD 1261..1451 63..268 212 30 Plus
Lrp4-PB 2009 CG8909-PB 1261..1451 63..268 212 30 Plus
LpR2-PB 826 CG31092-PB 416..638 60..273 212 28.3 Plus
LpR2-PI 834 CG31092-PI 417..639 60..273 212 28.3 Plus
LpR2-PF 861 CG31092-PF 416..638 60..273 212 28.3 Plus
LpR2-PH 862 CG31092-PH 417..639 60..273 212 28.3 Plus
LpR2-PA 1028 CG31092-PA 618..840 60..273 212 28.3 Plus
LpR2-PC 1029 CG31092-PC 619..841 60..273 212 28.3 Plus
LpR2-PG 1063 CG31092-PG 618..840 60..273 212 28.3 Plus
LpR2-PE 1064 CG31092-PE 619..841 60..273 212 28.3 Plus
LpR1-PD 830 CG31094-PD 419..641 60..273 210 28.3 Plus
LpR1-PR 868 CG31094-PR 457..679 60..273 210 28.3 Plus
LpR1-PS 887 CG31094-PS 417..639 60..273 210 28.3 Plus
LpR1-PG 889 CG31094-PG 419..641 60..273 210 28.3 Plus
LpR1-PQ 976 CG31094-PQ 565..787 60..273 210 28.3 Plus
LpR1-PP 976 CG31094-PP 565..787 60..273 210 28.3 Plus
LpR1-PL 978 CG31094-PL 567..789 60..273 210 28.3 Plus
LpR1-PJ 996 CG31094-PJ 526..748 60..273 210 28.3 Plus
LpR1-PH 1037 CG31094-PH 567..789 60..273 210 28.3 Plus
LpR1-PK 1076 CG31094-PK 606..828 60..273 210 28.3 Plus
LRP1-PG 4730 CG33087-PG 1408..1595 101..285 209 29.7 Plus
LRP1-PF 4752 CG33087-PF 1434..1621 101..285 209 29.7 Plus
mgl-PE 4769 CG42611-PE 1623..1792 101..273 206 32.8 Plus
mgl-PD 4769 CG42611-PD 1623..1792 101..273 206 32.8 Plus
mgl-PC 4769 CG42611-PC 1623..1792 101..273 206 32.8 Plus
mgl-PA 4769 CG42611-PA 1623..1792 101..273 206 32.8 Plus
LRP1-PG 4730 CG33087-PG 4360..4461 373..473 202 39 Plus
LRP1-PF 4752 CG33087-PF 4386..4487 373..473 202 39 Plus
yl-PA 1937 CG1372-PA 427..626 55..268 202 27.6 Plus
yl-PB 1984 CG1372-PB 427..626 55..268 202 27.6 Plus
Lrp4-PC 2008 CG8909-PC 957..1170 63..298 198 25.9 Plus
Lrp4-PD 2008 CG8909-PD 957..1170 63..298 198 25.9 Plus
Lrp4-PB 2009 CG8909-PB 957..1170 63..298 198 25.9 Plus
arr-PA 1678 CG5912-PA 161..317 100..262 196 29.5 Plus
arr-PA 1678 CG5912-PA 720..932 38..265 193 26.8 Plus
LRP1-PG 4730 CG33087-PG 4324..4433 372..483 192 36.8 Plus
LRP1-PF 4752 CG33087-PF 4350..4459 372..483 192 36.8 Plus
LRP1-PG 4730 CG33087-PG 3958..4360 118..478 185 21.7 Plus
LRP1-PF 4752 CG33087-PF 3984..4386 118..478 185 21.7 Plus
mgl-PE 4769 CG42611-PE 2595..2748 113..273 179 27 Plus
mgl-PD 4769 CG42611-PD 2595..2748 113..273 179 27 Plus
mgl-PC 4769 CG42611-PC 2595..2748 113..273 179 27 Plus
mgl-PA 4769 CG42611-PA 2595..2748 113..273 179 27 Plus
mgl-PE 4769 CG42611-PE 2232..2468 70..313 177 23.7 Plus
mgl-PD 4769 CG42611-PD 2232..2468 70..313 177 23.7 Plus
mgl-PC 4769 CG42611-PC 2232..2468 70..313 177 23.7 Plus
mgl-PA 4769 CG42611-PA 2232..2468 70..313 177 23.7 Plus
Ndg-PC 1350 CG12908-PC 1112..1269 106..268 177 27.3 Plus
Ndg-PA 1350 CG12908-PA 1112..1269 106..268 177 27.3 Plus
mgl-PE 4769 CG42611-PE 4226..4574 97..474 171 22.5 Plus
mgl-PD 4769 CG42611-PD 4226..4574 97..474 171 22.5 Plus
mgl-PC 4769 CG42611-PC 4226..4574 97..474 171 22.5 Plus
mgl-PA 4769 CG42611-PA 4226..4574 97..474 171 22.5 Plus
LRP1-PG 4730 CG33087-PG 3146..3352 56..268 166 25.1 Plus
LRP1-PF 4752 CG33087-PF 3172..3378 56..268 166 25.1 Plus
N-PB 2703 CG3936-PB 635..762 360..482 164 33.6 Plus
N-PA 2703 CG3936-PA 635..762 360..482 164 33.6 Plus
N-PB 2703 CG3936-PB 762..877 373..483 163 33.6 Plus
N-PA 2703 CG3936-PA 762..877 373..483 163 33.6 Plus
LRP1-PG 4730 CG33087-PG 1971..2196 33..262 162 24.7 Plus
LRP1-PF 4752 CG33087-PF 1997..2222 33..262 162 24.7 Plus
N-PB 2703 CG3936-PB 465..574 373..483 162 37.3 Plus
N-PA 2703 CG3936-PA 465..574 373..483 162 37.3 Plus
wry-PC 1154 CG31665-PC 788..890 373..471 162 39.3 Plus
wry-PD 1155 CG31665-PD 789..891 373..471 162 39.3 Plus
wry-PB 1157 CG31665-PB 788..890 373..471 162 39.3 Plus
crb-PA 2146 CG6383-PA 1765..1868 373..471 161 38 Plus
crb-PB 2189 CG6383-PB 1808..1911 373..471 161 38 Plus
crb-PD 2203 CG6383-PD 1822..1925 373..471 161 38 Plus
crb-PC 2253 CG6383-PC 1872..1975 373..471 161 38 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16721-PA 634 GI16721-PA 10..632 10..643 1914 58.1 Plus
Dmoj\GI21337-PA 1656 GI21337-PA 431..608 113..268 240 31 Plus
Dmoj\GI14944-PA 2119 GI14944-PA 779..954 92..274 235 29.5 Plus
Dmoj\GI21507-PA 1968 GI21507-PA 398..601 51..268 229 28.4 Plus
Dmoj\GI14944-PA 2119 GI14944-PA 1375..1565 63..268 219 28 Plus
Dmoj\GI14944-PA 2119 GI14944-PA 1724..1878 113..275 219 32.5 Plus
Dmoj\GI10346-PA 1017 GI10346-PA 559..781 60..273 215 26.1 Plus
Dmoj\GI21337-PA 1656 GI21337-PA 152..310 98..262 203 30.4 Plus
Dmoj\GI14944-PA 2119 GI14944-PA 1071..1274 63..281 195 25.1 Plus
Dmoj\GI21337-PA 1656 GI21337-PA 723..910 63..265 188 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22490-PA 632 GL22490-PA 11..632 13..644 2572 74.3 Plus
Dper\GL17073-PA 1760 GL17073-PA 445..637 63..268 268 30.6 Plus
Dper\GL14843-PA 1512 GL14843-PA 274..517 11..268 244 27.9 Plus
Dper\GL16648-PA 816 GL16648-PA 410..607 63..274 243 28.3 Plus
Dper\GL11210-PA 4617 GL11210-PA 2237..2438 63..268 229 30 Plus
Dper\GL11210-PA 4617 GL11210-PA 1261..1512 36..285 221 27.4 Plus
Dper\GL11210-PA 4617 GL11210-PA 3044..3250 56..268 215 28.3 Plus
Dper\GL17073-PA 1760 GL17073-PA 160..324 92..262 206 30.6 Plus
Dper\GL17073-PA 1760 GL17073-PA 752..939 63..265 204 30 Plus
Dper\GL11210-PA 4617 GL11210-PA 615..774 107..269 178 27.5 Plus
Dper\GL11210-PA 4617 GL11210-PA 4250..4351 373..473 173 38.1 Plus
Dper\GL11210-PA 4617 GL11210-PA 1921..2112 62..262 166 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11386-PA 647 GA11386-PA 11..647 13..644 2650 76 Plus
Dpse\GA19223-PA 1687 GA19223-PA 446..638 63..268 267 30.6 Plus
Dpse\GA27992-PA 864 GA27992-PA 451..648 63..274 242 27.8 Plus
Dpse\GA12483-PA 1994 GA12483-PA 401..637 18..268 236 27.5 Plus
Dpse\GA27443-PC 822 GA27443-PC 416..638 60..273 219 26.5 Plus
Dpse\GA19223-PA 1687 GA19223-PA 161..325 92..262 206 31.2 Plus
Dpse\GA19223-PA 1687 GA19223-PA 753..940 63..265 204 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14208-PA 644 GM14208-PA 1..644 1..644 3375 97 Plus
Dsec\GM20276-PA 1678 GM20276-PA 438..630 63..268 259 30.6 Plus
Dsec\GM22597-PA 1980 GM22597-PA 645..840 77..274 237 29.1 Plus
Dsec\GM10225-PA 1071 GM10225-PA 661..889 60..279 236 28.4 Plus
Dsec\GM21016-PA 4717 GM21016-PA 2300..2501 63..268 231 29.1 Plus
Dsec\GM22597-PA 1980 GM22597-PA 1540..1736 64..274 222 29.7 Plus
Dsec\GM21016-PA 4717 GM21016-PA 1351..1572 61..282 215 28 Plus
Dsec\GM20276-PA 1678 GM20276-PA 745..932 63..265 204 30 Plus
Dsec\GM20276-PA 1678 GM20276-PA 161..317 100..262 193 29.5 Plus
Dsec\GM22597-PA 1980 GM22597-PA 957..1153 63..274 193 26 Plus
Dsec\GM21016-PA 4717 GM21016-PA 4339..4440 373..473 176 39 Plus
Dsec\GM22597-PA 1980 GM22597-PA 1261..1439 63..255 173 27.8 Plus
Dsec\GM21016-PA 4717 GM21016-PA 1950..2175 33..262 171 24.7 Plus
Dsec\GM21016-PA 4717 GM21016-PA 3937..4360 118..496 170 23.9 Plus
Dsec\GM21016-PA 4717 GM21016-PA 4320..4412 386..483 167 39 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13471-PA 644 GD13471-PA 1..644 1..644 3390 97.5 Plus
Dsim\GD25759-PA 1274 GD25759-PA 34..226 63..268 259 30.6 Plus
Dsim\GD17251-PA 1704 GD17251-PA 650..845 77..274 238 29.1 Plus
Dsim\GD18176-PA 626 GD18176-PA 216..444 60..279 236 28.4 Plus
Dsim\GD18174-PA 883 GD18174-PA 419..641 60..273 225 28.3 Plus
Dsim\GD17251-PA 1704 GD17251-PA 1266..1456 63..268 219 30 Plus
Dsim\GD25759-PA 1274 GD25759-PA 341..528 63..265 204 30 Plus
Dsim\GD17251-PA 1704 GD17251-PA 962..1158 63..274 194 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12465-PA 636 GJ12465-PA 8..634 5..643 1967 59.5 Plus
Dvir\GJ19682-PA 1671 GJ19682-PA 431..623 63..268 265 30.1 Plus
Dvir\GJ18973-PA 1276 GJ18973-PA 679..876 63..274 240 28.3 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 1278..1499 61..282 224 28.4 Plus
Dvir\GJ10197-PA 1071 GJ10197-PA 609..831 60..273 217 26.1 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 2226..2427 63..268 215 26.2 Plus
Dvir\GJ19682-PA 1671 GJ19682-PA 154..310 100..262 206 30.9 Plus
Dvir\GJ18973-PA 1276 GJ18973-PA 993..1196 63..281 195 25.1 Plus
Dvir\GJ19682-PA 1671 GJ19682-PA 738..925 63..265 194 28.6 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 600..774 106..283 193 27.6 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 3046..3240 63..269 184 27.1 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 4253..4365 373..482 183 37.1 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 1876..2103 33..264 180 24.4 Plus
Dvir\GJ21697-PA 4618 GJ21697-PA 3851..4208 118..471 157 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17203-PA 651 GK17203-PA 3..651 8..644 2063 60.1 Plus
Dwil\GK15922-PA 1692 GK15922-PA 452..644 63..268 264 31.1 Plus
Dwil\GK17732-PA 2014 GK17732-PA 655..852 63..274 239 27.8 Plus
Dwil\GK15819-PA 4637 GK15819-PA 2244..2445 63..268 224 27.6 Plus
Dwil\GK17732-PA 2014 GK17732-PA 1580..1782 77..281 220 28.4 Plus
Dwil\GK17732-PA 2014 GK17732-PA 1273..1463 63..268 220 28.5 Plus
Dwil\GK15819-PA 4637 GK15819-PA 1268..1519 36..285 219 27 Plus
Dwil\GK14390-PA 1102 GK14390-PA 690..912 60..273 209 26.1 Plus
Dwil\GK15922-PA 1692 GK15922-PA 759..946 63..265 202 30.5 Plus
Dwil\GK15922-PA 1692 GK15922-PA 175..331 100..262 198 31.9 Plus
Dwil\GK15819-PA 4637 GK15819-PA 3061..3260 63..268 198 27.8 Plus
Dwil\GK17732-PA 2014 GK17732-PA 969..1172 63..281 192 24.2 Plus
Dwil\GK15819-PA 4637 GK15819-PA 4285..4370 386..473 185 40.4 Plus
Dwil\GK15819-PA 4637 GK15819-PA 1894..2119 33..262 175 23 Plus
Dwil\GK15819-PA 4637 GK15819-PA 610..790 102..282 173 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20954-PA 644 GE20954-PA 1..644 1..644 3204 94.7 Plus
Dyak\GE13360-PA 1666 GE13360-PA 441..633 63..268 258 30.6 Plus
Dyak\GE17236-PA 2009 GE17236-PA 645..840 77..274 239 30 Plus
Dyak\GE19184-PA 4693 GE19184-PA 2288..2489 63..268 237 28.2 Plus
Dyak\GE10672-PA 1060 GE10672-PA 648..870 60..273 236 29.1 Plus
Dyak\GE17236-PA 2009 GE17236-PA 1569..1766 64..275 232 30 Plus
Dyak\GE17236-PA 2009 GE17236-PA 1261..1451 63..268 218 30 Plus
Dyak\GE19184-PA 4693 GE19184-PA 1339..1562 61..285 215 28.5 Plus
Dyak\GE13360-PA 1666 GE13360-PA 748..935 63..265 203 30 Plus
Dyak\GE13360-PA 1666 GE13360-PA 164..320 100..262 193 29.5 Plus
Dyak\GE17236-PA 2009 GE17236-PA 957..1153 63..274 193 26 Plus
Dyak\GE19184-PA 4693 GE19184-PA 4312..4428 358..473 183 35 Plus
Dyak\GE19184-PA 4693 GE19184-PA 3925..4348 118..496 166 23.7 Plus
Dyak\GE19184-PA 4693 GE19184-PA 4308..4400 386..483 164 39 Plus
Dyak\GE19184-PA 4693 GE19184-PA 1938..2163 33..262 163 24.3 Plus

LD11871.hyp Sequence

Translation from 232 to 2166

> LD11871.hyp
MIRIRFGMDVLLVLLLATCLLTPAHGTPLEWDFAVTLRTKIQFMDSSWQT
IATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAE
QTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDL
SAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNID
MPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPLN
LAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPE
PVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDE
QSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIR
ECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRVS
KDENEAPSCECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSI
CEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSLLLVAV
IVQGIRRLYKPKRPRIRKTFVVRKQARTNSAGDTPLTNRPLATEQCEITI
ENCCNMNICETPCFDPKLVEQTLSKSSCKEDKKILIHNMEDDLY*

LD11871.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
cue-PA 644 CG12086-PA 1..644 1..644 3429 100 Plus
arr-PA 1678 CG5912-PA 438..630 63..268 254 30.6 Plus
CG8909-PC 2008 CG8909-PC 645..840 77..274 237 29.1 Plus
CG8909-PD 2008 CG8909-PD 645..840 77..274 237 29.1 Plus
CG8909-PB 2009 CG8909-PB 645..840 77..274 237 29.1 Plus
CG8909-PC 2008 CG8909-PC 1569..1765 64..274 217 28.9 Plus
CG8909-PD 2008 CG8909-PD 1569..1765 64..274 217 28.9 Plus
CG8909-PC 2008 CG8909-PC 1261..1451 63..268 212 30 Plus
CG8909-PD 2008 CG8909-PD 1261..1451 63..268 212 30 Plus
CG8909-PC 2008 CG8909-PC 957..1170 63..298 198 25.9 Plus
CG8909-PD 2008 CG8909-PD 957..1170 63..298 198 25.9 Plus
arr-PA 1678 CG5912-PA 161..317 100..262 196 29.5 Plus
arr-PA 1678 CG5912-PA 720..932 38..265 193 26.8 Plus