Clone LD11952 Report

Search the DGRC for LD11952

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:119
Well:52
Vector:pBS SK-
Associated Gene/TranscriptCG7675-RB
Protein status:LD11952.pep: gold
Sequenced Size:1270

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7675-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

LD11952.complete Sequence

1270 bp assembled on 2009-10-20

GenBank Submission: BT100136.1

> LD11952.complete
TAGCTCTTGGATCCACCAATTCCATTTCGCAGCGCAGATATAGTCCAAAG
TGCAGGTCAGCAGAAGTTGGAATAAATTATAGATCAGCCAACAGCCAAAA
CAGGATGGGTTTCATCTTCGGTTGGCTGTCGACCGAGCACTATGTGCGCG
ACATCTTCCTCATGACTTCAGTGGCCGCCATAGTGGCCACCCTGATGAGC
ATTCGGTTCTATCTGCGCATCACGGCGGGACGATGTTTCACCGAGACAAA
GATGGAGGGCAAGACAGTCATTATCACAGGCGCCAACAGCGGAATTGGCA
AGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCCCGCATCATCATGGCC
TGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGATGAGATCGTCAAGGA
GACGAAGAACAACAAGATCCTAGTCAAGAAACTGGATCTGGGCTCCCAGA
AGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAGACCGAGCCCAAGATC
GATGTGCTTATCCACAATGCCGGCATGGCTCTGGCCTTCCGCGGACAGAC
GAGTGAGGATGGCGTGGAGCTGACCATGGCCACCAATCACTATGGACCCT
TCCTGCTGACGCATCTGCTCATCGATGTACTAAAGAAGAGCGCGCCGGCT
CGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCTGTCGTCGGTTAACCT
GGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTGCCTACTTATACTATG
TGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAGCTGGCCAAGCGGCTG
GAGGGCACCAAGGTTACAGTGAATTTCCTGCATCCCGGCATGATCGACTC
GGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACTTGCCCATGATGGCCA
TCACCAAGGGATTCTTCAAGACCACCAAGGCCGGCGCCCAGACCACTATC
TATTTGGCCACATCCAATGAGGTGGCCAATGTGTCTGGAAAGTACTTCAT
GGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCCTCGATGAGGAGAAGG
GTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTCAAGCTTACGCCCCAG
GATCCCAAAATCTAGACGGGTGTCTGCGGCTGAGAGCCAACGCACAATTT
ACTGATTTACTTTTCTTGTTTTTAAGGGGGAGTTTACTGTAGCCTAAGTT
TTCTCAATAAAAATGATTTTGTATAATTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD11952.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-RB 1281 CG7675-RB 42..1272 1..1231 6155 100 Plus
CG7675-RA 1131 CG7675-RA 143..1130 244..1231 4940 100 Plus
CG7675-RC 1083 CG7675-RC 95..1082 244..1231 4940 100 Plus
CG7675-RA 1131 CG7675-RA 42..144 1..103 515 100 Plus
CG7675-RC 1083 CG7675-RC 42..96 1..55 275 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14202315..14203159 1228..384 4150 99.4 Minus
chr3R 27901430 chr3R 14204403..14204546 245..102 720 100 Minus
chr3R 27901430 chr3R 14203417..14203557 384..244 705 100 Minus
chr3R 27901430 chr3R 14205221..14205324 104..1 520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18378121..18378968 1231..384 4240 100 Minus
3R 32079331 3R 18380213..18380356 245..102 720 100 Minus
3R 32079331 3R 18379226..18379366 384..244 705 100 Minus
3R 32079331 3R 18381031..18381134 104..1 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18118952..18119799 1231..384 4240 100 Minus
3R 31820162 3R 18121044..18121187 245..102 720 100 Minus
3R 31820162 3R 18120057..18120197 384..244 705 100 Minus
3R 31820162 3R 18121862..18121965 104..1 520 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:43:08 has no hits.

LD11952.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:44:03 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14202315..14203158 385..1228 99 <- Minus
chr3R 14203417..14203555 246..384 100 <- Minus
chr3R 14204403..14204544 104..245 100 <- Minus
chr3R 14205222..14205324 1..103 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-20 10:40:50 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 1..1011 105..1115 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:46:11 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 1..1011 105..1115 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:35 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 1..1011 105..1115 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:18 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 1..1011 105..1115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:40:49 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 42..1269 1..1228 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:46:11 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 42..1269 1..1228 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:35 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 42..1269 1..1228 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:18 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RB 45..1272 1..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:03 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18378124..18378967 385..1228 100 <- Minus
3R 18379226..18379364 246..384 100 <- Minus
3R 18380213..18380354 104..245 100 <- Minus
3R 18381032..18381134 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:03 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18378124..18378967 385..1228 100 <- Minus
3R 18379226..18379364 246..384 100 <- Minus
3R 18380213..18380354 104..245 100 <- Minus
3R 18381032..18381134 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:44:03 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18378124..18378967 385..1228 100 <- Minus
3R 18379226..18379364 246..384 100 <- Minus
3R 18380213..18380354 104..245 100 <- Minus
3R 18381032..18381134 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:35 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14203846..14204689 385..1228 100 <- Minus
arm_3R 14204948..14205086 246..384 100 <- Minus
arm_3R 14205935..14206076 104..245 100 <- Minus
arm_3R 14206754..14206856 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:26:19 Download gff for LD11952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18118955..18119798 385..1228 100 <- Minus
3R 18120057..18120195 246..384 100 <- Minus
3R 18121044..18121185 104..245 100 <- Minus
3R 18121863..18121965 1..103 100   Minus

LD11952.hyp Sequence

Translation from 2 to 1114

> LD11952.hyp
ALGSTNSISQRRYSPKCRSAEVGINYRSANSQNRMGFIFGWLSTEHYVRD
IFLMTSVAAIVATLMSIRFYLRITAGRCFTETKMEGKTVIITGANSGIGK
ETAKDLAGRGARIIMACRNLETANAVKDEIVKETKNNKILVKKLDLGSQK
SVREFAADIVKTEPKIDVLIHNAGMALAFRGQTSEDGVELTMATNHYGPF
LLTHLLIDVLKKSAPARIVIVASELYRLSSVNLAKLNPIGTFPAAYLYYV
SKFANIYFARELAKRLEGTKVTVNFLHPGMIDSGIWRNVPFPLNLPMMAI
TKGFFKTTKAGAQTTIYLATSNEVANVSGKYFMDCKEATLNAAALDEEKG
LKIWEESVKIVKLTPQDPKI*

LD11952.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-PD 336 CG7675-PD 1..336 35..370 1700 100 Plus
CG7675-PB 336 CG7675-PB 1..336 35..370 1700 100 Plus
CG7675-PE 287 CG7675-PE 1..287 84..370 1448 100 Plus
CG7675-PC 287 CG7675-PC 1..287 84..370 1448 100 Plus
CG7675-PA 287 CG7675-PA 1..287 84..370 1448 100 Plus

LD11952.pep Sequence

Translation from 2 to 1114

> LD11952.pep
ALGSTNSISQRRYSPKCRSAEVGINYRSANSQNRMGFIFGWLSTEHYVRD
IFLMTSVAAIVATLMSIRFYLRITAGRCFTETKMEGKTVIITGANSGIGK
ETAKDLAGRGARIIMACRNLETANAVKDEIVKETKNNKILVKKLDLGSQK
SVREFAADIVKTEPKIDVLIHNAGMALAFRGQTSEDGVELTMATNHYGPF
LLTHLLIDVLKKSAPARIVIVASELYRLSSVNLAKLNPIGTFPAAYLYYV
SKFANIYFARELAKRLEGTKVTVNFLHPGMIDSGIWRNVPFPLNLPMMAI
TKGFFKTTKAGAQTTIYLATSNEVANVSGKYFMDCKEATLNAAALDEEKG
LKIWEESVKIVKLTPQDPKI*

LD11952.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18115-PA 336 GF18115-PA 1..336 35..370 1700 94 Plus
Dana\GF13188-PA 331 GF13188-PA 10..331 49..369 625 43.4 Plus
Dana\GF13190-PA 328 GF13190-PA 6..326 50..366 575 41.4 Plus
Dana\GF13193-PA 327 GF13193-PA 22..323 66..363 574 45.9 Plus
Dana\GF13192-PA 293 GF13192-PA 7..287 79..359 567 46.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16476-PA 336 GG16476-PA 1..336 35..370 1771 99.1 Plus
Dere\GG23292-PA 296 GG23292-PA 1..290 73..359 573 41.9 Plus
Dere\GG23291-PA 331 GG23291-PA 16..324 59..362 573 42.6 Plus
Dere\GG23294-PA 329 GG23294-PA 24..329 69..369 568 42.4 Plus
Dere\GG23293-PA 327 GG23293-PA 7..321 52..359 564 41.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19227-PA 336 GH19227-PA 1..336 35..370 1640 90.5 Plus
Dgri\GH21883-PA 573 GH21883-PA 276..565 73..359 579 45 Plus
Dgri\GH21880-PA 325 GH21880-PA 6..319 50..359 562 43.2 Plus
Dgri\GH21876-PA 334 GH21876-PA 13..324 69..362 555 40.3 Plus
Dgri\GH21882-PA 325 GH21882-PA 6..319 50..359 548 42.5 Plus
Dgri\GH21883-PA 573 GH21883-PA 49..332 73..347 474 41.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-PD 336 CG7675-PD 1..336 35..370 1700 100 Plus
CG7675-PB 336 CG7675-PB 1..336 35..370 1700 100 Plus
CG7675-PE 287 CG7675-PE 1..287 84..370 1448 100 Plus
CG7675-PC 287 CG7675-PC 1..287 84..370 1448 100 Plus
CG7675-PA 287 CG7675-PA 1..287 84..370 1448 100 Plus
CG2064-PA 330 CG2064-PA 33..319 76..359 602 45.1 Plus
CG30491-PB 331 CG30491-PB 16..326 59..364 599 42.3 Plus
CG30491-PA 331 CG30491-PA 16..326 59..364 599 42.3 Plus
CG2065-PB 300 CG2065-PB 4..290 76..359 589 44.4 Plus
CG2065-PA 300 CG2065-PA 4..290 76..359 589 44.4 Plus
CG2070-PB 325 CG2070-PB 16..319 62..359 585 42 Plus
CG2070-PA 325 CG2070-PA 16..319 62..359 585 42 Plus
CG30495-PA 327 CG30495-PA 11..325 48..363 574 40.6 Plus
CG30495-PB 331 CG30495-PB 11..329 48..363 571 39.8 Plus
CG3842-PD 406 CG3842-PD 71..358 83..368 480 39.7 Plus
CG3842-PC 406 CG3842-PC 71..358 83..368 480 39.7 Plus
CG3842-PB 406 CG3842-PB 71..358 83..368 480 39.7 Plus
CG3842-PA 406 CG3842-PA 71..358 83..368 480 39.7 Plus
CG31235-PB 406 CG31235-PB 20..356 55..364 423 33.9 Plus
CG31235-PA 406 CG31235-PA 20..356 55..364 423 33.9 Plus
Wwox-PB 409 CG7221-PB 119..374 84..335 348 36.8 Plus
Wwox-PA 409 CG7221-PA 119..374 84..335 348 36.8 Plus
CG11200-PC 355 CG11200-PC 64..347 83..363 291 29.2 Plus
CG11200-PA 355 CG11200-PA 64..347 83..363 291 29.2 Plus
CG11200-PB 355 CG11200-PB 64..347 83..363 291 29.2 Plus
CG12171-PA 257 CG12171-PA 7..194 87..287 197 31.7 Plus
CG31548-PA 256 CG31548-PA 5..186 86..280 181 30.6 Plus
CG7601-PA 326 CG7601-PA 22..239 53..281 178 25.4 Plus
CG3603-PB 249 CG3603-PB 6..249 84..352 165 26.3 Plus
CG3603-PA 249 CG3603-PA 6..249 84..352 165 26.3 Plus
CG3699-PA 251 CG3699-PA 3..190 84..289 163 30.8 Plus
CG31549-PB 257 CG31549-PB 2..192 82..285 158 28.3 Plus
CG31549-PA 257 CG31549-PA 2..192 82..285 158 28.3 Plus
antdh-PA 250 CG1386-PA 3..203 83..285 152 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24262-PA 336 GI24262-PA 1..336 35..370 1661 91.4 Plus
Dmoj\GI20381-PA 417 GI20381-PA 105..410 61..360 569 42.9 Plus
Dmoj\GI15186-PA 397 GI15186-PA 66..350 83..365 504 41.6 Plus
Dmoj\GI24267-PA 373 GI24267-PA 20..355 55..364 379 32.5 Plus
Dmoj\GI16896-PA 408 GI16896-PA 119..400 84..361 356 32.4 Plus
Dmoj\GI20381-PA 417 GI20381-PA 13..116 69..157 198 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23193-PA 336 GL23193-PA 1..336 35..370 1635 93.8 Plus
Dper\GL11532-PA 327 GL11532-PA 6..323 50..363 545 42.1 Plus
Dper\GL20020-PA 332 GL20020-PA 1..331 35..369 519 38.1 Plus
Dper\GL20021-PA 296 GL20021-PA 14..290 86..359 518 42.4 Plus
Dper\GL23200-PA 408 GL23200-PA 20..355 55..364 377 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20517-PA 239 GA20517-PA 1..239 35..273 1131 93.3 Plus
Dpse\GA20517-PB 190 GA20517-PB 1..190 84..273 894 94.7 Plus
Dpse\GA15218-PA 327 GA15218-PA 6..323 50..363 540 41.7 Plus
Dpse\GA15878-PA 332 GA15878-PA 1..331 35..369 524 38.3 Plus
Dpse\GA15882-PB 324 GA15882-PB 18..318 60..359 522 40.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18707-PA 183 GM18707-PA 1..120 35..154 604 96.7 Plus
Dsec\GM20968-PA 331 GM20968-PA 16..326 59..364 569 42 Plus
Dsec\GM20972-PA 330 GM20972-PA 24..323 69..363 567 43.2 Plus
Dsec\GM20971-PA 300 GM20971-PA 1..290 73..359 561 44.2 Plus
Dsec\GM20970-PA 325 GM20970-PA 26..319 67..359 559 42.4 Plus
Dsec\GM18707-PA 183 GM18707-PA 139..183 326..370 242 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20174-PA 336 GD20174-PA 1..336 35..370 1771 99.1 Plus
Dsim\GD10497-PA 331 GD10497-PA 16..326 59..364 569 42 Plus
Dsim\GD10500-PA 329 GD10500-PA 24..319 69..359 557 44.3 Plus
Dsim\GD10499-PA 325 GD10499-PA 26..319 67..359 556 42.3 Plus
Dsim\GD10498-PA 327 GD10498-PA 14..325 51..363 520 41 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10835-PA 336 GJ10835-PA 1..336 35..370 1675 92.3 Plus
Dvir\GJ22106-PA 327 GJ22106-PA 21..327 65..367 577 44.2 Plus
Dvir\GJ22105-PA 333 GJ22105-PA 10..321 49..359 551 41.6 Plus
Dvir\GJ22107-PA 327 GJ22107-PA 7..319 52..359 543 43 Plus
Dvir\GJ17066-PA 358 GJ17066-PA 22..344 48..365 505 39.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11493-PA 336 GK11493-PA 1..336 35..370 1621 92.9 Plus
Dwil\GK18001-PA 325 GK18001-PA 6..319 50..359 586 44.4 Plus
Dwil\GK14727-PA 336 GK14727-PA 32..326 61..359 576 44.7 Plus
Dwil\GK18888-PA 278 GK18888-PA 2..278 82..367 556 44.8 Plus
Dwil\GK14728-PA 292 GK14728-PA 7..291 76..363 551 43.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25202-PA 336 GE25202-PA 1..336 35..370 1769 98.5 Plus
Dyak\GE25204-PA 287 GE25204-PA 1..287 84..370 1500 98.3 Plus
Dyak\GE19137-PA 331 GE19137-PA 10..324 49..362 570 41.2 Plus
Dyak\GE19139-PA 326 GE19139-PA 26..319 67..359 567 43 Plus
Dyak\GE19140-PA 329 GE19140-PA 24..319 69..359 557 44.8 Plus