Clone LD11958 Report

Search the DGRC for LD11958

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:119
Well:58
Vector:pBS SK-
Associated Gene/TranscriptImpE3-RB
Protein status:LD11958.pep: gold
Preliminary Size:2182
Sequenced Size:2254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2723 2001-01-01 Release 2 assignment
CG2747 2001-01-01 Release 2 assignment
CG2723 2001-10-10 Blastp of sequenced clone
CG2723 2003-01-01 Sim4 clustering to Release 3
ImpE3 2008-04-29 Release 5.5 accounting
ImpE3 2008-08-15 Release 5.9 accounting
ImpE3 2008-12-18 5.12 accounting

Clone Sequence Records

LD11958.complete Sequence

2254 bp (2254 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061140

> LD11958.complete
GCCGTTATGTCTGTGCTAAAAAAGCAGCGGCACGGCTTGCTTAGGAAACC
CGTTATGCTAAGTCGTTTACCGTGCTCCAATTTCCTCGAAAAAAGCGAAA
ACTCATCTAGACGGCAACACAAGAGCAACAACAACAGGTTAATGCTTCTC
AAACAGCTGTTTGCCGGGCTCCCTTGCTCTCCTTTTTTGATCGACAGCGG
TCATCAATGGCTCTCAAAGTGTCGCACTTGCAAGTGATTCTTAAACTGCA
CCAAAGATGCATTTAATTTAATGTAAGAGCTTTTGTACTCCTTGCAAATG
AATAAAGCACCCAAAATCAGGTTTATGTGCGGTTCGCCTGCTTTCTGCCT
GTGTTTGTGCACACTTTGCATATTTATGACCAAACTGGTTGTTCTTTTGG
CAACGGAACATCTTTCACTCTTTCCAAGAACAACATTCTCCGCCAAAAGT
CGGTGGTTACAAAATTTACGCAACAAGCGGCGATCGCGGTCGCTGGCCTC
TCCACTCAACGAGTTTGCTAAAACCCCCAAAAAATCGCATGTGAAAAGTT
GAAGCCCAACACCGAAGCTATAAGTATGCTCAGAAATCATTGACGCTATT
CCATTAGGGCAAATGATTTAAAAAGGAAAACCGAGAAGTATTGCTTTAAT
AACATTTATTAATAGAAATAAAAGATTGTGATGATACTCAAATTAATATA
AAATCAATACAGATTAGTTGTAATCGTTTGACCCTGAAGATTTTTTTATA
TTTTCTGCGCGTTAAAATACCTTTTGAAAGAGTATAAGCTAAAGCCGAAC
CCGCTGTCACCCATTTTGAAAACCAGATACAGATACGGAGACAAAGACAG
ATGCAGAGCCAACTACAGATGCTCGCTGGTTGCTGGGAAGAGTCGCTTCA
GTTGAGTGCCTCCATTCCCCCAGAGTAAACCGTTCCCGCCAGAAGAAAGT
AAGAAAAGCGAGAAATGCGCAGTGGGCTAACGGTTCGTCCAATGCTGGTG
GTGCTTCTAGTGGGTCACCTAGTGGATCCAGTGGCGCCGGCTAACCTACT
GACTAGCTATCTGCCCGCCTCCATGCAGGCCTTGGCATACTATATTGACC
TGCTGCAGTACGAGCCACTATCAAGCACAACAGTGGAGCCTCCTTTCAGT
GCGGATGAAGAAGGTATGGAATCCACCACTGCAAATCCGCGCCCATCCAC
ACCGTTGCCCACGAGGATGAGAACCACTACCACAAGGCGACCGATTGGAG
CAGGTGCGTCTGGATCTGGTGGCATGGGCTGGTGGCAGCCGCCAAGTTGG
TGGGAAACGCCGAAGAGATCATCCACAACCGAGAGACCCACATCGCCACC
CACTGTGCCGCACCGTCCGGCAATTTTTGCACCAACTGCGCCGCCGGAAA
AGTCCCTTGAGGGCAACGATCTATTTGCAGAAATCAAAGATGATAGCGAC
TTTGATACCCTGCCTTTGTCTTTGATCCGTGATATTCAAAGCGAGCGCTA
CGACTTTACCAACGATGTGGAGTCACTGGATAACTTTTTGCGCCTCTACG
ACGATAACTACGGAAGGGCCGCTTTCGGTTCTGAGTCCGCGATGGATCGA
TGGAGCACCGCCTCGATCGCAGGCAAAAAGAGAGTTCCTCCCACTAAGCC
CTATGTGGATTTCCTGCTGGTTTACGATCTGCTAAAGCGCGATGCTAAGG
CGGCGAGTCTGAGCAAGTACGAGGGATATTCCGAGAATCTGCTGGTGGAG
CTGCATGCCTTGTCACAGGTTTCGGCGGCCAGGCAATTGTATACTCTATT
TAAAAGGATGTTGGACCGGGGCGATATCCAGCGCAGTGACGTGGTGGCCC
GCGTGCAGGGAATCGCCAAAGATCTGGGGAATCCCAAAAGCCCCACTTCC
AAGGCATTGACTTTTATTCCCAGCATGCAGTTTTTACCTTAAGCTCTTAG
CATAAGTCGCAATAAAGTCGAAGGACCTACTGACCTTACAATTGTGTGTG
TACTTTGATAAATTCGAATTTTTGTTTTGGGGAATAGTCACCCAAAATCA
GTTTGAAACAAGAGCTGATAAAATAGTTTATATATTTATTTGAGCACATT
TTTTAGAAATATTAGACAGTGTACAAAGTTTTGTTTATACATAATTTGTA
GTGCATTGTTGTTTTATTATTGCAGATTAATCGGGGCCTTGTGCAAGGTT
TCTAACATTTTCAATAAAATAAAAATCGAAGCAACTAAAAAAAAAAAAAA
AAAA

LD11958.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE3-RA 2236 ImpE3-RA 1..2236 1..2236 11180 100 Plus
ImpE3.a 1511 ImpE3.a 101..1511 826..2236 7055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3854282..3856517 2236..1 11120 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8028209..8030445 2237..1 11185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7769040..7771276 2237..1 11185 100 Minus
Blast to na_te.dros performed 2019-03-16 19:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1235..1329 2173..2073 122 61.4 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 4839..4908 2203..2132 120 68.5 Minus

LD11958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:31 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3854282..3856517 1..2236 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:45 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..978 965..1942 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:21 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..978 965..1942 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:48 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 1..978 965..1942 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:18 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..978 965..1942 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:00 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 1..978 965..1942 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:26 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..2236 1..2236 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:21 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..2236 1..2236 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:48 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 1..1094 900..1993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:18 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RA 1..2236 1..2236 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:00 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE3-RB 1..1094 900..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:31 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8028210..8030445 1..2236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:31 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8028210..8030445 1..2236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:31 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8028210..8030445 1..2236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:48 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3853932..3856167 1..2236 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:22 Download gff for LD11958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7769041..7771276 1..2236 100   Minus

LD11958.pep Sequence

Translation from 964 to 1941

> LD11958.pep
MRSGLTVRPMLVVLLVGHLVDPVAPANLLTSYLPASMQALAYYIDLLQYE
PLSSTTVEPPFSADEEGMESTTANPRPSTPLPTRMRTTTTRRPIGAGASG
SGGMGWWQPPSWWETPKRSSTTERPTSPPTVPHRPAIFAPTAPPEKSLEG
NDLFAEIKDDSDFDTLPLSLIRDIQSERYDFTNDVESLDNFLRLYDDNYG
RAAFGSESAMDRWSTASIAGKKRVPPTKPYVDFLLVYDLLKRDAKAASLS
KYEGYSENLLVELHALSQVSAARQLYTLFKRMLDRGDIQRSDVVARVQGI
AKDLGNPKSPTSKALTFIPSMQFLP*

LD11958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16868-PA 322 GF16868-PA 1..322 1..325 1199 77.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24730-PA 325 GG24730-PA 1..325 1..325 1339 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15156-PA 341 GH15156-PA 23..341 22..325 1043 68.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE3-PB 325 CG2723-PB 1..325 1..325 1686 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22492-PA 333 GI22492-PA 21..333 22..325 1025 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22337-PA 326 GL22337-PA 21..326 22..325 1152 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15448-PA 326 GA15448-PA 21..326 22..325 1159 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10435-PA 325 GM10435-PA 1..325 1..325 1450 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19436-PA 325 GD19436-PA 1..325 1..325 1644 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10093-PA 328 GJ10093-PA 25..328 22..325 1082 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13823-PA 542 GK13823-PA 241..542 23..325 1056 69.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25747-PA 325 GE25747-PA 1..325 1..325 1542 93.5 Plus
Dyak\GE25748-PA 286 GE25748-PA 117..286 156..325 854 95.3 Plus

LD11958.hyp Sequence

Translation from 964 to 1941

> LD11958.hyp
MRSGLTVRPMLVVLLVGHLVDPVAPANLLTSYLPASMQALAYYIDLLQYE
PLSSTTVEPPFSADEEGMESTTANPRPSTPLPTRMRTTTTRRPIGAGASG
SGGMGWWQPPSWWETPKRSSTTERPTSPPTVPHRPAIFAPTAPPEKSLEG
NDLFAEIKDDSDFDTLPLSLIRDIQSERYDFTNDVESLDNFLRLYDDNYG
RAAFGSESAMDRWSTASIAGKKRVPPTKPYVDFLLVYDLLKRDAKAASLS
KYEGYSENLLVELHALSQVSAARQLYTLFKRMLDRGDIQRSDVVARVQGI
AKDLGNPKSPTSKALTFIPSMQFLP*

LD11958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE3-PB 325 CG2723-PB 1..325 1..325 1686 100 Plus