Clone LD12022 Report

Search the DGRC for LD12022

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:120
Well:22
Vector:pBS SK-
Associated Gene/Transcriptpie-RA
Protein status:LD12022.pep: gold
Preliminary Size:1827
Sequenced Size:1964

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5354 2001-01-01 Release 2 assignment
CG5354 2001-10-10 Blastp of sequenced clone
pie 2008-04-29 Release 5.5 accounting
pie 2008-08-15 Release 5.9 accounting
pie 2008-12-18 5.12 accounting

Clone Sequence Records

LD12022.complete Sequence

1964 bp (1964 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061141

> LD12022.complete
ATAGTTTTAAAAATTATTCATAATAGCACTCAAACGAGTTGATCTGTCCA
GCAAAACTAGTCTGAGCGGCCAGCTTACAAATGGAAGATAACAAGGAGCT
GCAATGCTTAATATGCAAATATTCGGACACTGACGACCTGGTCTTTGGCG
AATGGATGATTGTACGCAATTTGCAGGTGCACTATTTTTGCCTGCTACTC
TCAACGCATTTGCCGCAGCGCGGCGGAGATAGCAGTGGAATCCTGGGATT
TCTGCTTCGCGATATCCGCGAGGAGGCAGCCGCCGCGGAGAAGAGGAAAT
GTTGGTACTGCAATAAGATTGGGGCCAGTTTGCAATGCGATCGTTGCCGG
TCATTGTTTCACCTGAAGTGCGGCCTGGAGAATCGCGCCGTTTTCGAGTT
CTGCGGCCAATACAAAAGCTACTGCTACAAATGCAGGCCGATGGATGACT
ACAAGCGACAGCTGCAGTCGAATCCGCCGAGGAACGCCACTTGCCCCATC
TGCTTCAGTTCCATCTATAAGGTAGAGCTGCATTGCGTTGTGTACGGTGA
CTGCTGCCGCCTCGGATTCGCCCATAAGAAATGCATGCGTCAGTACGCTC
TGACCTCCGGATATTACTTGCGTTGCATTTGGTGTCGTTCGGAACGTTTC
AGGGATTCCATACGCCTGCAGTCGGTATTCGTGCCCGATCGCGATGCCAC
GTGGGAGAAGCAACGGAACGCCTATAGGGAGCTCCACGAGCGCAATCTGA
AATGCGACCAGCCCAACTGCCTGTGCCCCAGTGGTAGAACTTATAATAGA
TTATCGTGGGTGATACTATGCTGCAGTTCTTGTGCCGCCACTTCGGCTCA
TCTTAAATGCTTGGTGGGCGCCCTGCGACTGCCGAAGAAGCGCGAGCGTA
CAGATTTCAAGTGCTCTATGTGCCTGGACGTGGAGAGGAGGATTGCTGAA
GGACCGGCTCGCACAACAGAAGAAACCAATGCTGACGGCGACAACCAGGT
GGATGGCTCTTTTTATGTGCAAAAATTGGGACCCGATGCTGCAACTCGAT
CCTTAACCCAGACTCCTGTTTTCTCCGAAGAAGACGAAAGCGAACGAAGT
AGTAATATCACGGTTATATTCAGCCAACCGAAATCTAACGCAACAAGCGA
GAGGTTATCCTTATCGCCGCCACAGGAGGAGATGATAGTGGAAATTCCTG
ATTCGCCAGAGGCGTCGCCAAAGACGTCCATCGATGAGAACCACTCGCCG
CAGCCAATAGCAAGAAGGGACACATCCGACTCACCACAGCCAATAGCAGC
AAGTGAGATCCCCGACTCACCGCAGCCAACAGCAGCAAGTGAGATCCCCG
ACTTACCGCAGACAACAGCAATAAACGTAAACCCTGAATTAACGCAGCAA
ACAGCATTAAACACGATTCCACACTCACCGCAGCCAGAAGCCAGCTTCTC
AACGCAGCTAGTATCACAAACTTTCGATTGTCCACAGCCGCAGGAACAAG
CTGTGGCGAAAGCTCCCAACTCACCGTCACTGCCGAAAGAGGATCCAAAT
ACTTTACTTGTGCTAAAATCGGGCTTTCAATGCCCTGGCGAACCATTTTT
CTACTTGGTTATCTACGAATTTGAGCACGGCACATGCATGGGTGAGTGCA
TTGGTACGTGTGTGCTGCGATTTAAAGAGGATGACCCGCGCATTCAGGAC
ACCTCGCAGGCAGCTTTGGAACGCGTCAACATAACACCAGACGATGTATG
GTGCCGCAGCGAGGACCGCGGCATCTTTGAGCATATCGAGAAGTTCCACG
AATGGTACAGATCAGAGGGGTTCTCTTAAATATTGTTTAAAACAATTCTT
AATGTTCTTAATGTTTTAAACAATTCTCTTGTGTGGGAATTAATTCGTCA
TAGAATTCTAGTCTCTTTATGCATATATTGTTTCGCATGATCATCCAAAA
AAAAAAAAAAAAAA

LD12022.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
pie-RA 2019 pie-RA 72..2019 1..1948 9740 100 Plus
pie.a 1945 pie.a 59..1396 1..1338 6690 100 Plus
pie.a 1945 pie.a 1393..1945 1394..1946 2750 99.8 Plus
pie.a 1945 pie.a 1301..1392 1279..1370 265 85.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10419561..10421294 1946..194 8430 98.9 Minus
chr2L 23010047 chr2L 10421361..10421554 194..1 970 100 Minus
chr2L 23010047 chr2L 10420076..10420209 1376..1243 280 80.6 Minus
chr2L 23010047 chr2L 10420112..10420245 1412..1279 280 80.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:58:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10420695..10422463 1962..194 8845 100 Minus
2L 23513712 2L 10422530..10422723 194..1 970 100 Minus
2L 23513712 2L 10421245..10421378 1376..1243 280 80.6 Minus
2L 23513712 2L 10421281..10421414 1412..1279 280 80.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10420695..10422463 1962..194 8845 100 Minus
2L 23513712 2L 10422530..10422723 194..1 970 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:49:59 has no hits.

LD12022.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:44 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10419561..10419643 1864..1946 100 == Minus
chr2L 10419644..10421293 195..1844 99 <- Minus
chr2L 10421361..10421554 1..194 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:49 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 1..1749 81..1829 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:00 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 1..1749 81..1829 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:42:55 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 1..1749 81..1829 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:51 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 1..1749 81..1829 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:02 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 1..1749 81..1829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:02 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 33..1978 1..1946 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:00 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 59..2004 1..1946 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:55 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 58..2003 1..1946 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:51 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 33..1978 1..1946 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:02 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
pie-RA 58..2003 1..1946 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:44 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10420711..10422462 195..1946 100 <- Minus
2L 10422530..10422723 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:44 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10420711..10422462 195..1946 100 <- Minus
2L 10422530..10422723 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:44 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10420711..10422462 195..1946 100 <- Minus
2L 10422530..10422723 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:55 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10420711..10422462 195..1946 100 <- Minus
arm_2L 10422530..10422723 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:28 Download gff for LD12022.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10420711..10422462 195..1946 100 <- Minus
2L 10422530..10422723 1..194 100   Minus

LD12022.pep Sequence

Translation from 80 to 1828

> LD12022.pep
MEDNKELQCLICKYSDTDDLVFGEWMIVRNLQVHYFCLLLSTHLPQRGGD
SSGILGFLLRDIREEAAAAEKRKCWYCNKIGASLQCDRCRSLFHLKCGLE
NRAVFEFCGQYKSYCYKCRPMDDYKRQLQSNPPRNATCPICFSSIYKVEL
HCVVYGDCCRLGFAHKKCMRQYALTSGYYLRCIWCRSERFRDSIRLQSVF
VPDRDATWEKQRNAYRELHERNLKCDQPNCLCPSGRTYNRLSWVILCCSS
CAATSAHLKCLVGALRLPKKRERTDFKCSMCLDVERRIAEGPARTTEETN
ADGDNQVDGSFYVQKLGPDAATRSLTQTPVFSEEDESERSSNITVIFSQP
KSNATSERLSLSPPQEEMIVEIPDSPEASPKTSIDENHSPQPIARRDTSD
SPQPIAASEIPDSPQPTAASEIPDLPQTTAINVNPELTQQTALNTIPHSP
QPEASFSTQLVSQTFDCPQPQEQAVAKAPNSPSLPKEDPNTLLVLKSGFQ
CPGEPFFYLVIYEFEHGTCMGECIGTCVLRFKEDDPRIQDTSQAALERVN
ITPDDVWCRSEDRGIFEHIEKFHEWYRSEGFS*

LD12022.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16590-PA 441 GF16590-PA 14..351 15..364 911 48.4 Plus
Dana\GF20450-PA 541 GF20450-PA 4..278 9..293 398 32.7 Plus
Dana\GF16590-PA 441 GF16590-PA 344..431 480..567 161 40.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23932-PA 549 GG23932-PA 1..549 1..582 2415 78.7 Plus
Dere\GG18009-PA 556 GG18009-PA 4..272 8..284 405 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12666-PA 481 GH12666-PA 21..400 18..411 995 49.6 Plus
Dgri\GH24325-PA 437 GH24325-PA 2..283 7..304 355 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
pie-PB 582 CG5354-PB 1..582 1..582 3161 100 Plus
pie-PA 582 CG5354-PA 1..582 1..582 3161 100 Plus
Phf7-PC 520 CG9576-PC 5..358 9..360 421 28.8 Plus
Phf7-PB 520 CG9576-PB 5..358 9..360 421 28.8 Plus
Phf7-PA 520 CG9576-PA 5..358 9..360 421 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16245-PA 489 GI16245-PA 16..486 16..574 1115 41.8 Plus
Dmoj\GI14805-PA 554 GI14805-PA 3..254 8..262 362 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15172-PA 469 GL15172-PA 1..461 26..570 1134 43 Plus
Dper\GL12919-PA 463 GL12919-PA 2..256 7..263 394 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22797-PA 469 GA22797-PA 1..461 26..570 1124 42.9 Plus
Dpse\GA21886-PA 463 GA21886-PA 2..256 7..263 382 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11670-PA 480 GM11670-PA 1..407 1..407 2079 94.3 Plus
Dsec\GM11670-PA 480 GM11670-PA 300..480 398..582 409 47.2 Plus
Dsec\GM22690-PA 523 GM22690-PA 3..258 7..262 392 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22259-PA 519 GD22259-PA 1..519 1..582 2525 82.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16710-PA 487 GJ16710-PA 3..398 8..381 1042 51.4 Plus
Dvir\GJ19472-PA 537 GJ19472-PA 3..252 8..260 362 33.8 Plus
Dvir\GJ16710-PA 487 GJ16710-PA 327..484 406..572 167 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19966-PA 459 GK19966-PA 6..372 9..369 939 49.5 Plus
Dwil\GK16334-PA 515 GK16334-PA 2..256 7..260 378 33.8 Plus
Dwil\GK19966-PA 459 GK19966-PA 348..445 470..557 192 42 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25954-PA 572 GE25954-PA 1..572 1..582 2475 79.6 Plus
Dyak\GE17340-PA 519 GE17340-PA 4..258 8..262 428 34.1 Plus

LD12022.hyp Sequence

Translation from 80 to 1828

> LD12022.hyp
MEDNKELQCLICKYSDTDDLVFGEWMIVRNLQVHYFCLLLSTHLPQRGGD
SSGILGFLLRDIREEAAAAEKRKCWYCNKIGASLQCDRCRSLFHLKCGLE
NRAVFEFCGQYKSYCYKCRPMDDYKRQLQSNPPRNATCPICFSSIYKVEL
HCVVYGDCCRLGFAHKKCMRQYALTSGYYLRCIWCRSERFRDSIRLQSVF
VPDRDATWEKQRNAYRELHERNLKCDQPNCLCPSGRTYNRLSWVILCCSS
CAATSAHLKCLVGALRLPKKRERTDFKCSMCLDVERRIAEGPARTTEETN
ADGDNQVDGSFYVQKLGPDAATRSLTQTPVFSEEDESERSSNITVIFSQP
KSNATSERLSLSPPQEEMIVEIPDSPEASPKTSIDENHSPQPIARRDTSD
SPQPIAASEIPDSPQPTAASEIPDLPQTTAINVNPELTQQTALNTIPHSP
QPEASFSTQLVSQTFDCPQPQEQAVAKAPNSPSLPKEDPNTLLVLKSGFQ
CPGEPFFYLVIYEFEHGTCMGECIGTCVLRFKEDDPRIQDTSQAALERVN
ITPDDVWCRSEDRGIFEHIEKFHEWYRSEGFS*

LD12022.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
pie-PB 582 CG5354-PB 1..582 1..582 3161 100 Plus
pie-PA 582 CG5354-PA 1..582 1..582 3161 100 Plus
Phf7-PC 520 CG9576-PC 5..358 9..360 421 28.8 Plus
Phf7-PB 520 CG9576-PB 5..358 9..360 421 28.8 Plus
Phf7-PA 520 CG9576-PA 5..358 9..360 421 28.8 Plus