BDGP Sequence Production Resources |
Search the DGRC for LD12035
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 120 |
Well: | 35 |
Vector: | pBS SK- |
Associated Gene/Transcript | ytr-RA |
Protein status: | LD12035.pep: gold |
Preliminary Size: | 1981 |
Sequenced Size: | 2109 |
Gene | Date | Evidence |
---|---|---|
CG17611 | 2001-01-01 | Release 2 assignment |
CG18426 | 2001-01-01 | Release 2 assignment |
CG18426 | 2001-10-10 | Blastp of sequenced clone |
CG18426 | 2003-01-01 | Sim4 clustering to Release 3 |
ytr | 2008-04-29 | Release 5.5 accounting |
ytr | 2008-08-15 | Release 5.9 accounting |
ytr | 2008-12-18 | 5.12 accounting |
2109 bp (2109 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061143
> LD12035.complete CATCGCATCCCTCGCATCATCATCCGCATTCTGCATTCCTCATTCCGTTT CGGCGTCGCGGCGAGATAACGCGCGTTGTTTATTTGGTTTTAGTTTTAAG TTAGCGCGTTTTTACCCACCGCCGGTGTCGCCCAAATAATGCTAGACACA GCCTAGTGCAACGGCAAACCATCATCAATCACTCAAACCGCCACACAAGC AGAGACCGAAACGGAGCCATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGC GCACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGC GCCGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCC GGATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAG TCGCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTC GGCGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGC GGCGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCG AAGGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGA TCAACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTG AAGACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGA GGGCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCC AGTACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCA TAGCAGTGCCTAGCAGCAGCCGTTGGCGTTGTCCTTGCAATTCCAATTGC CATTGGCCATCGCCATCGCCATCGCAGCAGCCACATCCTTTTCCGTTGCC CAACTAGTTTGCTACGCTTTTTTACTTGTCCGTGCCCAATGGGCAATGGG CGGCGGACGAAGACCTGCAATTTTATGCAATAGACCGGTTTACGAAATTC AGCCAGCTTTTGGCCCGTCAAAATTTCCACGCATCCAGCTAGTTCAGCAC GAGGACAGCCTCGCCACACACATACCTCAATTAGTTATTTAGTAGTCTAA GCCTGAAGTGCGCCTTTGTTATAGAGTTGGCCGCCAGGTTAATTTTACAA CAAAAGTCTGGGGCTGAAAGCCAGCCATCCCAGCCAGACGTTCTCGGATG GCGAATCTGCTTTCAGCTGCAGTCGACGACGCACGACGATTGCTTTTTGA ATATTTCAAAGTAATTAACAATTGTTTTTGTTGACATCTCGCCATTTTGT ACGCATACGAACGAATTAACTGAAGCCAGCCTGAGAAACCCAAATTCACA ACAGAAAAATTTCCAAACTCACACACAGACAATTACTTAAAGTATTTGAA AACTTACCACAGCCCGAAACGCACTCTTCACATACCCATACCCTTATCCT TACCCATACCCATACCCATCCTCATCCGCATCCAGATCCCCATCCCGATC CCAACCGCAATCGAAAAGACCTCCCAACAAACTTCCTCCATACGCTGCAA TAGTACAAGTTTTACAACCAAACAATATATATCAAATATATATTTAAATA TAGAAATTATATATACACACACACCACAAGTACCTTATCCCCGCAACCCC CGAAATGAATCCAACAATAGCCATAGCAATTTGTTGAAAGAACTATTATT TGTTGAACAATCAAAATGTTGTAATTAATCCAGTTAATTCCGATTTCAAT CACAAGTGCCAACAGATCAGGCAAGCAACGCTGAAGATGAATCACATTTG ATACAGATTACAGATATGTATTTGTATAATCATTCTTTTGTACTCTTTTT ATAAGATAGTAGGCATGAATTTTTGTACGCCTCAACGAGCTAACTATTTT AAGCAACAGTTTCAGTTACCCATTTCTTTGCGTTTGGAAAACAGCCACAT GTATTGGAAAATTTGAACCATTTTGGACCAGCACCACTCACACACATCTT ATAACAATTATTTGTAGTTTTACACACACGAAATTGCAGGGATTTTGTCT TATTTCATATTCTCCTACAATAAACTGATAATAAATTTGTAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19733260..19734882 | 2090..459 | 7880 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 19736656..19736953 | 460..163 | 1490 | 100 | Minus |
chr2R | 21145070 | chr2R | 19737018..19737181 | 164..1 | 805 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23847166..23848801 | 2094..459 | 8180 | 100 | Minus |
2R | 25286936 | 2R | 23850571..23850868 | 460..163 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 23850933..23851096 | 164..1 | 820 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23848365..23850000 | 2094..459 | 8180 | 100 | Minus |
2R | 25260384 | 2R | 23851770..23852067 | 460..163 | 1490 | 100 | Minus |
2R | 25260384 | 2R | 23852132..23852295 | 164..1 | 820 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2424 | 503..583 | 120 | 67.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19733260..19734880 | 461..2090 | 93 | <- | Minus |
chr2R | 19736656..19736952 | 164..460 | 100 | <- | Minus |
chr2R | 19737019..19737181 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..585 | 219..803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..585 | 219..803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..585 | 219..803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..585 | 219..803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..585 | 219..803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..2090 | 1..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..2090 | 1..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..2067 | 24..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..2090 | 1..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ytr-RA | 1..2067 | 24..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23847170..23848799 | 461..2090 | 100 | <- | Minus |
2R | 23850571..23850867 | 164..460 | 100 | <- | Minus |
2R | 23850934..23851096 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23847170..23848799 | 461..2090 | 100 | <- | Minus |
2R | 23850571..23850867 | 164..460 | 100 | <- | Minus |
2R | 23850934..23851096 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23847170..23848799 | 461..2090 | 100 | <- | Minus |
2R | 23850571..23850867 | 164..460 | 100 | <- | Minus |
2R | 23850934..23851096 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19734693..19736322 | 461..2090 | 100 | <- | Minus |
arm_2R | 19738094..19738390 | 164..460 | 100 | <- | Minus |
arm_2R | 19738457..19738619 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23848387..23850016 | 461..2090 | 100 | <- | Minus |
2R | 23851788..23852084 | 164..460 | 100 | <- | Minus |
2R | 23852151..23852313 | 1..163 | 100 | Minus |
Translation from 218 to 802
> LD12035.pep MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12454-PA | 178 | GF12454-PA | 99..178 | 113..194 | 428 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19991-PA | 188 | GG19991-PA | 1..188 | 1..194 | 892 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22911-PA | 118 | GH22911-PA | 33..118 | 114..194 | 384 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ytr-PB | 194 | CG18426-PB | 1..194 | 1..194 | 996 | 100 | Plus |
ytr-PA | 194 | CG18426-PA | 1..194 | 1..194 | 996 | 100 | Plus |
CG6227-PA | 1224 | CG6227-PA | 2..111 | 46..158 | 163 | 38.8 | Plus |
CG18809-PD | 362 | CG18809-PD | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PC | 362 | CG18809-PC | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PB | 362 | CG18809-PB | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PA | 362 | CG18809-PA | 32..208 | 5..184 | 161 | 31 | Plus |
fs(1)h-PB | 2038 | CG2252-PB | 1757..1845 | 40..117 | 149 | 40.4 | Plus |
fs(1)h-PG | 2046 | CG2252-PG | 1765..1853 | 40..117 | 149 | 40.4 | Plus |
Caper-PB | 594 | CG11266-PB | 70..169 | 3..116 | 147 | 37.9 | Plus |
Caper-PA | 594 | CG11266-PA | 70..169 | 3..116 | 147 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18400-PA | 177 | GI18400-PA | 90..177 | 107..194 | 452 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11065-PA | 184 | GL11065-PA | 95..184 | 107..194 | 423 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14932-PA | 185 | GA14932-PA | 95..185 | 107..194 | 422 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15504-PA | 191 | GM15504-PA | 1..191 | 1..194 | 924 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25007-PA | 191 | GD25007-PA | 1..191 | 1..194 | 924 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21480-PA | 106 | GJ21480-PA | 24..106 | 114..194 | 392 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21408-PA | 178 | GK21408-PA | 91..178 | 111..194 | 414 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11524-PA | 191 | GE11524-PA | 1..191 | 1..194 | 914 | 97.4 | Plus |
Translation from 218 to 802
> LD12035.hyp MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ytr-PB | 194 | CG18426-PB | 1..194 | 1..194 | 996 | 100 | Plus |
ytr-PA | 194 | CG18426-PA | 1..194 | 1..194 | 996 | 100 | Plus |
CG18809-PD | 362 | CG18809-PD | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PC | 362 | CG18809-PC | 32..208 | 5..184 | 161 | 31 | Plus |
CG18809-PB | 362 | CG18809-PB | 32..208 | 5..184 | 161 | 31 | Plus |