Clone LD12035 Report

Search the DGRC for LD12035

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:120
Well:35
Vector:pBS SK-
Associated Gene/Transcriptytr-RA
Protein status:LD12035.pep: gold
Preliminary Size:1981
Sequenced Size:2109

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17611 2001-01-01 Release 2 assignment
CG18426 2001-01-01 Release 2 assignment
CG18426 2001-10-10 Blastp of sequenced clone
CG18426 2003-01-01 Sim4 clustering to Release 3
ytr 2008-04-29 Release 5.5 accounting
ytr 2008-08-15 Release 5.9 accounting
ytr 2008-12-18 5.12 accounting

Clone Sequence Records

LD12035.complete Sequence

2109 bp (2109 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061143

> LD12035.complete
CATCGCATCCCTCGCATCATCATCCGCATTCTGCATTCCTCATTCCGTTT
CGGCGTCGCGGCGAGATAACGCGCGTTGTTTATTTGGTTTTAGTTTTAAG
TTAGCGCGTTTTTACCCACCGCCGGTGTCGCCCAAATAATGCTAGACACA
GCCTAGTGCAACGGCAAACCATCATCAATCACTCAAACCGCCACACAAGC
AGAGACCGAAACGGAGCCATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGC
GCACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGC
GCCGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCC
GGATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAG
TCGCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTC
GGCGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGC
GGCGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCG
AAGGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGA
TCAACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTG
AAGACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGA
GGGCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCC
AGTACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCA
TAGCAGTGCCTAGCAGCAGCCGTTGGCGTTGTCCTTGCAATTCCAATTGC
CATTGGCCATCGCCATCGCCATCGCAGCAGCCACATCCTTTTCCGTTGCC
CAACTAGTTTGCTACGCTTTTTTACTTGTCCGTGCCCAATGGGCAATGGG
CGGCGGACGAAGACCTGCAATTTTATGCAATAGACCGGTTTACGAAATTC
AGCCAGCTTTTGGCCCGTCAAAATTTCCACGCATCCAGCTAGTTCAGCAC
GAGGACAGCCTCGCCACACACATACCTCAATTAGTTATTTAGTAGTCTAA
GCCTGAAGTGCGCCTTTGTTATAGAGTTGGCCGCCAGGTTAATTTTACAA
CAAAAGTCTGGGGCTGAAAGCCAGCCATCCCAGCCAGACGTTCTCGGATG
GCGAATCTGCTTTCAGCTGCAGTCGACGACGCACGACGATTGCTTTTTGA
ATATTTCAAAGTAATTAACAATTGTTTTTGTTGACATCTCGCCATTTTGT
ACGCATACGAACGAATTAACTGAAGCCAGCCTGAGAAACCCAAATTCACA
ACAGAAAAATTTCCAAACTCACACACAGACAATTACTTAAAGTATTTGAA
AACTTACCACAGCCCGAAACGCACTCTTCACATACCCATACCCTTATCCT
TACCCATACCCATACCCATCCTCATCCGCATCCAGATCCCCATCCCGATC
CCAACCGCAATCGAAAAGACCTCCCAACAAACTTCCTCCATACGCTGCAA
TAGTACAAGTTTTACAACCAAACAATATATATCAAATATATATTTAAATA
TAGAAATTATATATACACACACACCACAAGTACCTTATCCCCGCAACCCC
CGAAATGAATCCAACAATAGCCATAGCAATTTGTTGAAAGAACTATTATT
TGTTGAACAATCAAAATGTTGTAATTAATCCAGTTAATTCCGATTTCAAT
CACAAGTGCCAACAGATCAGGCAAGCAACGCTGAAGATGAATCACATTTG
ATACAGATTACAGATATGTATTTGTATAATCATTCTTTTGTACTCTTTTT
ATAAGATAGTAGGCATGAATTTTTGTACGCCTCAACGAGCTAACTATTTT
AAGCAACAGTTTCAGTTACCCATTTCTTTGCGTTTGGAAAACAGCCACAT
GTATTGGAAAATTTGAACCATTTTGGACCAGCACCACTCACACACATCTT
ATAACAATTATTTGTAGTTTTACACACACGAAATTGCAGGGATTTTGTCT
TATTTCATATTCTCCTACAATAAACTGATAATAAATTTGTAAAAAAAAAA
AAAAAAAAA

LD12035.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-RA 2355 ytr-RA 183..2276 1..2094 10470 100 Plus
nc_8992.a 528 nc_8992.a 39..528 639..1128 2450 100 Plus
nc_8992.a 528 nc_8992.a 1..42 507..548 210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19733260..19734882 2090..459 7880 99.1 Minus
chr2R 21145070 chr2R 19736656..19736953 460..163 1490 100 Minus
chr2R 21145070 chr2R 19737018..19737181 164..1 805 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23847166..23848801 2094..459 8180 100 Minus
2R 25286936 2R 23850571..23850868 460..163 1490 100 Minus
2R 25286936 2R 23850933..23851096 164..1 820 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23848365..23850000 2094..459 8180 100 Minus
2R 25260384 2R 23851770..23852067 460..163 1490 100 Minus
2R 25260384 2R 23852132..23852295 164..1 820 100 Minus
Blast to na_te.dros performed 2019-03-15 18:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2424 503..583 120 67.5 Plus

LD12035.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:01 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19733260..19734880 461..2090 93 <- Minus
chr2R 19736656..19736952 164..460 100 <- Minus
chr2R 19737019..19737181 1..163 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:45:58 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 219..803 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:52 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 219..803 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:57 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 219..803 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:41 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 219..803 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:11 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..585 219..803 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:51 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..2090 1..2090 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:52 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..2090 1..2090 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:57 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..2067 24..2090 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:42 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..2090 1..2090 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:11 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
ytr-RA 1..2067 24..2090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:01 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23847170..23848799 461..2090 100 <- Minus
2R 23850571..23850867 164..460 100 <- Minus
2R 23850934..23851096 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:01 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23847170..23848799 461..2090 100 <- Minus
2R 23850571..23850867 164..460 100 <- Minus
2R 23850934..23851096 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:01 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23847170..23848799 461..2090 100 <- Minus
2R 23850571..23850867 164..460 100 <- Minus
2R 23850934..23851096 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:57 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19734693..19736322 461..2090 100 <- Minus
arm_2R 19738094..19738390 164..460 100 <- Minus
arm_2R 19738457..19738619 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:20 Download gff for LD12035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23848387..23850016 461..2090 100 <- Minus
2R 23851788..23852084 164..460 100 <- Minus
2R 23852151..23852313 1..163 100   Minus

LD12035.pep Sequence

Translation from 218 to 802

> LD12035.pep
MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG
RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG
GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC
TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*

LD12035.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12454-PA 178 GF12454-PA 99..178 113..194 428 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19991-PA 188 GG19991-PA 1..188 1..194 892 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22911-PA 118 GH22911-PA 33..118 114..194 384 88.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-PB 194 CG18426-PB 1..194 1..194 996 100 Plus
ytr-PA 194 CG18426-PA 1..194 1..194 996 100 Plus
CG6227-PA 1224 CG6227-PA 2..111 46..158 163 38.8 Plus
CG18809-PD 362 CG18809-PD 32..208 5..184 161 31 Plus
CG18809-PC 362 CG18809-PC 32..208 5..184 161 31 Plus
CG18809-PB 362 CG18809-PB 32..208 5..184 161 31 Plus
CG18809-PA 362 CG18809-PA 32..208 5..184 161 31 Plus
fs(1)h-PB 2038 CG2252-PB 1757..1845 40..117 149 40.4 Plus
fs(1)h-PG 2046 CG2252-PG 1765..1853 40..117 149 40.4 Plus
Caper-PB 594 CG11266-PB 70..169 3..116 147 37.9 Plus
Caper-PA 594 CG11266-PA 70..169 3..116 147 37.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18400-PA 177 GI18400-PA 90..177 107..194 452 93.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11065-PA 184 GL11065-PA 95..184 107..194 423 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14932-PA 185 GA14932-PA 95..185 107..194 422 91.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15504-PA 191 GM15504-PA 1..191 1..194 924 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25007-PA 191 GD25007-PA 1..191 1..194 924 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21480-PA 106 GJ21480-PA 24..106 114..194 392 91.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21408-PA 178 GK21408-PA 91..178 111..194 414 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11524-PA 191 GE11524-PA 1..191 1..194 914 97.4 Plus

LD12035.hyp Sequence

Translation from 218 to 802

> LD12035.hyp
MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG
RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG
GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC
TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVA*

LD12035.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
ytr-PB 194 CG18426-PB 1..194 1..194 996 100 Plus
ytr-PA 194 CG18426-PA 1..194 1..194 996 100 Plus
CG18809-PD 362 CG18809-PD 32..208 5..184 161 31 Plus
CG18809-PC 362 CG18809-PC 32..208 5..184 161 31 Plus
CG18809-PB 362 CG18809-PB 32..208 5..184 161 31 Plus