Clone LD12115 Report

Search the DGRC for LD12115

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:121
Well:15
Vector:pBS SK-
Associated Gene/TranscriptCG7289-RA
Protein status:LD12115.pep: gold
Preliminary Size:2175
Sequenced Size:2151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7289 2001-01-01 Release 2 assignment
CG7289 2001-10-10 Blastp of sequenced clone
CG7289 2003-01-01 Sim4 clustering to Release 3
CG7289 2008-04-29 Release 5.5 accounting
CG7289 2008-08-15 Release 5.9 accounting
CG7289 2008-12-18 5.12 accounting

Clone Sequence Records

LD12115.complete Sequence

2151 bp (2151 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061146

> LD12115.complete
GGAAGCACAAAAATGGTCTAAAATTGAAATGTTTCTCAATTTTCCGACAT
TTTCCGGGCTCCAAAACACTGCTGGAAAATGTTGTTCCGCTCAGCGAAAA
GCAAGTTCGACGCCGGCGACGTGATGCGTCGAATGAAACGCCTGGCGGAG
GGCACGATCTCCTCGTACCGCCGCTTGTTCCTCCTGCTCCTCTGCGTCTG
TGTGGTCTTCTATATGATTCCGCCGATCTTTCGCTATATCTTCCTTAGTG
CTCCAGAACAGAAGGATCCCCACAGTATGTGCATGGATGACCGGCTGACG
CCCTTCATCCTCCAGAACTTTGAATTCGATGCCAATATCCGTCACGTGTC
ACCAGCGAAAATGCCTGGTGAACGCGATTTCACGCCCTACGTCGGCAACG
GCTACCTGGGCCTGGAGATCGCACACGACGCTTTCCTGAACATCAAGAAT
GGCAGGGCCATGCAGCTGCCTATTCCTTTCCAGCCGGTGGTCTCCGTTTC
GGGAGGATCCGCATCTGGCGGCGAAAAGGAAGCCACTGTCGTCGAATATC
TGACGGGAATGGTGCATCGGTTCCAATGCTTTGCCGGTTACTTTGTTTCG
TACACCTACTACGCCCATCGCACTCAGCCGAATATCTTCATGCAAGAGCT
GCAGATCACAAACACCAGGAACCTCTTGGAGGACATAGAACTGATCATGC
CACGCGTCAATCTCCAGAAGCTCACCAGGCGAACTGTTCCCCTAAGTGAA
CCCGTCTCCGTGGGAGTGTTCACCTACACAGAGTTGGAGGTGCTCTCGGG
CACAGTCCAGCTTCAGGCAGAAAATCCCAGTAAATCCATTGTTATAAGCA
TAGTGAAGCCGCAGATGGACTCCAAGCTGCAGCTGAGAAAGCGCGGCACA
GTGCGAATTGTGTATCCCACAGCAGTGCATTACTCAAAACCAGTGGCGGA
GGAAAAAATCGGTGGTATAAGCGAGACCATCGAGCAGCAGGCCACTCAGG
CGATGGCGAAGCTGCTCCAAAAGCTTGGCTCCAAGCCCTCAAACCCAGGA
TCCTTGAACAGCGTAAACATCTATCGCCAGGAGCACATTGACGTTTGGAC
TGATTTGTGGGCCACTGGATTTACGATAAGCACATCCAAGGCGGAGAATA
GCTTGAACGGCGACCGCATCAATGCCACGATGTATGCAGTTCTCTCCCAG
GTGCGCAGCTTCGAGTTCGAGGAGGCGGGTGGCTCCAAAAAGGAGGATAT
AGCAAAGGCGCTAACGTACGCCGAAGGCTGCTACGATTCGTATCACACTC
TGCAGGCGGAGAATCTTTGGCGCGAGATGTCTAATCTTCAGCAGCTTAAC
TCCCTGGTTACGTCGTGGATGCTAACGTTGGAGAAACAGGGCTGCCACAA
TCTTATTCGAGCGGGAGCTTCGGGAGTCATCCAAGCCATGGTCCTGAGCT
TTGGCAGCTTTCGTTTTAGCAATCAGCATCTGGAGTGCAACATCCATCCG
AAGTTTCTGCATAGGGACTTCCACTTCAGGCGCCTCAATTACGGCAACAA
AACCCATGTCAACGTCACCATCATTGTGGATGATGACAACAAGGCGGTGA
TCAACATCGCGCTGGATCGTTCAGACAGGAGCTACTACGCTTGCGATGGC
GGCTGCCTGGATGAGCCCGTGCTGCTCACGCAAAACCGACGACAATTCCC
AGTCAAACTGACTGAACCGCTAACAGCAATATTATACATAACCGAGGACA
AGCAACACATGGAAGAGCTGCACCATGCCATCCACGTGAAGGAAGTGGTC
GAGGCTCCCGCCCATGAGCAGCATTTGATCGCACTGCATCGGCATGGCCA
CCAACTGGGTGGATTGCCCACGCTCTTCTGGGTTTCCGTGTGCGCAATAA
TCATAGTATTCCACATATTCCTGTGCAAGCTCATTATCAAGGAGTACTGC
GAGCCGAGCGATAAGTTAAGATATCGTTATAACAAACCGTGATCCTAGTT
GTATATAAAAATTGGATGCTAGTAATATATGATTATCTAAATGCGAACAC
AAAGTTCTTCTGCTTTCTGTTACATCTGTTCATTTTTCATAAAAAATACG
AATCGTATTTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LD12115.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7289-RA 2157 CG7289-RA 43..2157 1..2115 10575 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1982296..1983711 265..1680 6825 98.8 Plus
chr2L 23010047 chr2L 1983955..1984264 1804..2113 1505 99 Plus
chr2L 23010047 chr2L 1981984..1982248 1..265 1295 99.2 Plus
chr2L 23010047 chr2L 1983769..1983893 1680..1804 610 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1982546..1983961 265..1680 7080 100 Plus
2L 23513712 2L 1984205..1984516 1804..2115 1560 100 Plus
2L 23513712 2L 1982234..1982498 1..265 1325 100 Plus
2L 23513712 2L 1984019..1984143 1680..1804 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1982546..1983961 265..1680 7080 100 Plus
2L 23513712 2L 1984205..1984516 1804..2115 1560 100 Plus
2L 23513712 2L 1982234..1982498 1..265 1325 100 Plus
2L 23513712 2L 1984019..1984143 1680..1804 625 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:33:06 has no hits.

LD12115.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:34:03 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1981984..1982248 1..265 99 -> Plus
chr2L 1982297..1983710 266..1679 98 -> Plus
chr2L 1983769..1983893 1680..1804 99 -> Plus
chr2L 1983956..1984264 1805..2113 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:04 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..1914 79..1992 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:54 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..1914 79..1992 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:07 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..1914 79..1992 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:45 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..1914 79..1992 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:32:59 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..1914 79..1992 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:53 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..2111 1..2111 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:53 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..2111 1..2111 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:07 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 18..2130 1..2113 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:45 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 1..2111 1..2111 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:32:59 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7289-RA 18..2130 1..2113 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:03 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1984206..1984514 1805..2113 100   Plus
2L 1982234..1982498 1..265 100 -> Plus
2L 1982547..1983960 266..1679 100 -> Plus
2L 1984019..1984143 1680..1804 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:03 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1984206..1984514 1805..2113 100   Plus
2L 1982234..1982498 1..265 100 -> Plus
2L 1982547..1983960 266..1679 100 -> Plus
2L 1984019..1984143 1680..1804 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:03 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1984206..1984514 1805..2113 100   Plus
2L 1982234..1982498 1..265 100 -> Plus
2L 1982547..1983960 266..1679 100 -> Plus
2L 1984019..1984143 1680..1804 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:07 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1982234..1982498 1..265 100 -> Plus
arm_2L 1982547..1983960 266..1679 100 -> Plus
arm_2L 1984019..1984143 1680..1804 100 -> Plus
arm_2L 1984206..1984514 1805..2113 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:21 Download gff for LD12115.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1982234..1982498 1..265 100 -> Plus
2L 1982547..1983960 266..1679 100 -> Plus
2L 1984019..1984143 1680..1804 100 -> Plus
2L 1984206..1984514 1805..2113 100   Plus

LD12115.pep Sequence

Translation from 78 to 1991

> LD12115.pep
MLFRSAKSKFDAGDVMRRMKRLAEGTISSYRRLFLLLLCVCVVFYMIPPI
FRYIFLSAPEQKDPHSMCMDDRLTPFILQNFEFDANIRHVSPAKMPGERD
FTPYVGNGYLGLEIAHDAFLNIKNGRAMQLPIPFQPVVSVSGGSASGGEK
EATVVEYLTGMVHRFQCFAGYFVSYTYYAHRTQPNIFMQELQITNTRNLL
EDIELIMPRVNLQKLTRRTVPLSEPVSVGVFTYTELEVLSGTVQLQAENP
SKSIVISIVKPQMDSKLQLRKRGTVRIVYPTAVHYSKPVAEEKIGGISET
IEQQATQAMAKLLQKLGSKPSNPGSLNSVNIYRQEHIDVWTDLWATGFTI
STSKAENSLNGDRINATMYAVLSQVRSFEFEEAGGSKKEDIAKALTYAEG
CYDSYHTLQAENLWREMSNLQQLNSLVTSWMLTLEKQGCHNLIRAGASGV
IQAMVLSFGSFRFSNQHLECNIHPKFLHRDFHFRRLNYGNKTHVNVTIIV
DDDNKAVINIALDRSDRSYYACDGGCLDEPVLLTQNRRQFPVKLTEPLTA
ILYITEDKQHMEELHHAIHVKEVVEAPAHEQHLIALHRHGHQLGGLPTLF
WVSVCAIIIVFHIFLCKLIIKEYCEPSDKLRYRYNKP*

LD12115.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14592-PA 634 GF14592-PA 1..634 1..637 3017 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24819-PA 635 GG24819-PA 1..635 1..637 3327 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25209-PA 643 GH25209-PA 1..643 1..637 2869 80.4 Plus
Dgri\GH10867-PA 540 GH10867-PA 1..540 1..534 2333 78.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7289-PA 637 CG7289-PA 1..637 1..637 3329 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17282-PA 645 GI17282-PA 1..645 1..637 2836 78.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19667-PA 640 GL19667-PA 1..640 1..637 3005 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20240-PA 640 GA20240-PA 1..640 1..637 2997 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16840-PA 637 GM16840-PA 1..637 1..637 3408 98.4 Plus
Dsec\GM10096-PA 390 GM10096-PA 1..375 1..375 1975 97.9 Plus
Dsec\GM10093-PA 128 GM10093-PA 1..113 263..375 590 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23122-PA 325 GD23122-PA 1..323 1..323 1673 96.6 Plus
Dsim\GD23123-PA 270 GD23123-PA 1..270 368..637 1464 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22886-PA 643 GJ22886-PA 1..643 1..637 2854 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24196-PA 638 GK24196-PA 1..638 1..637 2928 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17823-PA 637 GE17823-PA 1..637 1..637 3401 98 Plus

LD12115.hyp Sequence

Translation from 78 to 1991

> LD12115.hyp
MLFRSAKSKFDAGDVMRRMKRLAEGTISSYRRLFLLLLCVCVVFYMIPPI
FRYIFLSAPEQKDPHSMCMDDRLTPFILQNFEFDANIRHVSPAKMPGERD
FTPYVGNGYLGLEIAHDAFLNIKNGRAMQLPIPFQPVVSVSGGSASGGEK
EATVVEYLTGMVHRFQCFAGYFVSYTYYAHRTQPNIFMQELQITNTRNLL
EDIELIMPRVNLQKLTRRTVPLSEPVSVGVFTYTELEVLSGTVQLQAENP
SKSIVISIVKPQMDSKLQLRKRGTVRIVYPTAVHYSKPVAEEKIGGISET
IEQQATQAMAKLLQKLGSKPSNPGSLNSVNIYRQEHIDVWTDLWATGFTI
STSKAENSLNGDRINATMYAVLSQVRSFEFEEAGGSKKEDIAKALTYAEG
CYDSYHTLQAENLWREMSNLQQLNSLVTSWMLTLEKQGCHNLIRAGASGV
IQAMVLSFGSFRFSNQHLECNIHPKFLHRDFHFRRLNYGNKTHVNVTIIV
DDDNKAVINIALDRSDRSYYACDGGCLDEPVLLTQNRRQFPVKLTEPLTA
ILYITEDKQHMEELHHAIHVKEVVEAPAHEQHLIALHRHGHQLGGLPTLF
WVSVCAIIIVFHIFLCKLIIKEYCEPSDKLRYRYNKP*

LD12115.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7289-PA 637 CG7289-PA 1..637 1..637 3329 100 Plus