Clone LD12265 Report

Search the DGRC for LD12265

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:122
Well:65
Vector:pBS SK-
Associated Gene/TranscriptCG3077-RA
Protein status:LD12265.pep: gold
Preliminary Size:1439
Sequenced Size:1411

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3077 2001-01-01 Release 2 assignment
CG3077 2001-10-10 Blastp of sequenced clone
CG3077 2003-01-01 Sim4 clustering to Release 3
CG3077 2008-04-29 Release 5.5 accounting
CG3077 2008-08-15 Release 5.9 accounting
CG3077 2008-12-18 5.12 accounting

Clone Sequence Records

LD12265.complete Sequence

1411 bp (1411 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061149

> LD12265.complete
AAAACAAAGGCCTCCGTCCCACTTGCAATGTTTTTGTTTGGGGCGGAATT
AGTCACTGTAAATTGACTCAACAACTATGCCAACCGCATAATCCGCCGTA
AACCAGAAGCGAATTGCAAGTGCCCAGCTGCGGATCGAAAACAGCAGCCC
AGCGAGAAATCACAAAGAGATTCATAGAACCCGTATGCCCATTCACGCCG
TGATGGCCAAGCGCCTGCACCACCAGCCTACCTTCGATGGGGATCCACCC
GGTCCGGATGAGCTGGACAGTCCAGCCATCGAGGCGGCGGCCCTCGACAT
TCCCCCTCCCGAATCCGATAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAG
CCACAAGTGCTGAGTATAAGCCGACCACGGATGGGAGCACCGTGCTCCGC
TTTGACATCTTGCTGGCCCACATAATGCCGCCCGATGGCGAGGATGTGAA
GATCAAGCGGTTCGTGGTCTATGAGCTCACTGTTAAGCAGGATGGAGCCA
CGGAGGACACTCAGCCGGCAAAGATTGAGCGCCGATACACCGACTTTCGG
GAGCTTTATCTGGGCCTTAAGCGGCAGCATCCGGCGGAGATGGCCAACAA
GTACTTCCCAGCCAAGGTCCTGATGGGTAACTTCAAGTCCGAGCTGATCG
GCGAACGGAGTGCAGCCTTCGAGGCATTCCTCACGTATGTGGCAAGCCAG
GCGATGCTCCGGGACTCGGAGTACTTCCTGCGCTTCCTGCAGCACGACGA
ACTGACCAGGGCGTGCCAGTTTCTGGATGAGCGGCGTAACGAAATGGCCA
TACCTATTCTGGAGAACTGTTTCCGCTTGCTGAACAAGATATACATGAAT
CGATCGAGGCCGGTGCTTTTGATACTCTGCCGTCTAGTGGCTGCCTGCAC
CTCATCCCCAGTGCCTCATCACGCGGCCGAGAGGTGGGCCCTGCTGGCAC
TGAGTCGCTTCGAGACGTTGTGCGATATTGATCTGCTGCCGCTCTACATT
CCCCTGCTTCACACCTGCGCCCATCTGTGGTGGCAGCGCGGCCAGGACCA
AAAGCCAATCACCGACCGACTGACTGACATGTCCAAGCAGGGCATCAACA
CGGCGAACACCGAGAGCCTCATGCAGGCTATACACAAGATCGATCCTCGC
ACTGAAACAATTTGAATCGTGAATCTCCGCTACAATTTTCATCCATTAGT
TTAATATTTTGTTCTGTAGTCTTTAGCTGTCCGGCGAAAAGTGCAATTAG
ATAATGTGTGCAATTAGTTTTAAGGTGAAAGAAGTATTTATCAACCTTTG
AGGTAGAGCCCATATGTACCCCCTTTGTCCTCCAAAGTAGTCCGTTCGTG
CGAACAATGTGTCACAAAGCATAACCAATTTAAGACAACAATTAAAAAAA
AAAAAAAAAAA

LD12265.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077.b 1780 CG3077.b 54..1457 1..1404 7020 100 Plus
CG3077-RA 1600 CG3077-RA 112..1515 1..1404 7020 100 Plus
CG3077.a 1495 CG3077.a 10..1410 1..1404 6950 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2764225..2764923 1032..334 3405 99.1 Minus
chr2L 23010047 chr2L 2763801..2764165 1393..1029 1750 98.6 Minus
chr2L 23010047 chr2L 2765219..2765409 191..1 940 99.5 Minus
chr2L 23010047 chr2L 2765005..2765150 337..192 700 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 1032..334 3495 100 Minus
2L 23513712 2L 2764067..2764442 1404..1029 1880 100 Minus
2L 23513712 2L 2765496..2765686 191..1 955 100 Minus
2L 23513712 2L 2765282..2765427 337..192 730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 1032..334 3495 100 Minus
2L 23513712 2L 2764067..2764442 1404..1029 1880 100 Minus
2L 23513712 2L 2765496..2765686 191..1 955 100 Minus
2L 23513712 2L 2765282..2765427 337..192 730 100 Minus
Blast to na_te.dros performed 2019-03-15 18:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 421..503 115 63.1 Plus

LD12265.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:03 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2763801..2764164 1030..1393 98 <- Minus
chr2L 2764228..2764921 336..1029 99 <- Minus
chr2L 2765007..2765150 192..335 98 <- Minus
chr2L 2765219..2765409 1..191 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:11 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 185..1165 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:55 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 185..1165 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:00 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 185..1165 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:46 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 185..1165 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:15 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 185..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:55 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..1393 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:55 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..1393 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:00 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..1372 22..1393 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:46 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..1393 1..1393 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:15 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..1372 22..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:03 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764078..2764441 1030..1393 100 <- Minus
2L 2764505..2765198 336..1029 100 <- Minus
2L 2765284..2765427 192..335 100 <- Minus
2L 2765496..2765686 1..191 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:03 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764078..2764441 1030..1393 100 <- Minus
2L 2764505..2765198 336..1029 100 <- Minus
2L 2765284..2765427 192..335 100 <- Minus
2L 2765496..2765686 1..191 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:03 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764078..2764441 1030..1393 100 <- Minus
2L 2764505..2765198 336..1029 100 <- Minus
2L 2765284..2765427 192..335 100 <- Minus
2L 2765496..2765686 1..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:00 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764078..2764441 1030..1393 100 <- Minus
arm_2L 2764505..2765198 336..1029 100 <- Minus
arm_2L 2765284..2765427 192..335 100 <- Minus
arm_2L 2765496..2765686 1..191 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:23 Download gff for LD12265.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764078..2764441 1030..1393 100 <- Minus
2L 2764505..2765198 336..1029 100 <- Minus
2L 2765284..2765427 192..335 100 <- Minus
2L 2765496..2765686 1..191 100   Minus

LD12265.pep Sequence

Translation from 184 to 1164

> LD12265.pep
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETI*

LD12265.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13873-PA 356 GF13873-PA 30..356 3..326 1478 84.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24494-PA 326 GG24494-PA 1..326 1..326 1698 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13141-PA 325 GH13141-PA 1..325 1..326 1129 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 326 CG3077-PA 1..326 1..326 1715 100 Plus
CG3077-PB 320 CG3077-PB 1..320 7..326 1683 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22902-PA 321 GI22902-PA 1..321 7..326 1311 78.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26446-PA 319 GL26446-PA 1..319 7..326 1414 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15910-PA 319 GA15910-PA 1..319 7..326 1414 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18201-PA 326 GM18201-PA 1..326 1..326 1713 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22806-PA 327 GD22806-PA 1..327 1..326 1719 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23451-PA 325 GJ23451-PA 25..325 31..326 1201 75.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24480-PA 320 GK24480-PA 1..320 7..326 1326 79.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15038-PA 326 GE15038-PA 1..326 1..326 1691 97.2 Plus

LD12265.hyp Sequence

Translation from 184 to 1164

> LD12265.hyp
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETI*

LD12265.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 326 CG3077-PA 1..326 1..326 1715 100 Plus
CG3077-PB 320 CG3077-PB 1..320 7..326 1683 100 Plus