BDGP Sequence Production Resources |
Search the DGRC for LD12305
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 123 |
Well: | 5 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4115-RA |
Protein status: | LD12305.pep: gold |
Sequenced Size: | 1117 |
Gene | Date | Evidence |
---|---|---|
CG4115 | 2008-04-29 | Release 5.5 accounting |
CG4115 | 2008-04-29 | Picked prior to 5.5 |
CG4115 | 2008-08-15 | Release 5.9 accounting |
CG4115 | 2008-12-18 | 5.12 accounting |
1117 bp assembled on 2007-07-18
GenBank Submission: BT030988
> LD12305.complete ATCAGTGCCAGCCGATCGGTCGGTAGAGAGAAGTGCGTCGCGAGTCCAAA AAAGAAAATCGAGCCCGCAGAAAGTGCCAGTGAATAGACTGATAAAGCAA ACAAAAATGAAAGCTTTCATTATCGCCGGAGTGTGCGTGTTGAGCGTGCT GAGCCTGGGATCCGCTCAGTTCCAGAACGGACGTCTGGAGCCGCCGAATC CGCAGCTCTGTGCCCAGCGTGTCATTCACGAGAAGACTCCCGATGGCAAG GGTTACTTCTTCTCGTGGCGCGACCCTCAGCTGAAGGGCGTGGAGGAGGA CTGGCTGACCGCCAGGAACTACTGCCGCAGGCGCTGCATGGACTCCGTTT CCCTGGAGACCAGTTTGGAGAACGAGTGGATCAAGCAGTATGTTGTGCGC GAGAATGTGAAATACATCTGGACCAGCGGCCGCTTGTGTGACTTCAAGGG CTGTGACCGCCCCGATCTGCAGCCCACAAACATCAACGGTTGGTTCTGGA CCGCCACACTGCAGAAACTGGCACCAACCACTGAGAGGAACCAGGGCGAT TGGTCGCCCACCGGAGGCATTGGCCTGCCCCAGCCGGACAACCGCGAGTA CAAGCAGAATGGAGCGCCGGAGAATTGTCTCGCCCTGCTGAATCAGTTCT ACAACGATGGCGTAAACTGGCACGATGTGGCATGCCATCACAAGAAGAGC TTCGTCTGCGAGGAGAACGATGCTCTGCTGAAGTATGTGCGCTACACGAA CCCCAATCTGCGCATCTAAGAGGATCGCGATCAGGATCAGAATCCGAATG CGAATGTGGGCTGGCGGAAGGACCAGCGACACTCTCCAAGTAAAACCAAA AATGATATTTCCCAAATCGGCAGCGGGAACGATGATCGATGTCAACTATA TGTCTAATCTCCGATTGTCTTTGAATGCAAAGTTTTCTGGCCAAATTGCT GCATGATATACTTACTTATGAACCCTATCCTGGTAACCACCTTCCAATTC TCTGCGCTCTGTTCTGTCTCATCAACTAGTTTAATTCTTAATTTTGTATT AATTTATGATTTTCTTTAATTATAATAAAAGATTCGAAACGATTTTGATA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4115-RA | 1208 | CG4115-RA | 24..1124 | 1..1101 | 5505 | 100 | Plus |
CG6055.b | 982 | CG6055.b | 219..288 | 291..360 | 185 | 84.2 | Plus |
CG6055.a | 1031 | CG6055.a | 268..337 | 291..360 | 185 | 84.2 | Plus |
CG6055.b | 982 | CG6055.b | 572..682 | 647..757 | 180 | 77.4 | Plus |
CG6055.a | 1031 | CG6055.a | 621..731 | 647..757 | 180 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8187940..8188632 | 407..1099 | 3450 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 8185401..8185652 | 1..252 | 1260 | 100 | Plus |
chr3R | 27901430 | chr3R | 8185713..8185869 | 252..408 | 770 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 7470777..7470846 | 291..360 | 185 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
snmRNA:419-RA | 74 | CR33917-RA | 1..74 | 760..833 | 370 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12362563..12363257 | 407..1101 | 3475 | 100 | Plus |
3R | 32079331 | 3R | 12360024..12360275 | 1..252 | 1260 | 100 | Plus |
3R | 32079331 | 3R | 12360336..12360492 | 252..408 | 785 | 100 | Plus |
2L | 23513712 | 2L | 7471730..7471799 | 291..360 | 185 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12103394..12104088 | 407..1101 | 3475 | 100 | Plus |
3R | 31820162 | 3R | 12100855..12101106 | 1..252 | 1260 | 100 | Plus |
3R | 31820162 | 3R | 12101167..12101323 | 252..408 | 785 | 100 | Plus |
2L | 23513712 | 2L | 7471730..7471799 | 291..360 | 185 | 84.2 | Plus |
2L | 23513712 | 2L | 7472083..7472193 | 647..757 | 180 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3817..3889 | 1099..1022 | 126 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8185401..8185652 | 1..252 | 100 | -> | Plus |
chr3R | 8185714..8185867 | 253..406 | 99 | -> | Plus |
chr3R | 8187940..8188562 | 407..1029 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 1..663 | 107..769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 1..663 | 107..769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 1..663 | 107..769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 1..663 | 107..769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 1..663 | 107..769 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
snmRNA:419-RA | 1..74 | 760..833 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 14..1110 | 1..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 14..1110 | 1..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 14..1110 | 1..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 14..1110 | 1..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4115-RA | 17..1115 | 1..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12360024..12360275 | 1..252 | 100 | -> | Plus |
3R | 12360337..12360490 | 253..406 | 100 | -> | Plus |
3R | 12362563..12363255 | 407..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12360024..12360275 | 1..252 | 100 | -> | Plus |
3R | 12360337..12360490 | 253..406 | 100 | -> | Plus |
3R | 12362563..12363255 | 407..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12360024..12360275 | 1..252 | 100 | -> | Plus |
3R | 12360337..12360490 | 253..406 | 100 | -> | Plus |
3R | 12362563..12363255 | 407..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8186059..8186212 | 253..406 | 100 | -> | Plus |
arm_3R | 8185746..8185997 | 1..252 | 100 | -> | Plus |
arm_3R | 8188285..8188977 | 407..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12101168..12101321 | 253..406 | 100 | -> | Plus |
3R | 12100855..12101106 | 1..252 | 100 | -> | Plus |
3R | 12103394..12104086 | 407..1099 | 100 | Plus |
Translation from 0 to 768
> LD12305.hyp SVPADRSVERSASRVQKRKSSPQKVPVNRLIKQTKMKAFIIAGVCVLSVL SLGSAQFQNGRLEPPNPQLCAQRVIHEKTPDGKGYFFSWRDPQLKGVEED WLTARNYCRRRCMDSVSLETSLENEWIKQYVVRENVKYIWTSGRLCDFKG CDRPDLQPTNINGWFWTATLQKLAPTTERNQGDWSPTGGIGLPQPDNREY KQNGAPENCLALLNQFYNDGVNWHDVACHHKKSFVCEENDALLKYVRYTN PNLRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4115-PA | 220 | CG4115-PA | 1..220 | 36..255 | 1228 | 100 | Plus |
CG6055-PB | 219 | CG6055-PB | 22..219 | 61..255 | 666 | 59.3 | Plus |
CG6055-PA | 219 | CG6055-PA | 22..219 | 61..255 | 666 | 59.3 | Plus |
Clect27-PB | 231 | CG3244-PB | 10..231 | 39..255 | 498 | 44.4 | Plus |
Clect27-PA | 231 | CG3244-PA | 10..231 | 39..255 | 498 | 44.4 | Plus |
Translation from 106 to 768
> LD12305.pep MKAFIIAGVCVLSVLSLGSAQFQNGRLEPPNPQLCAQRVIHEKTPDGKGY FFSWRDPQLKGVEEDWLTARNYCRRRCMDSVSLETSLENEWIKQYVVREN VKYIWTSGRLCDFKGCDRPDLQPTNINGWFWTATLQKLAPTTERNQGDWS PTGGIGLPQPDNREYKQNGAPENCLALLNQFYNDGVNWHDVACHHKKSFV CEENDALLKYVRYTNPNLRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17242-PA | 220 | GF17242-PA | 1..220 | 1..220 | 1161 | 96.8 | Plus |
Dana\GF15862-PA | 219 | GF15862-PA | 22..219 | 26..220 | 638 | 58.8 | Plus |
Dana\GF14419-PA | 231 | GF14419-PA | 34..231 | 27..220 | 482 | 48.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18750-PA | 220 | GG18750-PA | 1..220 | 1..220 | 1174 | 98.6 | Plus |
Dere\GG10482-PA | 219 | GG10482-PA | 6..219 | 11..220 | 652 | 56.3 | Plus |
Dere\GG24353-PA | 231 | GG24353-PA | 7..231 | 1..220 | 481 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22097-PA | 220 | GH22097-PA | 1..220 | 1..220 | 1137 | 94.1 | Plus |
Dgri\GH11170-PA | 219 | GH11170-PA | 2..219 | 4..220 | 652 | 54.8 | Plus |
Dgri\GH10241-PA | 190 | GH10241-PA | 36..188 | 27..175 | 318 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4115-PA | 220 | CG4115-PA | 1..220 | 1..220 | 1228 | 100 | Plus |
CG6055-PB | 219 | CG6055-PB | 22..219 | 26..220 | 666 | 59.3 | Plus |
CG6055-PA | 219 | CG6055-PA | 22..219 | 26..220 | 666 | 59.3 | Plus |
Clect27-PB | 231 | CG3244-PB | 10..231 | 4..220 | 498 | 44.4 | Plus |
Clect27-PA | 231 | CG3244-PA | 10..231 | 4..220 | 498 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22702-PA | 220 | GI22702-PA | 1..220 | 1..220 | 1145 | 95 | Plus |
Dmoj\GI23788-PA | 219 | GI23788-PA | 2..219 | 4..220 | 652 | 54.3 | Plus |
Dmoj\GI15343-PA | 233 | GI15343-PA | 36..233 | 27..220 | 487 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22277-PA | 220 | GL22277-PA | 1..220 | 1..220 | 1153 | 95.9 | Plus |
Dper\GL25820-PA | 219 | GL25820-PA | 22..219 | 26..220 | 652 | 59.8 | Plus |
Dper\GL15967-PA | 232 | GL15967-PA | 35..232 | 27..220 | 478 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17968-PA | 220 | GA17968-PA | 1..220 | 1..220 | 1153 | 95.9 | Plus |
Dpse\GA19326-PA | 219 | GA19326-PA | 22..219 | 26..220 | 652 | 59.8 | Plus |
Dpse\GA16905-PA | 246 | GA16905-PA | 49..246 | 27..220 | 481 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24013-PA | 220 | GM24013-PA | 1..220 | 1..220 | 1189 | 100 | Plus |
Dsec\GM16469-PA | 219 | GM16469-PA | 6..219 | 11..220 | 654 | 56.3 | Plus |
Dsec\GM18074-PA | 231 | GM18074-PA | 7..231 | 1..220 | 480 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18814-PA | 220 | GD18814-PA | 1..220 | 1..220 | 1189 | 100 | Plus |
Dsim\GD23474-PA | 219 | GD23474-PA | 6..219 | 11..220 | 650 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23431-PA | 220 | GJ23431-PA | 1..220 | 1..220 | 1140 | 94.5 | Plus |
Dvir\GJ21003-PA | 219 | GJ21003-PA | 2..219 | 4..220 | 653 | 54.8 | Plus |
Dvir\GJ17272-PA | 233 | GJ17272-PA | 36..233 | 27..220 | 480 | 48.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11972-PA | 220 | GK11972-PA | 1..220 | 1..220 | 1141 | 95 | Plus |
Dwil\GK24308-PA | 219 | GK24308-PA | 2..219 | 4..220 | 652 | 55.4 | Plus |
Dwil\GK23915-PA | 233 | GK23915-PA | 7..233 | 4..220 | 490 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26172-PA | 220 | GE26172-PA | 1..220 | 1..220 | 1188 | 99.5 | Plus |
Dyak\GE14572-PA | 219 | GE14572-PA | 6..219 | 11..220 | 650 | 56.3 | Plus |
Dyak\GE14680-PA | 231 | GE14680-PA | 7..231 | 1..220 | 481 | 43.8 | Plus |