Clone LD12309 Report

Search the DGRC for LD12309

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:123
Well:9
Vector:pBS SK-
Associated Gene/Transcriptstas-RA
Protein status:LD12309.pep: gold
Preliminary Size:1805
Sequenced Size:1901

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8408 2001-01-01 Release 2 assignment
CG8408 2001-10-10 Blastp of sequenced clone
CG8408 2003-01-01 Sim4 clustering to Release 3
CG8408 2008-04-29 Release 5.5 accounting
CG8408 2008-08-15 Release 5.9 accounting
CG8408 2008-12-18 5.12 accounting

Clone Sequence Records

LD12309.complete Sequence

1901 bp (1901 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061150

> LD12309.complete
CTTAATCAACACTGCGCCTTCGGCCACACTGGTCGTGACGGAAATTTCTG
AAATTAATTTATTTTAAATTGACTTTTAAGCGTGATCGTTCGCCGAAAAA
GTCGGCTAAAGTGAAAAGCAATAGAAAAAATTTAAAAAAATTGCTATTAG
CGCAGTAGTCAACTACAATTACTCTAGTTAACGCAGTTTTAGCCAACTTC
CTATTTTTTTTATATTGATTAAATTCATTGTTGTAGACACACGCACATAC
ACATACGCATAGGCACGCGGATAGAGAGAAGAACAACAAATTGTGACTGG
CGCGCAAATAGGCACACAAATAGCATTAACAATTGATAAATAGCCTAGAC
GCTAAATGAGTCAATCGTGAATTAAAATCGGATATAGAAGGCTTATTAAA
TTTTCCTTCTTCAACTCGGGCTTACGTACATCGTGTCAAAGCCACAATGT
CTTACTGCAGTGGTGTGGCCATTTCCGCTGACGAGGGGATTACAATGCGC
AATGGCAGGGCAAAGGCGCTCCAGGAACACTCCCCGGATCAGGTGGCTAC
TCCACTGTTGCCACAGGTGCCGCCACAGGAGCAACAAGATCTTAATCCAC
AGCAACAACAGCAGCAGCAGCAACAACAACAGGCCACTCCGCAAAAGCAG
GCCATGTCCGCAGACGAGAAGAAGGCCACCAAGAAGTCCCTGGTCATCGT
AGCGGGCATTTTTGTGGCCAGCTTGGTCACCATGTGCTATGTGTACGCCA
TATTCCCCGAGCTCAACGCGTCGGAGAAACAACACTTGAAAATTCCGCGT
GATATCCAAGATGCTAAGATGCTAGCCAAGGTCCTTGATCGCTACAAGGA
CATGTACTACTTCGAAGTGATGTTTGGCGTCGTGGTCGCCTACGTATTCC
TGCAAACATTCGCCATTCCCGGATCGCTGTTCCTCTCGATTCTGCTGGGA
TTCCTGTACAAGTTCCCGATCGCCCTGTTCCTCATATGTTTCTGTTCGGC
GCTGGGCGCTACCCTATGCTATACACTTTCCAATCTGGTCGGACGTCGTC
TGATTCGTCACTTCTGGCCGAAGAAGACCAGCGAGTGGTCGAAGCATGTC
GAGGAGTACCGGGACAGTTTGTTCAACTATATGCTATTCCTGCGCATGAC
ACCGATCCTGCCTAACTGGTTCATCAACCTGGCATCGCCAGTCATCGGTG
TGCCGCTGCACATCTTCGCATTGGGCACCTTCTGCGGCGTGGCACCGCCC
TCGGTGATCGCCATCCAGGCGGGCAAGACGCTCCAGAAGATGACTAGTTC
GAGCGAGGCCTTCTCCTGGACCTCAATGGGCATCCTGATGGCCTGCGCCT
GTGCATCCTTGCTGCCCGGTCTACTCAAGAACAAGTTCAAGCACAAGAAG
GAGGCGTAAGCTGGCCGGAGGATGTGTCCAAAATATATTTATATATATGT
ATGCTATTCCCCAAACCGAAACCAAAACAAACCGAAAAATCATTAATTGT
AATTTATACACTACGCCAGAAACAACACACACACACATACCGATTTTTTT
TTGTTTGTAAATTTTTTTTCGGAATGCCACTTTGGGTCTCGATCCACTAT
GTTTAAGACAACTACAAAATATCTGTGTTTATCCTATTATTAAAATTATT
AATGTTTTCTGAACTTGTTCTTACCAAACAACTTTTGCATCATATATTTC
CATCAATCGTTTTTAAGTTAGTGAATTTTTGTTTAGTGCTATTGCAGTAT
TTACTAGAAAAGTTCTCCTCTAAGTAAAACGAGTTAGCAGAAATCCATTG
AATATTACGCAGCGTATGTAAGTTAAAAGATGATTAAAGTATGTATGTGT
CTGCAAGTAAACGTTAAAACAAATACAAATTACAAAAAAAAAAAAAAAAA
A

LD12309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8408-RA 1942 CG8408-RA 16..1901 1..1886 9430 100 Plus
CG8408.a 1444 CG8408.a 23..1440 469..1886 7090 100 Plus
CG8408-RB 1376 CG8408-RB 16..913 1..898 4490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17512565..17513549 1883..899 4925 100 Minus
chrX 22417052 chrX 17516755..17517222 468..1 2340 100 Minus
chrX 22417052 chrX 17516282..17516567 771..468 1200 93.8 Minus
chrX 22417052 chrX 17514874..17515002 898..770 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623218..17624205 1886..899 4940 100 Minus
X 23542271 X 17627429..17627896 468..1 2340 100 Minus
X 23542271 X 17626938..17627241 771..468 1520 100 Minus
X 23542271 X 17625530..17625658 898..770 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17631316..17632303 1886..899 4940 100 Minus
X 23527363 X 17635527..17635994 468..1 2340 100 Minus
X 23527363 X 17635036..17635339 771..468 1520 100 Minus
X 23527363 X 17633628..17633756 898..770 645 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:42:32 has no hits.

LD12309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:43:35 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17514874..17515002 770..898 100 <- Minus
chrX 17516284..17516420 633..769 100 == Minus
chrX 17516436..17516566 469..599 99 <- Minus
chrX 17512565..17513549 899..1883 100 <- Minus
chrX 17516755..17517222 1..468 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:15 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..963 447..1409 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:56 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..963 447..1409 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:41 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 1..963 447..1409 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:47 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..963 447..1409 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:03 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 1..963 447..1409 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:57 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:56 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:41 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 1..1882 2..1883 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:48 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..1883 1..1883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:03 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 1..1882 2..1883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:35 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
X 17623221..17624205 899..1883 100 <- Minus
X 17625530..17625658 770..898 100 <- Minus
X 17626940..17627240 469..769 100 <- Minus
X 17627429..17627896 1..468 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:35 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
X 17623221..17624205 899..1883 100 <- Minus
X 17625530..17625658 770..898 100 <- Minus
X 17626940..17627240 469..769 100 <- Minus
X 17627429..17627896 1..468 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:43:35 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
X 17623221..17624205 899..1883 100 <- Minus
X 17625530..17625658 770..898 100 <- Minus
X 17626940..17627240 469..769 100 <- Minus
X 17627429..17627896 1..468 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:41 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517254..17518238 899..1883 100 <- Minus
arm_X 17519563..17519691 770..898 100 <- Minus
arm_X 17520973..17521273 469..769 100 <- Minus
arm_X 17521462..17521929 1..468 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:24 Download gff for LD12309.complete
Subject Subject Range Query Range Percent Splice Strand
X 17631319..17632303 899..1883 100 <- Minus
X 17633628..17633756 770..898 100 <- Minus
X 17635038..17635338 469..769 100 <- Minus
X 17635527..17635994 1..468 100   Minus

LD12309.pep Sequence

Translation from 446 to 1408

> LD12309.pep
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEA*

LD12309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22553-PA 320 GF22553-PA 66..320 66..320 1317 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18175-PA 320 GG18175-PA 1..320 1..320 1533 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11899-PA 332 GH11899-PA 76..322 64..310 1260 94.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
stas-PA 320 CG8408-PA 1..320 1..320 1657 100 Plus
stas-PB 174 CG8408-PB 1..150 1..150 761 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14632-PA 251 GI14632-PA 1..241 70..310 1237 95.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20394-PA 358 GL20394-PA 91..358 69..320 1266 90.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21055-PA 341 GA21055-PA 91..341 69..320 1292 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13307-PA 312 GM13307-PA 1..312 1..320 1316 86.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17353-PA 314 GD17353-PA 1..314 1..320 1662 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19283-PA 359 GJ19283-PA 104..347 67..310 1256 95.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24991-PA 332 GK24991-PA 7..321 5..310 1236 75.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15585-PA 316 GE15585-PA 1..316 1..320 1642 96.9 Plus

LD12309.hyp Sequence

Translation from 446 to 1408

> LD12309.hyp
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEA*

LD12309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
stas-PA 320 CG8408-PA 1..320 1..320 1657 100 Plus
stas-PB 174 CG8408-PB 1..150 1..150 761 100 Plus