BDGP Sequence Production Resources |
Search the DGRC for LD12309
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 123 |
Well: | 9 |
Vector: | pBS SK- |
Associated Gene/Transcript | stas-RA |
Protein status: | LD12309.pep: gold |
Preliminary Size: | 1805 |
Sequenced Size: | 1901 |
Gene | Date | Evidence |
---|---|---|
CG8408 | 2001-01-01 | Release 2 assignment |
CG8408 | 2001-10-10 | Blastp of sequenced clone |
CG8408 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8408 | 2008-04-29 | Release 5.5 accounting |
CG8408 | 2008-08-15 | Release 5.9 accounting |
CG8408 | 2008-12-18 | 5.12 accounting |
1901 bp (1901 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061150
> LD12309.complete CTTAATCAACACTGCGCCTTCGGCCACACTGGTCGTGACGGAAATTTCTG AAATTAATTTATTTTAAATTGACTTTTAAGCGTGATCGTTCGCCGAAAAA GTCGGCTAAAGTGAAAAGCAATAGAAAAAATTTAAAAAAATTGCTATTAG CGCAGTAGTCAACTACAATTACTCTAGTTAACGCAGTTTTAGCCAACTTC CTATTTTTTTTATATTGATTAAATTCATTGTTGTAGACACACGCACATAC ACATACGCATAGGCACGCGGATAGAGAGAAGAACAACAAATTGTGACTGG CGCGCAAATAGGCACACAAATAGCATTAACAATTGATAAATAGCCTAGAC GCTAAATGAGTCAATCGTGAATTAAAATCGGATATAGAAGGCTTATTAAA TTTTCCTTCTTCAACTCGGGCTTACGTACATCGTGTCAAAGCCACAATGT CTTACTGCAGTGGTGTGGCCATTTCCGCTGACGAGGGGATTACAATGCGC AATGGCAGGGCAAAGGCGCTCCAGGAACACTCCCCGGATCAGGTGGCTAC TCCACTGTTGCCACAGGTGCCGCCACAGGAGCAACAAGATCTTAATCCAC AGCAACAACAGCAGCAGCAGCAACAACAACAGGCCACTCCGCAAAAGCAG GCCATGTCCGCAGACGAGAAGAAGGCCACCAAGAAGTCCCTGGTCATCGT AGCGGGCATTTTTGTGGCCAGCTTGGTCACCATGTGCTATGTGTACGCCA TATTCCCCGAGCTCAACGCGTCGGAGAAACAACACTTGAAAATTCCGCGT GATATCCAAGATGCTAAGATGCTAGCCAAGGTCCTTGATCGCTACAAGGA CATGTACTACTTCGAAGTGATGTTTGGCGTCGTGGTCGCCTACGTATTCC TGCAAACATTCGCCATTCCCGGATCGCTGTTCCTCTCGATTCTGCTGGGA TTCCTGTACAAGTTCCCGATCGCCCTGTTCCTCATATGTTTCTGTTCGGC GCTGGGCGCTACCCTATGCTATACACTTTCCAATCTGGTCGGACGTCGTC TGATTCGTCACTTCTGGCCGAAGAAGACCAGCGAGTGGTCGAAGCATGTC GAGGAGTACCGGGACAGTTTGTTCAACTATATGCTATTCCTGCGCATGAC ACCGATCCTGCCTAACTGGTTCATCAACCTGGCATCGCCAGTCATCGGTG TGCCGCTGCACATCTTCGCATTGGGCACCTTCTGCGGCGTGGCACCGCCC TCGGTGATCGCCATCCAGGCGGGCAAGACGCTCCAGAAGATGACTAGTTC GAGCGAGGCCTTCTCCTGGACCTCAATGGGCATCCTGATGGCCTGCGCCT GTGCATCCTTGCTGCCCGGTCTACTCAAGAACAAGTTCAAGCACAAGAAG GAGGCGTAAGCTGGCCGGAGGATGTGTCCAAAATATATTTATATATATGT ATGCTATTCCCCAAACCGAAACCAAAACAAACCGAAAAATCATTAATTGT AATTTATACACTACGCCAGAAACAACACACACACACATACCGATTTTTTT TTGTTTGTAAATTTTTTTTCGGAATGCCACTTTGGGTCTCGATCCACTAT GTTTAAGACAACTACAAAATATCTGTGTTTATCCTATTATTAAAATTATT AATGTTTTCTGAACTTGTTCTTACCAAACAACTTTTGCATCATATATTTC CATCAATCGTTTTTAAGTTAGTGAATTTTTGTTTAGTGCTATTGCAGTAT TTACTAGAAAAGTTCTCCTCTAAGTAAAACGAGTTAGCAGAAATCCATTG AATATTACGCAGCGTATGTAAGTTAAAAGATGATTAAAGTATGTATGTGT CTGCAAGTAAACGTTAAAACAAATACAAATTACAAAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 17512565..17513549 | 1883..899 | 4925 | 100 | Minus |
chrX | 22417052 | chrX | 17516755..17517222 | 468..1 | 2340 | 100 | Minus |
chrX | 22417052 | chrX | 17516282..17516567 | 771..468 | 1200 | 93.8 | Minus |
chrX | 22417052 | chrX | 17514874..17515002 | 898..770 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 17623218..17624205 | 1886..899 | 4940 | 100 | Minus |
X | 23542271 | X | 17627429..17627896 | 468..1 | 2340 | 100 | Minus |
X | 23542271 | X | 17626938..17627241 | 771..468 | 1520 | 100 | Minus |
X | 23542271 | X | 17625530..17625658 | 898..770 | 645 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 17631316..17632303 | 1886..899 | 4940 | 100 | Minus |
X | 23527363 | X | 17635527..17635994 | 468..1 | 2340 | 100 | Minus |
X | 23527363 | X | 17635036..17635339 | 771..468 | 1520 | 100 | Minus |
X | 23527363 | X | 17633628..17633756 | 898..770 | 645 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17514874..17515002 | 770..898 | 100 | <- | Minus |
chrX | 17516284..17516420 | 633..769 | 100 | == | Minus |
chrX | 17516436..17516566 | 469..599 | 99 | <- | Minus |
chrX | 17512565..17513549 | 899..1883 | 100 | <- | Minus |
chrX | 17516755..17517222 | 1..468 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..963 | 447..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..963 | 447..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stas-RA | 1..963 | 447..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..963 | 447..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stas-RA | 1..963 | 447..1409 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..1883 | 1..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..1883 | 1..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stas-RA | 1..1882 | 2..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8408-RA | 1..1883 | 1..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stas-RA | 1..1882 | 2..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17623221..17624205 | 899..1883 | 100 | <- | Minus |
X | 17625530..17625658 | 770..898 | 100 | <- | Minus |
X | 17626940..17627240 | 469..769 | 100 | <- | Minus |
X | 17627429..17627896 | 1..468 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17623221..17624205 | 899..1883 | 100 | <- | Minus |
X | 17625530..17625658 | 770..898 | 100 | <- | Minus |
X | 17626940..17627240 | 469..769 | 100 | <- | Minus |
X | 17627429..17627896 | 1..468 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17623221..17624205 | 899..1883 | 100 | <- | Minus |
X | 17625530..17625658 | 770..898 | 100 | <- | Minus |
X | 17626940..17627240 | 469..769 | 100 | <- | Minus |
X | 17627429..17627896 | 1..468 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17517254..17518238 | 899..1883 | 100 | <- | Minus |
arm_X | 17519563..17519691 | 770..898 | 100 | <- | Minus |
arm_X | 17520973..17521273 | 469..769 | 100 | <- | Minus |
arm_X | 17521462..17521929 | 1..468 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17631319..17632303 | 899..1883 | 100 | <- | Minus |
X | 17633628..17633756 | 770..898 | 100 | <- | Minus |
X | 17635038..17635338 | 469..769 | 100 | <- | Minus |
X | 17635527..17635994 | 1..468 | 100 | Minus |
Translation from 446 to 1408
> LD12309.pep MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC ACASLLPGLLKNKFKHKKEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22553-PA | 320 | GF22553-PA | 66..320 | 66..320 | 1317 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18175-PA | 320 | GG18175-PA | 1..320 | 1..320 | 1533 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11899-PA | 332 | GH11899-PA | 76..322 | 64..310 | 1260 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stas-PA | 320 | CG8408-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
stas-PB | 174 | CG8408-PB | 1..150 | 1..150 | 761 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14632-PA | 251 | GI14632-PA | 1..241 | 70..310 | 1237 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20394-PA | 358 | GL20394-PA | 91..358 | 69..320 | 1266 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21055-PA | 341 | GA21055-PA | 91..341 | 69..320 | 1292 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13307-PA | 312 | GM13307-PA | 1..312 | 1..320 | 1316 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17353-PA | 314 | GD17353-PA | 1..314 | 1..320 | 1662 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19283-PA | 359 | GJ19283-PA | 104..347 | 67..310 | 1256 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24991-PA | 332 | GK24991-PA | 7..321 | 5..310 | 1236 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15585-PA | 316 | GE15585-PA | 1..316 | 1..320 | 1642 | 96.9 | Plus |
Translation from 446 to 1408
> LD12309.hyp MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC ACASLLPGLLKNKFKHKKEA*