Clone LD12394 Report

Search the DGRC for LD12394

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:123
Well:94
Vector:pBS SK-
Associated Gene/Transcripttws-RA
Protein status:LD12394.pep: gold
Preliminary Size:2752
Sequenced Size:2517

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6235 2001-01-01 Release 2 assignment
CG6235 2001-10-10 Blastp of sequenced clone
CG6235 2003-01-01 Sim4 clustering to Release 3
tws 2008-04-29 Release 5.5 accounting
tws 2008-08-15 Release 5.9 accounting
tws 2008-12-18 5.12 accounting

Clone Sequence Records

LD12394.complete Sequence

2517 bp (2517 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061152

> LD12394.complete
CTGACTGTTTCGCCTTATTGCCCTGCTGCGGTTTGAGTTTCCCTATTTTC
CACTTTTCCACTGGCCGCGAGCACTGAGTTCGAATTCAATTTAAATTAGT
TCCCATTGTGCCTTTGTACGCCTCTTTGCCCGTCCAGCGCAGTGTGATAA
CCAGAAACCAAAGTGCCTGTGCCCAAGAAGTGCAGTGGAATCGGATGTGT
GGACAGGAATTTTAACCGTTGCAGCGCGCGACTTGAAGAGAACCGATCTG
AAAGTGATGAAAGTGTGGAGGCCACAGAAATAGGAACCAAAAATAAATTC
AAAATCAGAGTTTAAAAATAGCCGAGTGCATGGCAAATTATGAGATATCT
AAAGACTGTCAATTAAAATAGCACTGTTGTGTCTGTGATTTGTTGGATAT
CTGTTGTTTTAGAAGTCTGCTGATCATCGCTCGGATCACGTTCGTCTTGG
ACCAGCCCATTCTTAACCGCGTCCACGGGAAATCCAGTACCCAATGGGTC
GCTGGGGACGGCAGAGTCCGGTGCTGGAGCCGCCGGACCCACAGATGCAG
ACGACGCCCCCGCCGCCCACTCTGCCGCCAAGGACGTTTATGCGACAGTC
GAGCATCACGAAAATCGGCAACATGCTCAACACGGCCATCAACATCAATG
GAGCCAAGAAGCCAGCAAGTAATGGAGAGGCGTCTTGGTGCTTCTCACAG
ATTAAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATATCCTG
CGTGGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAAGGGCG
GTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCAATCCG
AGACGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAGCCCGA
ATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAAGATCC
GGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCAACGAC
AAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTCGGCGG
CTACAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAATGTAA
CGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGGAGGCC
TCCCCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAATTCAAT
AAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCTGCGGA
TCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTGTCGAC
ATCAAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCGGCCGA
ATTCCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAAGGGCA
CAATACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGCACAGC
AAACAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTCAGCGA
AATAATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCGCTACA
TGATCTCCAGGGATTACTTGAGCATCAAAGTGTGGGATCTGCATATGGAA
ACAAAGCCCATTGAGACCTATCCGGTTCATGAATACCTGCGCGCCAAGCT
GTGCTCGCTGTACGAGAATGACTGCATCTTCGACAAGTTCGAGTGCTGTT
GGAACGGCAAGGACAGCTCAATAATGACCGGAAGCTACAACAACTTCTTC
CGCGTCTTCGATCGCAACTCGAAAAAGGATGTGACGCTAGAGGCGTCCAG
GGACATCATCAAACCGAAAACGGTGCTTAAGCCACGGAAAGTTTGCACTG
GCGGCAAACGAAAGAAGGATGAGATCAGCGTGGACTGTCTAGATTTCAAC
AAGAAGATCCTGCACACCGCCTGGCACCCCGAAGAAAATATCATCGCCGT
GGCTGCGACCAATAACCTCTTCATATTTCAGGATAAATTTTAGCCAACAC
TCCTCACAAGAACCACACCATACGCCACAATCACACAAGCAACTATATCT
ACAGAAACACCAAGAAGTACGATCACGCCTCATTCTTATGTTAAATTAAT
CGGTTTGCTTCAAAATAGTTTTCAAATTTCACTTGCAATCAAATTGTTTG
CCTAACACCATTACCTCAGGCCACCCTTATCCCTATCCCCATCCATGTTC
TCCTTCCCGCCCCCAAACAAATTACATCATACATAATGCCATAGCAAAAG
CTTTGTAATGTATTTCTGCGCTGTATGCGTATAACGAGAAACAATACCAG
AAACTTAAGAGATGGAAACAAATTTTTATACATTACATTTATAAATAGTG
AAGCGTATATTTGATTTCATGTAGCGCAATTCAAAAACCCACAATAAGAG
TAATATATTATGTTAGCTATTGATTTCGCCGAAATTTTTTGTATAATTAG
CGCCAGCGCCGAAGTATTTGTAATAAAAGATAATAATATACAACATAAAA
AAAAAAAAAAAAAAAAA

LD12394.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
tws.h 3710 tws.h 250..2756 1..2507 12535 100 Plus
tws.n 3750 tws.n 27..2533 1..2507 12535 100 Plus
tws.i 4256 tws.i 250..2756 1..2507 12535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5953418..5954290 2496..1624 4335 99.8 Minus
chr3R 27901430 chr3R 5954401..5955210 1627..818 4035 99.9 Minus
chr3R 27901430 chr3R 5965101..5965522 422..1 2095 99.8 Minus
chr3R 27901430 chr3R 5960588..5960843 672..417 1265 99.6 Minus
chr3R 27901430 chr3R 5955269..5955420 820..669 760 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10127633..10128516 2507..1624 4420 100 Minus
3R 32079331 3R 10128627..10129436 1627..818 4050 100 Minus
3R 32079331 3R 10139327..10139748 422..1 2110 100 Minus
3R 32079331 3R 10134815..10135070 672..417 1265 99.6 Minus
3R 32079331 3R 10129495..10129646 820..669 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9868464..9869347 2507..1624 4420 100 Minus
3R 31820162 3R 9869458..9870267 1627..818 4050 100 Minus
3R 31820162 3R 9880158..9880579 422..1 2110 100 Minus
3R 31820162 3R 9875646..9875901 672..417 1265 99.6 Minus
3R 31820162 3R 9870326..9870477 820..669 760 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:50:40 has no hits.

LD12394.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:07 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5953418..5954289 1625..2496 99 <- Minus
chr3R 5954404..5955207 821..1624 99 <- Minus
chr3R 5955269..5955420 669..820 100 <- Minus
chr3R 5960592..5960837 423..668 100 <- Minus
chr3R 5965101..5965522 1..422 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:19 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 1..1500 494..1993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:40:13 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 1..1500 494..1993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:43:11 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 1..1500 494..1993 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:09:16 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RF 1..1500 494..1993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:21 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 1..1500 494..1993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:19 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 23..2518 1..2496 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:40:13 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 23..2518 1..2496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:11 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 25..2520 1..2496 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:09:16 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 23..2518 1..2496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:21 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RA 25..2520 1..2496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:07 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127644..10128515 1625..2496 100 <- Minus
3R 10128630..10129433 821..1624 100 <- Minus
3R 10129495..10129646 669..820 100 <- Minus
3R 10134819..10135064 423..668 100 <- Minus
3R 10139327..10139748 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:07 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127644..10128515 1625..2496 100 <- Minus
3R 10128630..10129433 821..1624 100 <- Minus
3R 10129495..10129646 669..820 100 <- Minus
3R 10134819..10135064 423..668 100 <- Minus
3R 10139327..10139748 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:07 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127644..10128515 1625..2496 100 <- Minus
3R 10128630..10129433 821..1624 100 <- Minus
3R 10129495..10129646 669..820 100 <- Minus
3R 10134819..10135064 423..668 100 <- Minus
3R 10139327..10139748 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:11 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5955217..5955368 669..820 100 <- Minus
arm_3R 5960541..5960786 423..668 100 <- Minus
arm_3R 5953366..5954237 1625..2496 100 <- Minus
arm_3R 5954352..5955155 821..1624 100 <- Minus
arm_3R 5965049..5965470 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:45:18 Download gff for LD12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9875650..9875895 423..668 100 <- Minus
3R 9868475..9869346 1625..2496 100 <- Minus
3R 9869461..9870264 821..1624 100 <- Minus
3R 9870326..9870477 669..820 100 <- Minus
3R 9880158..9880579 1..422 100   Minus

LD12394.pep Sequence

Translation from 493 to 1992

> LD12394.pep
MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN
INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD
KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN
KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ
NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD
LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS
KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG
RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE
CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV
CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*

LD12394.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18135-PA 497 GF18135-PA 1..497 1..499 2644 98.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17299-PA 499 GG17299-PA 1..499 1..499 2687 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13410-PA 493 GH13410-PA 1..493 1..499 2608 97.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
tws-PI 499 CG6235-PI 1..499 1..499 2650 100 Plus
tws-PF 499 CG6235-PF 1..499 1..499 2650 100 Plus
tws-PA 499 CG6235-PA 1..499 1..499 2650 100 Plus
tws-PH 443 CG6235-PH 2..443 58..499 2336 99.8 Plus
tws-PG 443 CG6235-PG 2..443 58..499 2336 99.8 Plus
tws-PC 443 CG6235-PC 2..443 58..499 2336 99.8 Plus
tws-PE 443 CG6235-PE 2..443 58..499 2336 99.8 Plus
tws-PD 443 CG6235-PD 2..443 58..499 2336 99.8 Plus
tws-PB 443 CG6235-PB 2..443 58..499 2336 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22387-PA 493 GI22387-PA 1..493 1..499 2600 96.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23674-PA 498 GL23674-PA 1..498 1..499 2621 97.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19463-PA 498 GA19463-PA 1..498 1..499 2621 97.8 Plus
Dpse\GA19463-PB 468 GA19463-PB 27..468 58..499 2363 99.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26183-PA 499 GM26183-PA 1..499 1..499 2692 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20732-PA 499 GD20732-PA 1..499 1..499 2692 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24420-PA 493 GJ24420-PA 1..493 1..499 2607 97 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11431-PA 494 GK11431-PA 1..494 1..499 2603 96.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24702-PA 499 GE24702-PA 1..499 1..499 2687 99.6 Plus

LD12394.hyp Sequence

Translation from 493 to 1992

> LD12394.hyp
MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN
INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD
KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN
KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ
NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD
LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS
KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG
RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE
CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV
CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*

LD12394.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
tws-PI 499 CG6235-PI 1..499 1..499 2650 100 Plus
tws-PF 499 CG6235-PF 1..499 1..499 2650 100 Plus
tws-PA 499 CG6235-PA 1..499 1..499 2650 100 Plus
tws-PH 443 CG6235-PH 2..443 58..499 2336 99.8 Plus
tws-PG 443 CG6235-PG 2..443 58..499 2336 99.8 Plus