BDGP Sequence Production Resources |
Search the DGRC for LD12394
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 123 |
Well: | 94 |
Vector: | pBS SK- |
Associated Gene/Transcript | tws-RA |
Protein status: | LD12394.pep: gold |
Preliminary Size: | 2752 |
Sequenced Size: | 2517 |
Gene | Date | Evidence |
---|---|---|
CG6235 | 2001-01-01 | Release 2 assignment |
CG6235 | 2001-10-10 | Blastp of sequenced clone |
CG6235 | 2003-01-01 | Sim4 clustering to Release 3 |
tws | 2008-04-29 | Release 5.5 accounting |
tws | 2008-08-15 | Release 5.9 accounting |
tws | 2008-12-18 | 5.12 accounting |
2517 bp (2517 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061152
> LD12394.complete CTGACTGTTTCGCCTTATTGCCCTGCTGCGGTTTGAGTTTCCCTATTTTC CACTTTTCCACTGGCCGCGAGCACTGAGTTCGAATTCAATTTAAATTAGT TCCCATTGTGCCTTTGTACGCCTCTTTGCCCGTCCAGCGCAGTGTGATAA CCAGAAACCAAAGTGCCTGTGCCCAAGAAGTGCAGTGGAATCGGATGTGT GGACAGGAATTTTAACCGTTGCAGCGCGCGACTTGAAGAGAACCGATCTG AAAGTGATGAAAGTGTGGAGGCCACAGAAATAGGAACCAAAAATAAATTC AAAATCAGAGTTTAAAAATAGCCGAGTGCATGGCAAATTATGAGATATCT AAAGACTGTCAATTAAAATAGCACTGTTGTGTCTGTGATTTGTTGGATAT CTGTTGTTTTAGAAGTCTGCTGATCATCGCTCGGATCACGTTCGTCTTGG ACCAGCCCATTCTTAACCGCGTCCACGGGAAATCCAGTACCCAATGGGTC GCTGGGGACGGCAGAGTCCGGTGCTGGAGCCGCCGGACCCACAGATGCAG ACGACGCCCCCGCCGCCCACTCTGCCGCCAAGGACGTTTATGCGACAGTC GAGCATCACGAAAATCGGCAACATGCTCAACACGGCCATCAACATCAATG GAGCCAAGAAGCCAGCAAGTAATGGAGAGGCGTCTTGGTGCTTCTCACAG ATTAAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATATCCTG CGTGGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAAGGGCG GTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCAATCCG AGACGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAGCCCGA ATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAAGATCC GGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCAACGAC AAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTCGGCGG CTACAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAATGTAA CGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGGAGGCC TCCCCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAATTCAAT AAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCTGCGGA TCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTGTCGAC ATCAAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCGGCCGA ATTCCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAAGGGCA CAATACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGCACAGC AAACAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTCAGCGA AATAATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCGCTACA TGATCTCCAGGGATTACTTGAGCATCAAAGTGTGGGATCTGCATATGGAA ACAAAGCCCATTGAGACCTATCCGGTTCATGAATACCTGCGCGCCAAGCT GTGCTCGCTGTACGAGAATGACTGCATCTTCGACAAGTTCGAGTGCTGTT GGAACGGCAAGGACAGCTCAATAATGACCGGAAGCTACAACAACTTCTTC CGCGTCTTCGATCGCAACTCGAAAAAGGATGTGACGCTAGAGGCGTCCAG GGACATCATCAAACCGAAAACGGTGCTTAAGCCACGGAAAGTTTGCACTG GCGGCAAACGAAAGAAGGATGAGATCAGCGTGGACTGTCTAGATTTCAAC AAGAAGATCCTGCACACCGCCTGGCACCCCGAAGAAAATATCATCGCCGT GGCTGCGACCAATAACCTCTTCATATTTCAGGATAAATTTTAGCCAACAC TCCTCACAAGAACCACACCATACGCCACAATCACACAAGCAACTATATCT ACAGAAACACCAAGAAGTACGATCACGCCTCATTCTTATGTTAAATTAAT CGGTTTGCTTCAAAATAGTTTTCAAATTTCACTTGCAATCAAATTGTTTG CCTAACACCATTACCTCAGGCCACCCTTATCCCTATCCCCATCCATGTTC TCCTTCCCGCCCCCAAACAAATTACATCATACATAATGCCATAGCAAAAG CTTTGTAATGTATTTCTGCGCTGTATGCGTATAACGAGAAACAATACCAG AAACTTAAGAGATGGAAACAAATTTTTATACATTACATTTATAAATAGTG AAGCGTATATTTGATTTCATGTAGCGCAATTCAAAAACCCACAATAAGAG TAATATATTATGTTAGCTATTGATTTCGCCGAAATTTTTTGTATAATTAG CGCCAGCGCCGAAGTATTTGTAATAAAAGATAATAATATACAACATAAAA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5953418..5954290 | 2496..1624 | 4335 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 5954401..5955210 | 1627..818 | 4035 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 5965101..5965522 | 422..1 | 2095 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 5960588..5960843 | 672..417 | 1265 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 5955269..5955420 | 820..669 | 760 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10127633..10128516 | 2507..1624 | 4420 | 100 | Minus |
3R | 32079331 | 3R | 10128627..10129436 | 1627..818 | 4050 | 100 | Minus |
3R | 32079331 | 3R | 10139327..10139748 | 422..1 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 10134815..10135070 | 672..417 | 1265 | 99.6 | Minus |
3R | 32079331 | 3R | 10129495..10129646 | 820..669 | 760 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9868464..9869347 | 2507..1624 | 4420 | 100 | Minus |
3R | 31820162 | 3R | 9869458..9870267 | 1627..818 | 4050 | 100 | Minus |
3R | 31820162 | 3R | 9880158..9880579 | 422..1 | 2110 | 100 | Minus |
3R | 31820162 | 3R | 9875646..9875901 | 672..417 | 1265 | 99.6 | Minus |
3R | 31820162 | 3R | 9870326..9870477 | 820..669 | 760 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5953418..5954289 | 1625..2496 | 99 | <- | Minus |
chr3R | 5954404..5955207 | 821..1624 | 99 | <- | Minus |
chr3R | 5955269..5955420 | 669..820 | 100 | <- | Minus |
chr3R | 5960592..5960837 | 423..668 | 100 | <- | Minus |
chr3R | 5965101..5965522 | 1..422 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RF | 1..1500 | 494..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RF | 1..1500 | 494..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 1..1500 | 494..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RF | 1..1500 | 494..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 1..1500 | 494..1993 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 23..2518 | 1..2496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 23..2518 | 1..2496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 25..2520 | 1..2496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 23..2518 | 1..2496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RA | 25..2520 | 1..2496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127644..10128515 | 1625..2496 | 100 | <- | Minus |
3R | 10128630..10129433 | 821..1624 | 100 | <- | Minus |
3R | 10129495..10129646 | 669..820 | 100 | <- | Minus |
3R | 10134819..10135064 | 423..668 | 100 | <- | Minus |
3R | 10139327..10139748 | 1..422 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127644..10128515 | 1625..2496 | 100 | <- | Minus |
3R | 10128630..10129433 | 821..1624 | 100 | <- | Minus |
3R | 10129495..10129646 | 669..820 | 100 | <- | Minus |
3R | 10134819..10135064 | 423..668 | 100 | <- | Minus |
3R | 10139327..10139748 | 1..422 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127644..10128515 | 1625..2496 | 100 | <- | Minus |
3R | 10128630..10129433 | 821..1624 | 100 | <- | Minus |
3R | 10129495..10129646 | 669..820 | 100 | <- | Minus |
3R | 10134819..10135064 | 423..668 | 100 | <- | Minus |
3R | 10139327..10139748 | 1..422 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5955217..5955368 | 669..820 | 100 | <- | Minus |
arm_3R | 5960541..5960786 | 423..668 | 100 | <- | Minus |
arm_3R | 5953366..5954237 | 1625..2496 | 100 | <- | Minus |
arm_3R | 5954352..5955155 | 821..1624 | 100 | <- | Minus |
arm_3R | 5965049..5965470 | 1..422 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9875650..9875895 | 423..668 | 100 | <- | Minus |
3R | 9868475..9869346 | 1625..2496 | 100 | <- | Minus |
3R | 9869461..9870264 | 821..1624 | 100 | <- | Minus |
3R | 9870326..9870477 | 669..820 | 100 | <- | Minus |
3R | 9880158..9880579 | 1..422 | 100 | Minus |
Translation from 493 to 1992
> LD12394.pep MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18135-PA | 497 | GF18135-PA | 1..497 | 1..499 | 2644 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17299-PA | 499 | GG17299-PA | 1..499 | 1..499 | 2687 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13410-PA | 493 | GH13410-PA | 1..493 | 1..499 | 2608 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tws-PI | 499 | CG6235-PI | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PF | 499 | CG6235-PF | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PA | 499 | CG6235-PA | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PH | 443 | CG6235-PH | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PG | 443 | CG6235-PG | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PC | 443 | CG6235-PC | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PE | 443 | CG6235-PE | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PD | 443 | CG6235-PD | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PB | 443 | CG6235-PB | 2..443 | 58..499 | 2336 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22387-PA | 493 | GI22387-PA | 1..493 | 1..499 | 2600 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23674-PA | 498 | GL23674-PA | 1..498 | 1..499 | 2621 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19463-PA | 498 | GA19463-PA | 1..498 | 1..499 | 2621 | 97.8 | Plus |
Dpse\GA19463-PB | 468 | GA19463-PB | 27..468 | 58..499 | 2363 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26183-PA | 499 | GM26183-PA | 1..499 | 1..499 | 2692 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20732-PA | 499 | GD20732-PA | 1..499 | 1..499 | 2692 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24420-PA | 493 | GJ24420-PA | 1..493 | 1..499 | 2607 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11431-PA | 494 | GK11431-PA | 1..494 | 1..499 | 2603 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24702-PA | 499 | GE24702-PA | 1..499 | 1..499 | 2687 | 99.6 | Plus |
Translation from 493 to 1992
> LD12394.hyp MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tws-PI | 499 | CG6235-PI | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PF | 499 | CG6235-PF | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PA | 499 | CG6235-PA | 1..499 | 1..499 | 2650 | 100 | Plus |
tws-PH | 443 | CG6235-PH | 2..443 | 58..499 | 2336 | 99.8 | Plus |
tws-PG | 443 | CG6235-PG | 2..443 | 58..499 | 2336 | 99.8 | Plus |