BDGP Sequence Production Resources |
Search the DGRC for LD12407
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 124 |
Well: | 7 |
Vector: | pBS SK- |
Associated Gene/Transcript | cnc-RD |
Protein status: | LD12407.pep: wuzgold |
Preliminary Size: | 2331 |
Sequenced Size: | 2456 |
Gene | Date | Evidence |
---|---|---|
CG4578 | 2001-01-01 | Release 2 assignment |
CG17894 | 2001-01-01 | Release 2 assignment |
CG17894 | 2001-10-10 | Blastp of sequenced clone |
CG17894 | 2003-01-01 | Sim4 clustering to Release 3 |
cnc | 2008-04-29 | Release 5.5 accounting |
cnc | 2008-08-15 | Release 5.9 accounting |
cnc | 2008-12-18 | 5.12 accounting |
2456 bp (2456 high quality bases) assembled on 2005-08-25
GenBank Submission: AY061154
> LD12407.complete TAAATATTAGAACCGACGCGACTCGAAAATCCATTTAGCCATATATATGC ACACACATACCTATTCATTAAAGATCAAAACGCGCAACGTGCCGTAAAGC TTCTGTCGCATGGTTGACAACAGCACTAGCAACAACTCCTCGGTTCTGGG CTTGCCCAGCAGTGGACATGTTAGCAACGGCTCCGGTAGCTCGGCACAAC TTGGGGCGGGAAATCCGCACGGTAACCAGGCCAACGGAGCGTCCGGCGGC GTTGGCTCAATGAGCGGATCAGCTGTGGGCGCTGGAGCTACGGGAATGAC CGCCGATCTCTTGGCAAGCGGCGGTGCAGGAGCACAAGGCGGTGCGGATC GCTTGGACGCGTCCAGCGACAGTGCTGTCAGTTCGATGGGCTCCGAGCGA GTGCCGTCCCTCTCCGACGGCGAGTGGGGTGAGGGCAGTGACTCCGCCCA GGATTACCATCAGGGCAAGTACGGAGGCCCCTACGACTTCAGCTACAACA ATAATTCACGGCTTAGCACCGCCACACGTCAGCCGCCGGTGGCGCAGAAG AAGCATCAGCTGTACGGCAAGAGGGATCCCCATAAGCAGACGCCATCGGC TTTGCCACCAACAGCTCCACCAGCAGCCGCGACTGCAGTCCAATCGCAGA GTATCAAGTACGAGTACGATGCTGGGTACGCCTCCTCGGGAATGGCCAGC GGTGGAATCAGTGAGCCAGGAGCGATGGGACCCGCTCTATCCAAGGACTA TCATCATCATCAGCCTTACGGCATGGGAGCCAGCGGCAGCGCCTTTTCCG GCGACTATACAGTACGACCATCGCCAAGGACTTCGCAGGATTTGGTGCAA CTAAATCATACCTACTCGCTACCCCAGGGAAGTGGATCCCTTCCCAGACC CCAGGCACGCGATAAGAAGCCCCTGGTCGCCACTAAAACCGCATCGAAGG GAGCGAGTGCCGGCAACAGCAGCAGTGTTGGCGGAAACAGCAGCAACTTG GAGGAAGAGCATCTGACACGCGATGAAAAGCGCGCTCGATCCCTGAACAT ACCCATTTCAGTGCCGGACATCATTAACCTGCCCATGGACGAGTTCAACG AGCGCTTGTCGAAGTACGACCTTAGCGAGAACCAGTTGTCGCTGATTCGC GACATTCGTCGGCGTGGAAAGAACAAGGTCGCTGCCCAGAATTGCAGGAA ACGCAAATTGGACCAGATCCTGACTCTAGAGGATGAGGTGAACGCGGTGG TTAAGCGCAAGACCCAACTTAATCAGGACCGCGATCATTTGGAGAGCGAA CGCAAGCGCATCTCGAACAAGTTTGCCATGCTGCATCGTCATGTCTTCCA GTACCTACGGGATCCCGAGGGAAATCCCTGCTCGCCGGCGGACTACAGTT TGCAACAGGCTGCCGATGGCTCCGTCTACTTGCTACCACGTGAAAAGTCC GAGGGTAACAACACGGCTACAGCTGCCTCCAATGCTGTTTCGTCGGCCAG TGGGGGAAGTCTTAATGGCCACGTGCCCACTCAGGCTCCCATGCACAGCC ATCAGAGCCACGGAATGCAGGCGCAACATGTTGTCGGTGGGATGTCGCAG CAGCAGCAACAGCAGTCGAGGCTGCCTCCACACCTGCAACAGCAGCATCA TCTGCAGTCGCAGCAACAGCAGCCGGGAGGTCAGCAGCAACAGCAGCACC GCAAGGAATGAAAGTACCTGTTGCGAATTGCCGCAACTAAGAGTTGGTTC ACTAGTTTCCAGCGCGGGCAGCAGCATCGATCCGTGCAGCAGCAACAGCA ACAGTTTGATTACCGCTACGATATGATGAACAACAGTTATCTGTACTACT GAGCGGCGATTTGGATATTCTACTTCTTGTTTTAGATGCCACATGTTGCT GGCAACATTTGTTGCACCCGCTGCTTTCGGCCCATTGGAGCTCTTTCATT TATCGCACCAATCCTCCCATTAATGGTTTACTCATTTAGTCAGCATGATT GTTATTTATTTTTTAATTAATTGATTATTTGGACTCGTCCAAGTCCGTCT TGCATGGTGTTGTCCCTTCTGGACAGCGTATGCGAAGCCTTTTACTTAAT TGCAATTAATGAAAAACAAAACTTGTGATAAAACAGCTCTTTTACTCCGA AATATTTGCGCCCCAAAGGTCAAGCTGACAGAAAAATGTGCGAAAACAAA CAGATCCGAAAAGAATGTAATTAAAAATGCTTCACATGAATTTGTAAATC AGTAAACAACTCACATTCAGAACCAATCCCACTTATCCATTATTCATCGT CGCGTCGTCCAACAATATTTGATGGTGAAACCGTTTACATCTCTATAATA TTAGCTTGTAAAATATGAAAACACAAAGATGGATGCAGAGAAAAATGTAT AAAATAGACGATAGGAAAATACACACACACACAAAACTAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cnc-RF | 3577 | cnc-RF | 1..2439 | 1..2439 | 12195 | 100 | Plus |
cnc-RG | 3950 | cnc-RG | 472..2812 | 99..2439 | 11705 | 100 | Plus |
cnc.b | 3950 | cnc.b | 472..2812 | 99..2439 | 11705 | 100 | Plus |
cnc-RG | 3950 | cnc-RG | 191..289 | 1..99 | 495 | 100 | Plus |
cnc.b | 3950 | cnc.b | 191..289 | 1..99 | 495 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19011288..19012540 | 1351..99 | 6250 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 19010136..19011217 | 2431..1349 | 5320 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 19014443..19014541 | 99..1 | 480 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23187877..23189129 | 1351..99 | 6265 | 100 | Minus |
3R | 32079331 | 3R | 23186716..23187806 | 2439..1349 | 5455 | 100 | Minus |
3R | 32079331 | 3R | 23191022..23191120 | 99..1 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22928708..22929960 | 1351..99 | 6265 | 100 | Minus |
3R | 31820162 | 3R | 22927547..22928637 | 2439..1349 | 5455 | 100 | Minus |
3R | 31820162 | 3R | 22931853..22931951 | 99..1 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6869 | 1598..1718 | 249 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2468 | 1532..1704 | 226 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6927 | 1598..1809 | 225 | 61.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 1598..1708 | 222 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2427 | 1598..1700 | 207 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6944 | 1597..1694 | 202 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6900 | 1598..1698 | 198 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6931 | 1597..1708 | 198 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2668 | 1597..1806 | 192 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2986 | 1598..1803 | 185 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6937 | 1621..1851 | 183 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2513 | 1598..1704 | 178 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2516 | 1598..1739 | 176 | 61.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 1597..1670 | 154 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2665 | 1597..1668 | 144 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2916 | 1598..1709 | 137 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6850 | 1665..1804 | 130 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2422 | 1760..1835 | 121 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2838 | 1597..1799 | 120 | 56.9 | Plus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 2273..2335 | 2198..2258 | 120 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1587 | 1601..1649 | 119 | 71.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1075..1145 | 929..997 | 116 | 64.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19010970..19011214 | 1352..1596 | 99 | <- | Minus |
chr3R | 19010131..19010867 | 1699..2438 | 95 | == | Minus |
chr3R | 19011288..19012540 | 99..1351 | 99 | <- | Minus |
chr3R | 19014444..19014541 | 1..98 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RB | 805..2418 | 98..1711 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RB | 805..2418 | 98..1711 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RO | 2539..4293 | 98..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RB | 805..2418 | 98..1711 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RO | 2539..4293 | 98..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RF | 1..2438 | 1..2438 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RF | 1..2438 | 1..2438 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RF | 1..2438 | 1..2438 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RF | 1..2438 | 1..2438 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnc-RF | 1..2438 | 1..2438 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23186717..23187803 | 1352..2438 | 100 | <- | Minus |
3R | 23187877..23189129 | 99..1351 | 100 | <- | Minus |
3R | 23191023..23191120 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23186717..23187803 | 1352..2438 | 100 | <- | Minus |
3R | 23187877..23189129 | 99..1351 | 100 | <- | Minus |
3R | 23191023..23191120 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23186717..23187803 | 1352..2438 | 100 | <- | Minus |
3R | 23187877..23189129 | 99..1351 | 100 | <- | Minus |
3R | 23191023..23191120 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19012439..19013525 | 1352..2438 | 100 | <- | Minus |
arm_3R | 19013599..19014851 | 99..1351 | 100 | <- | Minus |
arm_3R | 19016745..19016842 | 1..98 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22927548..22928634 | 1352..2438 | 100 | <- | Minus |
3R | 22928708..22929960 | 99..1351 | 100 | <- | Minus |
3R | 22931854..22931951 | 1..98 | 100 | Minus |
Translation from 109 to 1710
> LD12407.pep MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18025-PA | 1395 | GF18025-PA | 851..1354 | 1..496 | 1992 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12453-PA | 1396 | GG12453-PA | 858..1396 | 1..533 | 2673 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21438-PA | 1373 | GH21438-PA | 828..1341 | 1..507 | 1369 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cnc-PN | 1133 | CG43286-PN | 601..1133 | 1..533 | 2765 | 100 | Plus |
cnc-PM | 1133 | CG43286-PM | 601..1133 | 1..533 | 2765 | 100 | Plus |
cnc-PP | 711 | CG43286-PP | 179..711 | 1..533 | 2765 | 100 | Plus |
cnc-PO | 1430 | CG43286-PO | 851..1383 | 1..533 | 2765 | 100 | Plus |
cnc-PL | 1046 | CG43286-PL | 514..1046 | 1..533 | 2765 | 100 | Plus |
cnc-PK | 1383 | CG43286-PK | 851..1383 | 1..533 | 2765 | 100 | Plus |
cnc-PJ | 1383 | CG43286-PJ | 851..1383 | 1..533 | 2765 | 100 | Plus |
cnc-PI | 1133 | CG43286-PI | 601..1133 | 1..533 | 2765 | 100 | Plus |
cnc-PH | 533 | CG43286-PH | 1..533 | 1..533 | 2765 | 100 | Plus |
cnc-PG | 533 | CG17894-PG | 1..533 | 1..533 | 2765 | 100 | Plus |
cnc-PB | 805 | CG17894-PB | 273..805 | 1..533 | 2765 | 100 | Plus |
cnc-PC | 1383 | CG17894-PC | 851..1383 | 1..533 | 2765 | 100 | Plus |
cnc-PA | 533 | CG17894-PA | 1..533 | 1..533 | 2765 | 100 | Plus |
cnc-PD | 533 | CG17894-PD | 1..533 | 1..533 | 2765 | 100 | Plus |
cnc-PE | 533 | CG17894-PE | 1..533 | 1..533 | 2765 | 100 | Plus |
cnc-PF | 533 | CG17894-PF | 1..533 | 1..533 | 2765 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10508-PA | 1384 | GI10508-PA | 844..1347 | 1..506 | 1394 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23043-PA | 974 | GL23043-PA | 291..793 | 1..509 | 1785 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14711-PC | 823 | GA14711-PC | 291..793 | 1..509 | 1800 | 77.8 | Plus |
Dpse\GA14711-PA | 1403 | GA14711-PA | 871..1373 | 1..509 | 1800 | 77.8 | Plus |
Dpse\GA14711-PB | 533 | GA14711-PB | 1..503 | 1..509 | 1796 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23585-PA | 413 | GM23585-PA | 15..413 | 135..533 | 2073 | 97.7 | Plus |
Dsec\GM23584-PA | 953 | GM23584-PA | 847..923 | 1..77 | 354 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\fzo-PA | 983 | GD18399-PA | 451..983 | 1..533 | 2768 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23189-PA | 1386 | GJ23189-PA | 829..1360 | 1..523 | 1427 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13231-PA | 1418 | GK13231-PA | 875..1384 | 1..507 | 1721 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23976-PA | 1385 | GE23976-PA | 850..1385 | 1..533 | 2728 | 97.9 | Plus |
Translation from 109 to 1710
> LD12407.hyp MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cnc-PN | 1133 | CG43286-PN | 601..1133 | 1..533 | 2765 | 100 | Plus |
cnc-PM | 1133 | CG43286-PM | 601..1133 | 1..533 | 2765 | 100 | Plus |
cnc-PP | 711 | CG43286-PP | 179..711 | 1..533 | 2765 | 100 | Plus |
cnc-PO | 1430 | CG43286-PO | 851..1383 | 1..533 | 2765 | 100 | Plus |
cnc-PL | 1046 | CG43286-PL | 514..1046 | 1..533 | 2765 | 100 | Plus |