Clone LD12407 Report

Search the DGRC for LD12407

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:124
Well:7
Vector:pBS SK-
Associated Gene/Transcriptcnc-RD
Protein status:LD12407.pep: wuzgold
Preliminary Size:2331
Sequenced Size:2456

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4578 2001-01-01 Release 2 assignment
CG17894 2001-01-01 Release 2 assignment
CG17894 2001-10-10 Blastp of sequenced clone
CG17894 2003-01-01 Sim4 clustering to Release 3
cnc 2008-04-29 Release 5.5 accounting
cnc 2008-08-15 Release 5.9 accounting
cnc 2008-12-18 5.12 accounting

Clone Sequence Records

LD12407.complete Sequence

2456 bp (2456 high quality bases) assembled on 2005-08-25

GenBank Submission: AY061154

> LD12407.complete
TAAATATTAGAACCGACGCGACTCGAAAATCCATTTAGCCATATATATGC
ACACACATACCTATTCATTAAAGATCAAAACGCGCAACGTGCCGTAAAGC
TTCTGTCGCATGGTTGACAACAGCACTAGCAACAACTCCTCGGTTCTGGG
CTTGCCCAGCAGTGGACATGTTAGCAACGGCTCCGGTAGCTCGGCACAAC
TTGGGGCGGGAAATCCGCACGGTAACCAGGCCAACGGAGCGTCCGGCGGC
GTTGGCTCAATGAGCGGATCAGCTGTGGGCGCTGGAGCTACGGGAATGAC
CGCCGATCTCTTGGCAAGCGGCGGTGCAGGAGCACAAGGCGGTGCGGATC
GCTTGGACGCGTCCAGCGACAGTGCTGTCAGTTCGATGGGCTCCGAGCGA
GTGCCGTCCCTCTCCGACGGCGAGTGGGGTGAGGGCAGTGACTCCGCCCA
GGATTACCATCAGGGCAAGTACGGAGGCCCCTACGACTTCAGCTACAACA
ATAATTCACGGCTTAGCACCGCCACACGTCAGCCGCCGGTGGCGCAGAAG
AAGCATCAGCTGTACGGCAAGAGGGATCCCCATAAGCAGACGCCATCGGC
TTTGCCACCAACAGCTCCACCAGCAGCCGCGACTGCAGTCCAATCGCAGA
GTATCAAGTACGAGTACGATGCTGGGTACGCCTCCTCGGGAATGGCCAGC
GGTGGAATCAGTGAGCCAGGAGCGATGGGACCCGCTCTATCCAAGGACTA
TCATCATCATCAGCCTTACGGCATGGGAGCCAGCGGCAGCGCCTTTTCCG
GCGACTATACAGTACGACCATCGCCAAGGACTTCGCAGGATTTGGTGCAA
CTAAATCATACCTACTCGCTACCCCAGGGAAGTGGATCCCTTCCCAGACC
CCAGGCACGCGATAAGAAGCCCCTGGTCGCCACTAAAACCGCATCGAAGG
GAGCGAGTGCCGGCAACAGCAGCAGTGTTGGCGGAAACAGCAGCAACTTG
GAGGAAGAGCATCTGACACGCGATGAAAAGCGCGCTCGATCCCTGAACAT
ACCCATTTCAGTGCCGGACATCATTAACCTGCCCATGGACGAGTTCAACG
AGCGCTTGTCGAAGTACGACCTTAGCGAGAACCAGTTGTCGCTGATTCGC
GACATTCGTCGGCGTGGAAAGAACAAGGTCGCTGCCCAGAATTGCAGGAA
ACGCAAATTGGACCAGATCCTGACTCTAGAGGATGAGGTGAACGCGGTGG
TTAAGCGCAAGACCCAACTTAATCAGGACCGCGATCATTTGGAGAGCGAA
CGCAAGCGCATCTCGAACAAGTTTGCCATGCTGCATCGTCATGTCTTCCA
GTACCTACGGGATCCCGAGGGAAATCCCTGCTCGCCGGCGGACTACAGTT
TGCAACAGGCTGCCGATGGCTCCGTCTACTTGCTACCACGTGAAAAGTCC
GAGGGTAACAACACGGCTACAGCTGCCTCCAATGCTGTTTCGTCGGCCAG
TGGGGGAAGTCTTAATGGCCACGTGCCCACTCAGGCTCCCATGCACAGCC
ATCAGAGCCACGGAATGCAGGCGCAACATGTTGTCGGTGGGATGTCGCAG
CAGCAGCAACAGCAGTCGAGGCTGCCTCCACACCTGCAACAGCAGCATCA
TCTGCAGTCGCAGCAACAGCAGCCGGGAGGTCAGCAGCAACAGCAGCACC
GCAAGGAATGAAAGTACCTGTTGCGAATTGCCGCAACTAAGAGTTGGTTC
ACTAGTTTCCAGCGCGGGCAGCAGCATCGATCCGTGCAGCAGCAACAGCA
ACAGTTTGATTACCGCTACGATATGATGAACAACAGTTATCTGTACTACT
GAGCGGCGATTTGGATATTCTACTTCTTGTTTTAGATGCCACATGTTGCT
GGCAACATTTGTTGCACCCGCTGCTTTCGGCCCATTGGAGCTCTTTCATT
TATCGCACCAATCCTCCCATTAATGGTTTACTCATTTAGTCAGCATGATT
GTTATTTATTTTTTAATTAATTGATTATTTGGACTCGTCCAAGTCCGTCT
TGCATGGTGTTGTCCCTTCTGGACAGCGTATGCGAAGCCTTTTACTTAAT
TGCAATTAATGAAAAACAAAACTTGTGATAAAACAGCTCTTTTACTCCGA
AATATTTGCGCCCCAAAGGTCAAGCTGACAGAAAAATGTGCGAAAACAAA
CAGATCCGAAAAGAATGTAATTAAAAATGCTTCACATGAATTTGTAAATC
AGTAAACAACTCACATTCAGAACCAATCCCACTTATCCATTATTCATCGT
CGCGTCGTCCAACAATATTTGATGGTGAAACCGTTTACATCTCTATAATA
TTAGCTTGTAAAATATGAAAACACAAAGATGGATGCAGAGAAAAATGTAT
AAAATAGACGATAGGAAAATACACACACACACAAAACTAAAAAAAAAAAA
AAAAAA

LD12407.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-RF 3577 cnc-RF 1..2439 1..2439 12195 100 Plus
cnc-RG 3950 cnc-RG 472..2812 99..2439 11705 100 Plus
cnc.b 3950 cnc.b 472..2812 99..2439 11705 100 Plus
cnc-RG 3950 cnc-RG 191..289 1..99 495 100 Plus
cnc.b 3950 cnc.b 191..289 1..99 495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19011288..19012540 1351..99 6250 99.9 Minus
chr3R 27901430 chr3R 19010136..19011217 2431..1349 5320 99.6 Minus
chr3R 27901430 chr3R 19014443..19014541 99..1 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:59:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23187877..23189129 1351..99 6265 100 Minus
3R 32079331 3R 23186716..23187806 2439..1349 5455 100 Minus
3R 32079331 3R 23191022..23191120 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22928708..22929960 1351..99 6265 100 Minus
3R 31820162 3R 22927547..22928637 2439..1349 5455 100 Minus
3R 31820162 3R 22931853..22931951 99..1 495 100 Minus
Blast to na_te.dros performed 2019-03-16 01:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6869 1598..1718 249 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2468 1532..1704 226 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6927 1598..1809 225 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6886 1598..1708 222 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2427 1598..1700 207 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6847..6944 1597..1694 202 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6900 1598..1698 198 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6817..6931 1597..1708 198 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2456..2668 1597..1806 192 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2781..2986 1598..1803 185 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6703..6937 1621..1851 183 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2513 1598..1704 178 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2516 1598..1739 176 61.1 Plus
roo 9092 roo DM_ROO 9092bp 1090..1163 1597..1670 154 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2594..2665 1597..1668 144 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2916 1598..1709 137 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6850 1665..1804 130 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2422 1760..1835 121 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2633..2838 1597..1799 120 56.9 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 2273..2335 2198..2258 120 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1587 1601..1649 119 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1075..1145 929..997 116 64.8 Plus

LD12407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:56:21 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19010970..19011214 1352..1596 99 <- Minus
chr3R 19010131..19010867 1699..2438 95 == Minus
chr3R 19011288..19012540 99..1351 99 <- Minus
chr3R 19014444..19014541 1..98 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:46:24 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RB 805..2418 98..1711 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:40 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RB 805..2418 98..1711 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RO 2539..4293 98..1852 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:23 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RB 805..2418 98..1711 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:50:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RO 2539..4293 98..1852 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:49 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RF 1..2438 1..2438 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:40 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RF 1..2438 1..2438 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RF 1..2438 1..2438 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:23 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RF 1..2438 1..2438 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:50:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RF 1..2438 1..2438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:21 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23186717..23187803 1352..2438 100 <- Minus
3R 23187877..23189129 99..1351 100 <- Minus
3R 23191023..23191120 1..98 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:21 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23186717..23187803 1352..2438 100 <- Minus
3R 23187877..23189129 99..1351 100 <- Minus
3R 23191023..23191120 1..98 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:56:21 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23186717..23187803 1352..2438 100 <- Minus
3R 23187877..23189129 99..1351 100 <- Minus
3R 23191023..23191120 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19012439..19013525 1352..2438 100 <- Minus
arm_3R 19013599..19014851 99..1351 100 <- Minus
arm_3R 19016745..19016842 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:56 Download gff for LD12407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22927548..22928634 1352..2438 100 <- Minus
3R 22928708..22929960 99..1351 100 <- Minus
3R 22931854..22931951 1..98 100   Minus

LD12407.pep Sequence

Translation from 109 to 1710

> LD12407.pep
MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS
MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS
LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ
LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI
SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH
TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE
HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR
RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR
ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN
NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ
QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKE*

LD12407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18025-PA 1395 GF18025-PA 851..1354 1..496 1992 85.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12453-PA 1396 GG12453-PA 858..1396 1..533 2673 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21438-PA 1373 GH21438-PA 828..1341 1..507 1369 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-PN 1133 CG43286-PN 601..1133 1..533 2765 100 Plus
cnc-PM 1133 CG43286-PM 601..1133 1..533 2765 100 Plus
cnc-PP 711 CG43286-PP 179..711 1..533 2765 100 Plus
cnc-PO 1430 CG43286-PO 851..1383 1..533 2765 100 Plus
cnc-PL 1046 CG43286-PL 514..1046 1..533 2765 100 Plus
cnc-PK 1383 CG43286-PK 851..1383 1..533 2765 100 Plus
cnc-PJ 1383 CG43286-PJ 851..1383 1..533 2765 100 Plus
cnc-PI 1133 CG43286-PI 601..1133 1..533 2765 100 Plus
cnc-PH 533 CG43286-PH 1..533 1..533 2765 100 Plus
cnc-PG 533 CG17894-PG 1..533 1..533 2765 100 Plus
cnc-PB 805 CG17894-PB 273..805 1..533 2765 100 Plus
cnc-PC 1383 CG17894-PC 851..1383 1..533 2765 100 Plus
cnc-PA 533 CG17894-PA 1..533 1..533 2765 100 Plus
cnc-PD 533 CG17894-PD 1..533 1..533 2765 100 Plus
cnc-PE 533 CG17894-PE 1..533 1..533 2765 100 Plus
cnc-PF 533 CG17894-PF 1..533 1..533 2765 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10508-PA 1384 GI10508-PA 844..1347 1..506 1394 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23043-PA 974 GL23043-PA 291..793 1..509 1785 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14711-PC 823 GA14711-PC 291..793 1..509 1800 77.8 Plus
Dpse\GA14711-PA 1403 GA14711-PA 871..1373 1..509 1800 77.8 Plus
Dpse\GA14711-PB 533 GA14711-PB 1..503 1..509 1796 77.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23585-PA 413 GM23585-PA 15..413 135..533 2073 97.7 Plus
Dsec\GM23584-PA 953 GM23584-PA 847..923 1..77 354 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\fzo-PA 983 GD18399-PA 451..983 1..533 2768 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23189-PA 1386 GJ23189-PA 829..1360 1..523 1427 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13231-PA 1418 GK13231-PA 875..1384 1..507 1721 75 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23976-PA 1385 GE23976-PA 850..1385 1..533 2728 97.9 Plus

LD12407.hyp Sequence

Translation from 109 to 1710

> LD12407.hyp
MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS
MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS
LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ
LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI
SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH
TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE
HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR
RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR
ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN
NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ
QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKE*

LD12407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-PN 1133 CG43286-PN 601..1133 1..533 2765 100 Plus
cnc-PM 1133 CG43286-PM 601..1133 1..533 2765 100 Plus
cnc-PP 711 CG43286-PP 179..711 1..533 2765 100 Plus
cnc-PO 1430 CG43286-PO 851..1383 1..533 2765 100 Plus
cnc-PL 1046 CG43286-PL 514..1046 1..533 2765 100 Plus